mRNA_P-littoralis_Contig202.68.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.68.1
Unique NamemRNA_P-littoralis_Contig202.68.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A6H5KHY4_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHY4_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 1.320e-112
Identity = 177/268 (66.04%), Postives = 195/268 (72.76%), Query Frame = 3 
Query:   90 MFRIFDPYAMAISFLVGGVGFGMTFFFNTAVSEWGAQEILYPAMAMIYIYARNARFFESDEESATKILEGHGENNASNAATSAGAPSAGAKDTKTAESQKIQAPSPAGVPGLVVVSGPPPTAPEAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVETYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEG-GCGVVEWHGHPARLETALAYLMDDEDEEETGAESAVGDGVR 890
            MFRIFDPYA+A+S LVGGVGF  TF+FNT +SEWG  EI YP MAMIY+YARNARFFESDEES+ KIL GHG           G            E  K Q PSP GVPGLV V GPP  AP+AGSLAVV FFATWC SCE+ LP+FLA AARY DEG+SFAGVTQEGE++LRYF+ETYQR LR VT LADEQGVLT GYQ  +  K IPHCYIVRG  G  G G G GVVEWHGHPARLE AL YLMD+++  E   E   G+GVR
Sbjct:    1 MFRIFDPYAVALSLLVGGVGFCTTFYFNTEISEWGKDEIAYPMMAMIYVYARNARFFESDEESSAKILGGHG-----------GGXXXXXXKAAEGEDGKFQVPSPVGVPGLVTVKGPPLAAPKAGSLAVVFFFATWCDSCEQVLPAFLAVAARYIDEGISFAGVTQEGEEELRYFIETYQRSLRPVTLLADEQGVLTAGYQRENRAKAIPHCYIVRGVSGDTGAGAGFGVVEWHGHPARLEAALGYLMDNDEAREDTVE---GEGVR 254
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A7S2Y039_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y039_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.060e-20
Identity = 75/250 (30.00%), Postives = 119/250 (47.60%), Query Frame = 3 
Query:   96 RIFDPYAMAISFLVGGVGFGMTFFFNTAVSEWGAQEILYPAMAMIYIYARNARFFESDEESATKILEGHGENNASNAATSAGAPSAGAKDTKTAESQKIQAPSPAGVPGLVVVSGPPPTAPEAGSLAVVL-FFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVETYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMDDE 842
            R FD +A+  + ++  +GF +++++         +E L P    +Y+Y RNARFF+ D +  +    G G                 AKD       +I  P  A + GL  + G   ++P  GS  +VL F+ATWC   +K+L       A + D+GV    +++E    LR F+ +  R L     LA E G LT+ YQ A   KT+PH Y++         G  G VEWHGHP +++  L  ++ ++
Sbjct:   31 RFFDAFALIQALVLAAIGFCLSWWY-LGWEYLTYREFLLPIGCAVYVYMRNARFFQEDGDGTS----GKGS----------------AKD-------QISKPLAAELEGLTFLQG---SSPSMGSGPIVLLFWATWCGHSKKSLVPLNRTHASFKDQGVQVVAISREEVGVLREFLPSVGRSLAYA--LASEDGRLTQKYQRAFGVKTVPHAYVI---------GRSGRVEWHGHPTQIDAVLDEVISND 238
