mRNA_P-littoralis_Contig203.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.1.1
Unique NamemRNA_P-littoralis_Contig203.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:2..4098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.0495396-CDS-P-littoralis_Contig203:3..1621680789993.0495396-CDS-P-littoralis_Contig203:3..162Pylaiella littoralis U1_48CDSP-littoralis_Contig203 4..162 -
1680789993.0632803-CDS-P-littoralis_Contig203:4014..40981680789993.0632803-CDS-P-littoralis_Contig203:4014..4098Pylaiella littoralis U1_48CDSP-littoralis_Contig203 4015..4098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.1.1prot_P-littoralis_Contig203.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 4..4098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.1.1

>prot_P-littoralis_Contig203.1.1 ID=prot_P-littoralis_Contig203.1.1|Name=mRNA_P-littoralis_Contig203.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
AVARRSSKNRANTYQRSLTHALWHSVGTHRKRHWGAASAGRVCSVLVWAN
ERIAERGVGREKLSNMAPQSQLKERAILAQR
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mRNA from alignment at P-littoralis_Contig203:2..4098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.1.1 ID=mRNA_P-littoralis_Contig203.1.1|Name=mRNA_P-littoralis_Contig203.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4097bp|location=Sequence derived from alignment at P-littoralis_Contig203:2..4098- (Pylaiella littoralis U1_48)
GCCGTCGCACGCCGGTCATCTAAAAACCGGGCGAACACGTACCAGAGATC
ACTGACACACGCACTGTGGCACAGCGTAGGGACGCTGCACGCGTTCTGAC
ACTAACGGGCGCGCGTTGCCATGGATCTATTTTATCGTCTCACATTTGTC
AAAAGACATGTCATGCTGTACCACGATGCGATCATATGAGTTATTTGAGA
CTGTCGCACGTCACAGAACGAGTTGCCTTCATACCAACGCAGGTCGCCAT
TCGATAGACGCACACCCGTAATGATAGACGCACACCCGCAATGAGGCTGC
CAGCGCAGCACAGGTGCAGATAGCCATAACGTAGTCCACTATCGCGCATT
TCGCACTTGGTACGTACGAGGTACCGGATGCAGGGACCGTAGTGAGGATA
CCGGGACATGATCGAACGAAACAAAAACAAAATGCGGGTCACCCAAATCC
AACTTGGATCCGTGGTACAGAGACCGCCGCCCACACAATGGCGGAGAACC
GAAGTAATACGCGTCGTTCGACGCAGGGCCAACTATACTGTTACGATGAG
CCACCACTGCTGTCCGATTGTTGCGCGATCCACGATATCATGTCGTGAGA
TCGCACGCACAACGGTCAGAGAGGGCACACAGCAGCAGTAGTAGTCACAC
ATGGAGTATATCGTTGCGCATATACACGACGACTCGACAGTCAACGTCGT
GAGGTCAACTACATTAACAATATACCAAAGTATACTTCGAGTATAATACT
TCGACTAGAGGGTGTGAACCGGAGTGGCAGGCGTCATACGACGCAGGGCA
AACTATGCTGCTACCATGCGCCACCACTGCTGTCCGATTGTTGCGCGATC
CACAACTTCCATGTAGTGAGTTCGCGCACACAACGGTCAGGGAGGGCACA
ATGCAGTAGTATACCGAGTCGCTTATATAGTTGCACATATACACGACGAT
TTGTCAAAGTCAACACATGTATTATTAGTTTTAGGTCAACTCGACAGTCG
ACCACACAGGTATACAGCAAAGTAAATGATATACCAAAGTATATGATACT
CCGACTCGAGGTGTACCCGACGTAGTCGACCACACGGGAGAGGGGAAAAC
AAAAATTCAGCGGGTCTGAACCGAAAGATAATTCAAAGAGACGAGAGAAA
CAAACCCGGGGTTTCGAGTACAACGCATGTATTATAGGATGTAGTCGACG
CAGTCGACATAGGGGTGTAGTCGACGTAGTCGACCACACAGGGTAAATTC
AGCAAAGCTGAAATAAAAGATATACCAAAGTATATGATACTCCGACTCCA
GGGTGCAGCCGACGTAATCGACCACACGGGAGAGGGGAAAAACAAAAATT
CAGCGGGTCTGAACCGAAAGATAATACAAAGAGACGAGAGAAACAAACCC
GGGGGTTTCGAGTACAACGCATGTATTATAGGGTGTAGTCGACGCGGTCG
ACCACACAGGGGAAATTCAGCAAGGCTGAAACGGAAGATAATACAAAAGA
AAAACGAACCCGGCGGTTCTCGCATACAACGCATGTATTATCCCGCCCGC
ATCACACACTGGTGATATCAGGCGATGGCACTTCCAACGTAATGTCAATA
AGGGCGAGTTCCTCGCAGGGCGAGTTCCTCGCAGGTGCGAGAAGCAGGTT
