mRNA_P-littoralis_Contig202.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.62.1
Unique NamemRNA_P-littoralis_Contig202.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:266282..266950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size561
Hectar predicted targeting categoryother localisation
Exons2
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.2389092-CDS-P-littoralis_Contig202:266281..2665541680789990.2389092-CDS-P-littoralis_Contig202:266281..266554Pylaiella littoralis U1_48CDSP-littoralis_Contig202 266282..266554 +
1680789990.2514906-CDS-P-littoralis_Contig202:266662..2669501680789990.2514906-CDS-P-littoralis_Contig202:266662..266950Pylaiella littoralis U1_48CDSP-littoralis_Contig202 266663..266950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.62.1prot_P-littoralis_Contig202.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 266282..266950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.62.1

>prot_P-littoralis_Contig202.62.1 ID=prot_P-littoralis_Contig202.62.1|Name=mRNA_P-littoralis_Contig202.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
AAVKGGQHDLVKHLVLQGQSPRTCDRQGSQAIHHAARLGYEPLVSLLLEH
GAGAIPLDGSGLTPLHLAAREGHAGVVEILLDVGADARARCAATGYAAMR
HAAEHNQVASIDVLFEAGANLELQDTKGCTALHVAAASPDCEAAVEALLR
HGADKEKLNNGGLTPLLVAIQKGHEASVMALIAAGAD
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mRNA from alignment at P-littoralis_Contig202:266282..266950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.62.1 ID=mRNA_P-littoralis_Contig202.62.1|Name=mRNA_P-littoralis_Contig202.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig202:266282..266950+ (Pylaiella littoralis U1_48)
GCAGCAGTGAAAGGTGGGCAGCATGATCTCGTAAAGCACCTGGTGCTGCA
GGGGCAATCTCCCCGCACTTGCGACCGGCAAGGATCGCAGGCAATCCATC
ACGCCGCTAGGTTAGGCTACGAGCCGCTCGTGTCTCTACTCCTTGAGCAT
GGGGCAGGAGCAATCCCGCTTGACGGAAGCGGTCTGACTCCGCTTCATTT
GGCAGCGAGGGAAGGTCATGCCGGTGTGGTGGAGATACTGCTGGACGTCG
GAGCCGATGCCAGAGCTCGATGTGTAGTTGACGGGCTGCAGCTGCCGCTG
GACCTCGCCGCCGTGGGCGGGCATGTCGATGTGATCTCGGTATTCACTCG
ACAAGACCCAGAGATCGTCAACGACACGGAGGCTGCCACTGGGTACGCCG
CTATGCGCCACGCCGCTGAGCACAACCAGGTAGCTTCGATCGATGTGCTC
TTCGAGGCGGGGGCCAACCTGGAACTCCAAGACACGAAAGGGTGCACTGC
TCTCCACGTCGCGGCCGCCTCCCCCGATTGCGAGGCTGCCGTAGAGGCTC
TGTTGCGGCACGGCGCAGACAAGGAGAAACTAAACAACGGGGGGCTGACT
CCGCTATTGGTAGCAATCCAAAAGGGCCACGAGGCTTCGGTAATGGCTCT
CATAGCTGCTGGGGCAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:266282..266950+

>mRNA_P-littoralis_Contig202.62.1 ID=mRNA_P-littoralis_Contig202.62.1|Name=mRNA_P-littoralis_Contig202.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig202:266282..266950+ (Pylaiella littoralis U1_48)
GCAGCAGTGAAAGGTGGGCAGCATGATCTCGTAAAGCACCTGGTGCTGCA
GGGGCAATCTCCCCGCACTTGCGACCGGCAAGGATCGCAGGCAATCCATC
ACGCCGCTAGGTTAGGCTACGAGCCGCTCGTGTCTCTACTCCTTGAGCAT
GGGGCAGGAGCAATCCCGCTTGACGGAAGCGGTCTGACTCCGCTTCATTT
GGCAGCGAGGGAAGGTCATGCCGGTGTGGTGGAGATACTGCTGGACGTCG
GAGCCGATGCCAGAGCTCGATGTGCTGCCACTGGGTACGCCGCTATGCGC
CACGCCGCTGAGCACAACCAGGTAGCTTCGATCGATGTGCTCTTCGAGGC
GGGGGCCAACCTGGAACTCCAAGACACGAAAGGGTGCACTGCTCTCCACG
TCGCGGCCGCCTCCCCCGATTGCGAGGCTGCCGTAGAGGCTCTGTTGCGG
CACGGCGCAGACAAGGAGAAACTAAACAACGGGGGGCTGACTCCGCTATT
GGTAGCAATCCAAAAGGGCCACGAGGCTTCGGTAATGGCTCTCATAGCTG
CTGGGGCAGAC
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