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A5M6D8G9_9BACT (Redoxin domain-containing protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D8G9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-8
Identity = 38/134 (28.36%), Postives = 62/134 (46.27%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFV--------ETYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMD 836
            ++G++ VV F+ATWC  C  ++P        Y D GV    V+ E  D++   +        E++     + +   D  G   + Y  A E + IP  ++V         G  G+VEW GHP +L+  LA ++D
Sbjct:   57 DSGTVYVVEFWATWCGPCISSMPHLAQLQNEYRDRGVRIVSVSDESLDEVEALLKKPYPQKEESFADVTSAYSLTTDPDGSTHRDYMQAAEQRGIPTSFVV---------GKTGLVEWIGHPMKLDEPLAAVVD 181
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A517MLY1_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MLY1_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 3.760e-8
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVE---------TYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMDDE-DEEETGAESA 872
            E+G + +V F+ATWC  C   +P       +Y+D+GV    V++E  + +  F+E         TY+    + +   D      + Y  A     IP  +IV         G  G++EW GHP R+E  L  ++ D+ D E  G E A
Sbjct:   63 ESGKVYIVEFWATWCGPCIAAMPHLSETQQKYADQGVQLISVSREPLETVETFLEKPVRNEEDKTYRELTSTYSLTCDPDRSTFEDYFQAAGQTGIPCAFIV---------GKSGLIEWIGHPMRMEEPLEQVLADKWDREAFGVEFA 201
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: UPI001E3F1CAD (TlpA family protein disulfide reductase n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E3F1CAD)

HSP 1 Score: 65.5 bits (158), Expect = 5.120e-8
Identity = 37/145 (25.52%), Postives = 66/145 (45.52%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVE---------TYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMDDEDEEETGAE 866
            + G++ VV F+ATWC  C +++P  +    +Y D+GV    ++ E  + +   ++         T++    + T   D  G  T  Y  A +   IP  ++V         G  G++EW GHP RL+  L  +++   + E   E
Sbjct:   66 KEGNVYVVEFWATWCGPCIQSMPHLVELQEKYRDQGVQIVSISDEDLETVEGILDRDYPGKEGVTFKELTSAYTLTVDPDGSSTDDYMRAAQQNGIPAAFLV---------GKTGLIEWIGHPMRLDDPLEQVLEGTWDREAYKE 201
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A7C7RZY0_9BACT (TlpA family protein disulfide reductase n=1 Tax=Nitrospinaceae bacterium TaxID=2358456 RepID=A0A7C7RZY0_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 2.650e-6
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVT--QEGEDDLRYFVETYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIV 737