TTGCCCACATCCTCGCGTCCCATAGTTTTGCCACGGTAACCGCGAGAGTA
ACATAACGCGTGCGATACACAGCGAAGCTCGAACAAATCCGCGTGTCTTC
GCATTACGGAAAACCCCACGTCGTTGTCGCGGTGCACTCCGCACAATTAC
GATGTCAACAGGCCGGCGCCTCGACCGAAGTAGTGCCACCAATGTCGTTT
TGACTTTTTTTTTCGCAAGGGTGAAAATAGGCATGGCCCATAAAATTCGC
GTAGCACCATCTGCTGTCGCTGTCATACGTACCCATGATCATTGGCCGGC
GCCGAACCTCAATAGTACCAGCAGGGCCGCGTTTCTCACAAGTGTGGAAA
ATAGGTTCGGCACAGAGTTCTGCATATCACGAAAACGAAGACAAAAATAC
ATATGGCATCGAAATTAGGGTCTGTTGAAAGCAGGAACAGCACCGTTTAC
TCGAAGTTCCCACCGGCGTGGCGATAGAAGACAGGACTACCGATTCGGCA
TGGAGTAACCGGCCCCGCGGCGCGGAGACACGCGCACGGAATAAGTAAGT
TGTCAGTTGCAGCTATGGACCCACTCTTATCTCACGATTGCGAACCCACC
TTTCTGGTTTTAATTTGGCGATGAATTTGTGTTTTCCCAAGAGTTTTTTT
TTCTTTTCGGAGCCAGCATTACTGTCAGAGACAAGAGTCGCGATCATGAG
CTTTGAATACTGCAGCAGGCACGTATACACGGAATCGTACCGCGCACACC
TATCGCACATATGTCACGCCGTTGGCACTGCTGGGGCAGATACGGTGCGA
TAATGAGGCCGCACCCAGCCTGTATACAGCAGTTGCACGAAAAAAAAGCC
GGCACGATTATCACTCACGAAGAAATATAGTGACGGGGTGTGGGTGCAAC
ATATGCCACCCACGGTTTAAGGCGTCGAACGTGCCGGAGCACGAGGTTGT
CACGCGTTAACCGGCCAAGGGGTCCGACGAGATGATCGGATTCATCGAAT
ATATTCCAGGTGGTACTTCGGTTTCTTATGTCCCCGCCAGCCGGCTCCGA
TGCCGACGTCCAAGGGGTGCAGGGCGGAATTCGCCGGCACGAGAACGAGC
GCTCTCACTCTGTCGGCGGAGGTGGCGGACCTCCAAAATTCGCTCGAGGC
CAAGTTGGCCACGGTCCTGACCACTCTCCAGCAGGTGCGGCAGATGCATC
AGGGCGGGGCCCACGGCGGAACCCAGGTAGCCGGTCACGCCGGAGGGGGG
CAGGCGCGGCAGCGGTGCTAGCGGGCGGCACGTTCGGGGGCGCCCCGCTA
TCTCACGGGGGCATGGCGGGTTCGGCCCGGCAGGCCATAGTATCGCCTGC
CTCCCTCCCCCGCGCTCACGGGATGGGGCCGGTGCTGGGCAACCCGCAGC
TTGGCTTCTCGGTCCACACGGGGAGGGGCCATCCAGACCCAGACGCAGCG
ACGGATGGAAAAGCTGTTTACGGACCAGCGCGTCGCGGAGTGCGGGGAGC
GTACGGCGGTGGTGGATAGTGGTCGGCAGCCCCCGCCCATCGAGCGCCAG
TCGCTCCAGGGCTTACGTTCGATGCCATCGAGGTAACGTCGAAGGTCGCC
GACTCGTTGCGGTGCTGCGACTCGCCCTCCGCCTCGCCCCCGCGCGGCGC
AGTCGGCACCATCCTCATGGCAACACACCTTTGCCTGATGGCGGAGGCCT
TCGTCACCATCGCGCGACGAGGGGTGGTCGACGACCCCCGGCTGCCGGCC
AGTTCGACCGCACCGGCGACTGCCGCTTCGGTTCCCGGTGCGTGTTTACC
CATGTTCATGACGTCAGCAGGGGTTCGCCCAAGCGGAAGGCCGCGGGCGA
CGGCGGGGCTGGCACTTCCGGTGGCAGCCACAAGGAGAGCAAGGGGACTG
CTCCTGCACCCGTCAAGAAGACAAAAGACACCTCGGCCAGTGGAGGGGCA
CCACCAGCGGTGGGGCCAGCGGCGGCGGGGGCGCGTCTACGGGCAAGGAA
GACAAATAGGGCCGCGGGCCCTTCCCCCAAAAAGGGGGAGGGCCGTCTAT
TGCTGCCACGGGGGCTGCGATTCCGATAGGGGATGCGGCGCTCTTGCAGC
CTAGGGCGGTGACGGCGTTGACCCGAGGTGGGGTCGGTAATTTGCATGCT
TGTCTTTCTTTGTTACATGATATATGTCACGATCCGTTCAGGACGGTTCG
TCGCGGGTTGGGGTTCTCGGCCGAGTGGCCGAGGAATGCGCAATTTATTT
AGATATGCATGACGGGCGATTCGAGTGTATGTTGGCCATCGAAAACGGCA
TTGGGGTGCCGCGAGTGCGGGCCGAGTCTGTTCGGTTCTGGTTTGGGCGA
ACGAAAGGATTGCCGAGCGTGGAGTTGGTCGCGAAAAATTATCGAACATG
GCGCCGCAGTCCCAGTTGAAGGAGCGGGCGATATTGGCGCAGCGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:2..4098-

>mRNA_P-littoralis_Contig203.1.1 ID=mRNA_P-littoralis_Contig203.1.1|Name=mRNA_P-littoralis_Contig203.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig203:2..4098- (Pylaiella littoralis U1_48)
GCCGTCGCACGCCGGTCATCTAAAAACCGGGCGAACACGTACCAGAGATC
ACTGACACACGCACTGTGGCACAGCGTAGGGACGCATCGAAAACGGCATT
GGGGTGCCGCGAGTGCGGGCCGAGTCTGTTCGGTTCTGGTTTGGGCGAAC
GAAAGGATTGCCGAGCGTGGAGTTGGTCGCGAAAAATTATCGAACATGGC
GCCGCAGTCCCAGTTGAAGGAGCGGGCGATATTGGCGCAGCGT
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