             +G + VV F+ATWCV C K +PSF     RY  +G++   V+  +EG   ++ FV+ Y+    S   L D  GV  K Y     + TIP  Y+V
Sbjct:   77 HSGKVIVVNFWATWCVPCIKEMPSFETLYRRYRSKGLTLLAVSLDKEGSSKVQEFVDKYEL---SFPVLLDTDGVAEKLYP----SFTIPFTYVV 164
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A517SB39_9PLAN (Thiol-disulfide oxidoreductase ResA n=1 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SB39_9PLAN)

HSP 1 Score: 59.7 bits (143), Expect = 3.490e-6
Identity = 42/134 (31.34%), Postives = 61/134 (45.52%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVETYQRPLRSVTFLA--------DEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMD 836
            + G + VV F+ATWC  C   +P       +Y D+     GV+ E    +  F++  Q+    VT+ A        D  G   + Y  A   + IP  +IV         G  GVVEW GHPAR++  LA ++D
Sbjct:   69 KPGQVYVVEFWATWCGPCLATMPHLAELQTKYGDKA-QMIGVSTEETSKVADFLKDEQK--EGVTWDATITYRLAMDVDGKTNEAYMSAAGERGIPTAFIV---------GREGVVEWIGHPARMDEPLAKVVD 190
[Close]
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Match: A0A5B9R0G5_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9R0G5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.750e-6
Identity = 38/145 (26.21%), Postives = 60/145 (41.38%), Query Frame = 3 
Query:  459 EAGSLAVVLFFATWCVSCEKNLPSFLAKAARYSDEGVSFAGVTQEGEDDLRYFVE---------TYQRPLRSVTFLADEQGVLTKGYQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMDDEDEEETGAE 866
            E   + ++ F+ATWC  C  ++P       +Y  + V    V+ E    +  F+E         TY       +   D    ++K Y  A     IP  +IV         G  G+VEW GHP R++  L  +++D  + E  AE
Sbjct:   58 EQDKVYIIEFWATWCGPCISSMPHLAETQTKYGYDTVRLISVSDEDVATIEKFLEREVQGEDDKTYDDLTSVYSLTTDPDRSVSKDYMRAAGQNGIPTAFIV---------GKTGLVEWIGHPMRMDEPLEQIVEDRWDREAFAE 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KHY4_9PHAE1.320e-11266.04Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2Y039_9STRA1.060e-2030.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5M6D8G9_9BACT2.000e-828.36Redoxin domain-containing protein n=1 Tax=Roseicon... [more]
A0A517MLY1_9BACT3.760e-829.05Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseim... [more]
UPI001E3F1CAD5.120e-825.52TlpA family protein disulfide reductase n=2 Tax=un... [more]
A0A7C7RZY0_9BACT2.650e-636.84TlpA family protein disulfide reductase n=1 Tax=Ni... [more]
A0A517SB39_9PLAN3.490e-631.34Thiol-disulfide oxidoreductase ResA n=1 Tax=Caulif... [more]
A0A5B9R0G5_9BACT3.750e-626.21Thiol-disulfide oxidoreductase ResA n=1 Tax=Roseim... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:332282..339870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008610703.1
PFAMsAhpC-TSA
Model size1176
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons4
Evalue2.75e-11
EggNOG OGs2BT11@1|root,2S1ZR@2759|Eukaryota
Ec32 ortholog descriptionAlkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant
Ec32 orthologEc-23_002130.1
Cds size807
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.68.1prot_P-littoralis_Contig202.68.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 332371..339590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.3361955-UTR-P-littoralis_Contig202:332281..3323701680789992.3361955-UTR-P-littoralis_Contig202:332281..332370Pylaiella littoralis U1_48UTRP-littoralis_Contig202 332282..332370 +
1680789992.4048872-UTR-P-littoralis_Contig202:339590..3398701680789992.4048872-UTR-P-littoralis_Contig202:339590..339870Pylaiella littoralis U1_48UTRP-littoralis_Contig202 339591..339870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.359616-CDS-P-littoralis_Contig202:332370..3325081680789992.359616-CDS-P-littoralis_Contig202:332370..332508Pylaiella littoralis U1_48CDSP-littoralis_Contig202 332371..332508 +
1680789992.3706446-CDS-P-littoralis_Contig202:337651..3379881680789992.3706446-CDS-P-littoralis_Contig202:337651..337988Pylaiella littoralis U1_48CDSP-littoralis_Contig202 337652..337988 +
1680789992.3809044-CDS-P-littoralis_Contig202:338342..3384731680789992.3809044-CDS-P-littoralis_Contig202:338342..338473Pylaiella littoralis U1_48CDSP-littoralis_Contig202 338343..338473 +
1680789992.3910668-CDS-P-littoralis_Contig202:339389..3395901680789992.3910668-CDS-P-littoralis_Contig202:339389..339590Pylaiella littoralis U1_48CDSP-littoralis_Contig202 339390..339590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.68.1

>prot_P-littoralis_Contig202.68.1 ID=prot_P-littoralis_Contig202.68.1|Name=mRNA_P-littoralis_Contig202.68.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=269bp
MFRIFDPYAMAISFLVGGVGFGMTFFFNTAVSEWGAQEILYPAMAMIYIY
ARNARFFESDEESATKILEGHGENNASNAATSAGAPSAGAKDTKTAESQK
IQAPSPAGVPGLVVVSGPPPTAPEAGSLAVVLFFATWCVSCEKNLPSFLA
KAARYSDEGVSFAGVTQEGEDDLRYFVETYQRPLRSVTFLADEQGVLTKG
YQGAHETKTIPHCYIVRGTGGGDGEGGCGVVEWHGHPARLETALAYLMDD
EDEEETGAESAVGDGVRA*
back to top

mRNA from alignment at P-littoralis_Contig202:332282..339870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.68.1 ID=mRNA_P-littoralis_Contig202.68.1|Name=mRNA_P-littoralis_Contig202.68.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7589bp|location=Sequence derived from alignment at P-littoralis_Contig202:332282..339870+ (Pylaiella littoralis U1_48)
GTGGGTTTACGCTTCCACTGACAGCTGCAGCAAGACCTGCTCGAGCAACG
CCACGCAACGACCAACCGCTAGAGCTCTACACAGCGACGATGTTTCGGAT
ATTCGATCCCTATGCCATGGCCATCAGCTTCCTCGTTGGTGGTGTGGGCT
TCGGCATGACCTTTTTCTTCAATACCGCTGTTTCGGAGTGGGGAGCACAG
GAGATCCTCTATCCTGCGATGGCGATGGTAAGCTCTGCTCGTACTGGTTG
AATAGCAAATACGCTAGCCAAAACGCCTGGACCCCGTACATACTAGCATC
ACCAGCACAAGTGGGACTTGCACGTGGGGCTGTTTTTGCAAACGGGCATA
TTATGCATTTCCCGACTCGCTCTTCGTGTTGTACCCGATTTTACCGTCAC
ACAGCAGGCAAAAACGAGGTTGTCACCGTTTTTGGAGGATCACGTACACA
CACAGAGGCCTCGCGGTTTGCGCTGCTGCTTCGTTGTGCCCTTTCTAGTC
GACTCACAGGAAATATTGGCCGTTGTCGATTAGTCATGGTACTTTCATTG
ATCGTGTTGCCAAATCTCTGCACCACACGAACTGCTTGCGGGTCTCGTTA
TTCTGACAGCACTTGACATCATCACGGTGTGTTTTCTGTGTTTTGTTTTT
CCCGACTAATGGGACGACTTGGGTTGCAGGCAGCACTTCAGGCTAGGAGT
GGGACGTGGGGAGACTGCTGAACACGATGTTGTAGACGAATTGATACCTG
CTGATATAGTGCAGTTCATTACACACCACACGTAGTCTGTATGATAGAAG
GTGTACCTTTTCGGGCCTTTTAGTGTACCTTATTCAAGGGGGTTCTGTTG
ACTTCGAAAACTTTTAAATCGGTAAATTCGGGCTGTGGAAACCCCTTGAC
CTCACTGCCTTTCACGAAGCACAGCAACACAACCAAGGCACCGTAGAAGC
TGCAGGAGGTACCAAAATCACCGAATGCTTCTTACTTGACTGTCACTCCT
GCCTTTGGTTTTATGGAGTTACAGGCTTCACCTTGGAAAACTTCGGTTAT
GGGCTGACTCCCAAAACACGAAAGACCCCAGAATCGATATAGCTGCTGCA
CCAGGGTTCGGTACGAAAAATGTTTTTGGCCTACTGTATACCATCAGCCA
TGTATTCAGCAAGATTCGCGTGTCCGCGTAATCTTTCCAGGGAGACATGC
GTGTGGGTTTTGATAAAAATACCAATTATGCGGCGGAAGAGTGCTCGGCT
GACTTCCGATGGTGAGTTTGAGCTCCGCGATCTGTAGGTTGTGCGATGAC
GGAGCACTGGATGACTTTAGCTGTGAGTTAGGCTTGCTGGGCCAAAAGTT
TGATGCGATCCGTCGACCGCAGCTTGAAATACAGTATAGCGATTTTAAAT
TTGAAGCCTCTGCGTTTTGCGTGAGTGAAGTTCCACACACTTAAATGGCG
TTTTTCGTAGTTTTACAACACAGGAACAAGAAATCGTCCCGGGACATCAA
GTTTCTTATCACACAAGGGTCTACAACGCGAAAAAAATATTCTTAGTGCC
GTATATACTTCAAGAGTTGCCGCAGCTTCCATATCACCGAAAACACCCTT
TTTGCCGAAAATCGGCTGAATTGAAGCAAAAATGTACGAAACAATAAAAA
ACACTCTTTTTTTTCAATTTGTTTTCGGCGCCAATCGCCTAGTCCGCCCT
GCGGCTCCCGAAAACGCCTTCAAATCCGCGAACTGCCGGTTATTCATGCA
GATATGGGCAAAAAACGGGAAAAAAACGAGTGTCAAATTTCCTCACCTCT
GGAGCACCCGCTTAAACTTTCTGCGTTTTTTCGGGTCTTCCTGAAGCTCA
GCACTTTTGTGACCACGGGCTAGATCAATCTGGCCATGAGTGATGAAGCT
AATGTGAGCATCCACAACACCAACAAGAAGAAGCACACAGACACACACCG
CACGCACGCACACAAACATGACACACGCTCTTGCTGATCCTACTGTATAC
GTGTACAGGATATGCTACAATTATCTTTGTGCAGCCTGATTTCCCCACAC
CTTAAAAAGGTTTGAACAATATTCTGCTTGAAGTCAAGTTTTGAATTATC
CAAATAATCCAGTTCAAAGTAGACCTAAAGTTATCGCTTACTCTTGACAC
AACTCTCGTGACTCTGCTAGCCAAGAGGTGTAGACAACGCGGCGAACTCT
TCACGTGCTACAAGTACGGGTCGCAGGTGATTATTCACATGGACAATGAA
CAAGACACGCCTTTCGGGGCGCGACCACTGCATCCCCTCCTTTTTGTACG
AATTCCGATACGCCACCACAAACAACAGTTTTTCCGAAAGCTACATATCA
TCACAGATACCGCTGTGGGTCACACGGAAAACCCCTCTATTCTCCATGTA
GTGGCGACTGCAAAGAGGCCACCTAGAGGCAGCAGTAGACACCGCCGTCA
CTCCACGTCCAACTTTCGCGTGCGGTGATATTGTAGCTGTACCGCAGACC
TCGGGGTGATGACTACTGTCTCTAGGAAGCAAGGCCGTCAGAGTGCCACG
ATACTACAGCTGTGGCTCTCTAGGATCAAGGCTCAGTTTCTTACTTTTGA
CTCCAGCCCTTGGCTACGATACCTCTATCGTTGAGGGTAAATGGTGGAGC
CAACTGCTGTTTGTTGTGTTTCTTAGCCAATTCGCGGTCCGCAACTGTAC
AAATCTGTTGTTTTATGTGGATGCACCGCGTGGTCGAATATCTACGACGC
ACTCATTGTTAGCGCGGTTCCACTAGCGCGTTGCCGGCTTCTTGTCCCGT
CCGTCTCACTCGTATTCCTCGGCATAACAGCAGCAGTTGCCATTTCCAGC
AGCTGTCGTATCAAATGCGTTTCGCAGCACATAGCAGCTCAGCACATCAC
CTGTGATTTCATCTGTTGCATCTCGGAACTGCGAGCCAGTTTTTTGGGGG
TAACCGTGGGCCTGGTAAGTAGCTGAGTTGCATAGTACCTGGCGGAACAT
TCACCTCTTAAGTGCTGGCCCCCTCCCCCATCACCGATTTACCTGGGAAG
AGGAGAAGGATGATGCCAATGCCGAATCGATTGCTTTGGAAATGATTACC
TAAAGACAGCTTTCCTTATGTACGTTGATCAAGCAGAGTGTTGCGAGGAG
ATTGAAAACCAACTCTGCATGCCTCGATAGGCGTGTTTTTTTCGACCGGC
GTCGAAGAACCCTCATCGAAAGGACTGCCCAGCACCCCCCCGAGCCGTAG
CGTGGGCGGATCTTGCTGTGCTGTTGGCTTTTCTGTTCGAAGATGCATGC
TACTGCCGGCTGTGACTCCCGAGAGCACTGGTTTCGCGTACAGCCAAAAG
GGCTCATTTTCTAGATTCACGTCGCCACGCCGGCACTACTCGCCAGAAAA
ACTCTCCGCGTGCGAGACTAGACTCAGTTTTCGAAGCTACGCGGCGGTGA
GCGCCGTTACCGCGTTCTGTGGGCTGTCGTGCAGCTGTCGCTCAGGTATT
ACGCCTTCATATTGATGTATACTTCACAAGCGGCATCGTTGTGTTGATGA
AGTAAATTCAAACAACCGTCGTCACGCCAAAGACCGAGGTGTCCCATCTG
TAGAGGGGTCTGATGCTTTTTCGGGAAGCATGTCGTGCGACAATCGGCTG
TGCCATTAAGGTGCCAGCAAAGCCGAAACACAAAACCGCTACCATTTTTG
TTTTTTCTATGCCATTGCAACCTTCATTTTCGACAAGAGACAAGCAGTAT
CTTGCATGGCAACGAAACGAACGTAGTGGCCAAAATTGGACTACCCGACT
ACTTTCCTGCCATTTCCGAGTGCACGTCTTACTAAGCGACCTGAATGGCC
CCAGGACGTAATCGCGTTGGCCAAGGCAAGTCGCCACCCGGCGCTGGCCA
CTTTACCGCCGCGTACGCCTGGTTGTTGTCACTCAACTCGTGGAGGTACC
CAACTTTCAAGCACCCTTCACCCGTTCATGGTCGAACAATCACGATCCCC
CCGACGAACGGCCCACACCCGCGTCAACGCGCTGTTCAATACTCCGCTGC
CCACGGCCATCCACGACACTTGTGTGCTTCTTCACATTAATGCAAGATAT
CTCTATCTGTCTCTCGTTCTCTCTCTCGTTTCCTCTGTCTGTTTGTCTCC
AGCAAGAAATAACAGCCACTCAGTTTCACTTATCAGCACGTAATAGTCGG
ATTGGAAAGTGCAGTGGTGTGCTTACCTCAGTGAGATGCGAGGTGGAGCT
GCCGTGGTATCGGTTTGTACGAACTGCTGAAGAGGTCGGCTGTGGGGGCA
TTGAACCGGCCATTTTGGGGTAGAGGGTTATGGGGTAGAGGGTGTGTGTG
AAAATCGGGTACCTCCACGAGTTGAGTGGGGGTATACCTGGCAGAAAGGT
GGCCAGCGCCGAGTGGCGGCTTGCCTTGATCAATGAGATGGCGTCTTTGG
GTCATATCGGTAGCGCAAGGCAAAGTGTACCCGTGTATGGCCGAAAAGTC
GGACTTACCCGATTTTGGCCACTGCTCAATAGACAGATTGTGTTTCCCTG
ACGAGGAGTTGCTACTGTTGCGACTGACACTATTCTCGTCGTCTCTCTTC
AACGGAGGCCGCCGCGCCTGCTCCGAGAGCGGCAGGAGTTTCTCTCTCTC
CGCCTCCACCAAAGCCTCATTCAACGTCACGAGGCCACGAGGTACTGTTT
TACGAGTACTCGTGGCTGCTGGATGAGCGATTGCATCGGCCGCCGTCGCC
GCCGCCGTCCGCCGATCCCGATACCACCGCACGTTCTTCTCTATCTCCGG
AATCCCGCAGCCGTCACTCAGAACCGATGTGACCGCCGTACCGGCTCCGG
GAATTCGGAGGCCGAATACAGTGTCGACGCAGCGCCGGTAGGACGACCGC
GGGGGTTGCGAAAGTAACGACTGCGGGGACTAGGAGGCCACCTACGACGT
ATTGCGGTGCCGGGACGCCGACGGCGGCAGGTGCAATGAGTCGTACGCAG
CCGCGAGAACTCGCGAAACAGCACGTCTCGGCCACATGATGTCGGGAGAG
GCTTCGGTGGAGGAAGCGGCGGCGCCGTGGGCAAGCCCTAGGATTGCCCG
CCCGGTTTCTCGATTGCACACCTTGGCGTGTGAATGGCCTCCCGTTTTCC
TTAGGGTTGTTCTTCGAAACTCCTGGTTCGCTATTTTTGACGAATGTAAA
CAGGTCGGCTGTGCGTACCGTTATGTATCAGCTGTAATTGAACCCGGTCC
TCAAAATCCACCAACCAGAACTTCGTACGCTATCTCTTCATCGACAATTC
CACCTCCCACTGCGCGGTATCTCATTAAAAGTATTTTCCCCTCGCCCCTC
TTTAAAATTTCGCATCCCAGATCTACATTTACGCTCGAAACGCGCGATTC
TTCGAGAGCGATGAAGAATCGGCCACGAAGATCCTCGAGGGTCACGGCGA
GAACAACGCTAGCAATGCCGCAACATCTGCAGGCGCCCCTTCAGCCGGAG
CGAAGGACACCAAGACGGCAGAAAGCCAAAAAATCCAGGCGCCGTCGCCA
GCGGGTGTCCCCGGGCTCGTGGTGGTTTCGGGCCCGCCACCGACAGCGCC
AGAGGCCGGATCGCTGGCGGTCGTTTTATTCTTCGCTACGTGGTGCGTGA
GCTGCGAAAAAAATTTGCCGTCCTTCCTGGCCAAGGCAGCGAGGTATAGC
GACGAAGGTGGGTGACGCTAAGGAAGGAGTCAATCCCTTTCGTTGTCCGG
TTAGATATAAATTGTGGCCAAGCTTAGCTTCCGCTCGCTCAGCGCAAGCT
GGTTCTTACGAACACGACGGCCCGAAGTTCGGTTGTCCAATCCGGAGAGC
GGAGCCACGCCTTTTACACTTGTCTCGTTCATATTGCGACCAATTTGCTC
CCGGCCAGTGTCAACTATCACAACGCGTCTTTAAGATGGAGGAGTATGCG
AGGATCAAGTTGGGGTTAGGGTTTACATCCTGAGGGCAGAATATTGTTTT
CCTTTGGAGCTTGGGGCGATGGCTGCTCACACAACCGTTTACTTTCCCGT
ACGCGTACCAGGCGTAAGCTTTGCTGGCGTGACCCAGGAGGGAGAAGACG
ACCTCCGATACTTTGTCGAGACGTACCAGCGCCCCCTGCGGTCTGTTACC
TTCCTCGCTGACGAGCAGGGCGTGCTGACAAAGGGCTACCAGGTTGGTGC
TCGCTGCTGCTGTTTTTTATTATATAAAATATTTTCACGCTCAATCTGAG
CGATTCTGAGGCCACCCAACCCCTCTCGCACCGGGCATGATGTAATCTTC
ATTTCCGCATGACCATGAGTCACCACCTACGGTAGTCGTCTACTATCATA
CTACGTGCTCAACTGCACGTCAGAGACGGAAACGATTCTTATCTTGGTAT
CCACGAAAAGTGGAGGATCTCTGCCATTTGTCGCCTCGTAGCTGGCGAGC
AGGGTAACATCTCGGATAGCCACCGACTCTGATGCTGGCGTTCGTCCATG
CGCTCCATGCTTATCCGCCTTTTCAAGGTGGTGTTATATAGGAGTAGCAA
CGTCAAGCCCCCCCCCCCTCGAATCGCCTCGTCATTCACACTTGACGCCC
CGAAAAAGGGGCGCCCTCTGCCCACCGCACAGTCAGCGTGCATTGATGTA
CGATAATTTTGCTCTACTTCCCGAGTGTGAAGGGCGTTCACGCCGTCAAG
TCCCTACCGGTACCCATGTATTATTGGGCTGGAGTGAAGTAAGACGAACA
CTTGTGTGAACGAGACAAAACCATACCTATCATAACAACGCAGCAAATGG
GCTGCTTGTTTTTTCCGTGCCTCACACCAAGCAATGCACGGGATGCGCAC
ACAATACAGATAACTACTCGTACCCCCCCTGATGTATGTGTATGTACATA
GAAACGCTATTATATGATACGCCTACAAACGCCTCCGTGTGGTGCTTGAC
TAAACCATACTTTTGAAACCGCCGCACAGGGGTGTGTATCAAACCAAGAA
CACAGCACCCGCCGGAAATCCTTTTGCATTTGTCCCCGCATTTCATCCCA
CCGCTTTCAGCGGGGACAACTAGTTATTCGACTCCAAATATTACCGAACA
CCTTGCAGGGTGCGCACGAAACCAAGACTATTCCTCACTGCTACATCGTG
AGGGGGACGGGCGGGGGCGACGGAGAGGGCGGATGTGGGGTGGTAGAGTG
GCACGGGCACCCGGCAAGATTGGAAACAGCCCTGGCCTATCTTATGGACG
ACGAGGACGAGGAAGAGACGGGGGCGGAGTCAGCTGTTGGGGACGGGGTT
CGAGCATAGTAGCTGTGGGGTAGAGCTGCCTTGTAATTAAGAGTAGAGTC
ATGTGTGGTCCCGTGGGGACGTTTCCGGTCGGGAGCATCTGGGGATAAAC
CGAAGTCAATCACCGAAAAAACACACATCGATTGATCCTCCCGAAATAAC
GAGTCGACAGTGTAGCGCGCATGGACGGACGCCCACTTGAATAACAAAAA
CAACCCTCGCCGGGCACCTTCGCGAACACCTCGAGACATTTTAGCCACTT
CCCGCCAAGAATACCCTGAGCACTCGGTCCGAGATCAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig202:332282..339870+

>mRNA_P-littoralis_Contig202.68.1 ID=mRNA_P-littoralis_Contig202.68.1|Name=mRNA_P-littoralis_Contig202.68.1|organism=Pylaiella littoralis U1_48|type=CDS|length=807bp|location=Sequence derived from alignment at P-littoralis_Contig202:332282..339870+ (Pylaiella littoralis U1_48)
ATGTTTCGGATATTCGATCCCTATGCCATGGCCATCAGCTTCCTCGTTGG
TGGTGTGGGCTTCGGCATGACCTTTTTCTTCAATACCGCTGTTTCGGAGT
GGGGAGCACAGGAGATCCTCTATCCTGCGATGGCGATGATCTACATTTAC
GCTCGAAACGCGCGATTCTTCGAGAGCGATGAAGAATCGGCCACGAAGAT
CCTCGAGGGTCACGGCGAGAACAACGCTAGCAATGCCGCAACATCTGCAG
GCGCCCCTTCAGCCGGAGCGAAGGACACCAAGACGGCAGAAAGCCAAAAA
ATCCAGGCGCCGTCGCCAGCGGGTGTCCCCGGGCTCGTGGTGGTTTCGGG
CCCGCCACCGACAGCGCCAGAGGCCGGATCGCTGGCGGTCGTTTTATTCT
TCGCTACGTGGTGCGTGAGCTGCGAAAAAAATTTGCCGTCCTTCCTGGCC
AAGGCAGCGAGGTATAGCGACGAAGGCGTAAGCTTTGCTGGCGTGACCCA
GGAGGGAGAAGACGACCTCCGATACTTTGTCGAGACGTACCAGCGCCCCC
TGCGGTCTGTTACCTTCCTCGCTGACGAGCAGGGCGTGCTGACAAAGGGC
TACCAGGGTGCGCACGAAACCAAGACTATTCCTCACTGCTACATCGTGAG
GGGGACGGGCGGGGGCGACGGAGAGGGCGGATGTGGGGTGGTAGAGTGGC
ACGGGCACCCGGCAAGATTGGAAACAGCCCTGGCCTATCTTATGGACGAC
GAGGACGAGGAAGAGACGGGGGCGGAGTCAGCTGTTGGGGACGGGGTTCG
AGCATAG
back to top