mRNA_P-littoralis_Contig202.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.6.1
Unique NamemRNA_P-littoralis_Contig202.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig202.6.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.030e-16
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:  336 DNVSCVLARTIRSNLHQEVAKLIGCTGMGNQCKRGQCFARAMQMFPGKGMDRIPTEVVLALLKH 527
            DNVS VLART+R  L    A+ IG +G GNQC+RG CFARAM MF GKGM+ IP +VVLALL++
Sbjct:  160 DNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.030e-1664.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:19741..22007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size686
Hectar predicted targeting categorysignal peptide
Exons3
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.473032-UTR-P-littoralis_Contig202:19740..198961680789990.473032-UTR-P-littoralis_Contig202:19740..19896Pylaiella littoralis U1_48UTRP-littoralis_Contig202 19741..19896 -
1680789990.5473063-UTR-P-littoralis_Contig202:21843..220071680789990.5473063-UTR-P-littoralis_Contig202:21843..22007Pylaiella littoralis U1_48UTRP-littoralis_Contig202 21844..22007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.508479-CDS-P-littoralis_Contig202:19896..201291680789990.508479-CDS-P-littoralis_Contig202:19896..20129Pylaiella littoralis U1_48CDSP-littoralis_Contig202 19897..20129 -
1680789990.520351-CDS-P-littoralis_Contig202:21130..211821680789990.520351-CDS-P-littoralis_Contig202:21130..21182Pylaiella littoralis U1_48CDSP-littoralis_Contig202 21131..21182 -
1680789990.534001-CDS-P-littoralis_Contig202:21762..218431680789990.534001-CDS-P-littoralis_Contig202:21762..21843Pylaiella littoralis U1_48CDSP-littoralis_Contig202 21763..21843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.6.1prot_P-littoralis_Contig202.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 19897..21843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.6.1

>prot_P-littoralis_Contig202.6.1 ID=prot_P-littoralis_Contig202.6.1|Name=mRNA_P-littoralis_Contig202.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MSRAEHPRPETLLLAAAAAAAAAASAELSSRGVPPSQESDAQGTRRAGSP
KGEGGKYDNVSCVLARTIRSNLHQEVAKLIGCTGMGNQCKRGQCFARAMQ
MFPGKGMDRIPTEVVLALLKH*
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mRNA from alignment at P-littoralis_Contig202:19741..22007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.6.1 ID=mRNA_P-littoralis_Contig202.6.1|Name=mRNA_P-littoralis_Contig202.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2267bp|location=Sequence derived from alignment at P-littoralis_Contig202:19741..22007- (Pylaiella littoralis U1_48)
CGGACTCATCAACGCTGTGCTTTCGCTTTCACCAAGAAAACACACCAGGT
GTGCACTCGTGCGTGCACACTCAACGACCTCTTGTCCCTGCTGCTTATAT
GCCTCATCACGACTGATGTTGACAAGCGTGCGGCAAGACGCGTGAAGCCC
TCCGATGCCGTCCGATGTCAAGAGCTGAACACCCGAGACCGGAGACTCTA
CTGCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTGCTGAGGCCCA
ATCTTATGGTAGATGGGCAGCTGGAATTTCTCGACTTGGAAAAGCGTTTT
CCAAGCCTGATATTCCAAGTCGGACAATCAGACTGGTGCCAACTTTATGG
GAGAACTGGAAAATTTGGGCAGCGATTGGAAATCAGATGGGGTTGCAGGA
TGGACGGCAGGCGGTTTGGGCTATTTCGATAAACTGCTGCTGGTGGCGCA
GAGCGGCGAGCGTTATCGCCAGCACAGCCAGGATCGCACGTCGCTTTGGT
ACCTGCACCTGGCCAGTGTGTTTGGGTGCTCGGTTGTTTGTATTTGTGCT
TGTTGTGTGTGCTGTGAACCACTGCGGCGGAACCTCGTGGCTGCGCGCGC
GCGACGGATTCCAGGCCTGGAATCCAGGTCATTTGGCCTGGAATCCGAGG
GCAGATTCCAGGCGAGTCGCCTGGAGTCCGGAGAACTGGAAAATATTTTC
CAGTTTCGGCCGAAAACAACCCCCATAAGATAGAAATATTTTCCAGGCCT
GGAATTTGGATTCCAGTTCCTCATGTGAAACCCTTGGATTCCAGTTTTCG
GCTCTACCATAAGAGTGGGCCTGAGCTAAGTAGTCGTGGAGTTCCTCCTT
CCCAGGAGAGCGATGCACAAGGCACACGTGAGACTAATGCAGCGGATACG
CCTGCTGGTAATGGCAGTTACGTAGCCGGGTCATAGACACCAGAATAGGA
GTTTGGAGACGAGCTGGTGACGCTTCTCGGCACCCCTCCTTCGACTGACT
ACAGCAGTACTCCAAAGCTTTGGCGGCCGCGATGTTGGAGTAGGCAACAA
ACGACCCCCTCCCACATCCGCAACTGAATAGAACAGCAAGTATCCGAGGC
TGCAGGAGAGTGCGAATGCGAGGTGCCTCTCCCGAGGTGGGACAAGAAAC
ACCCCAACCGGACGATAACTTGCGGCAATCAACAGGGCTTCCTCGTGTCA
CAACTACGACTACTACAGTAGACAACCAGGTGTGTGTGCATTATGTTTGT
GGAAGAGAGACCTCTTTCGCCAGCGGTATGATATGACATGTTCGGAATGA
AACATTTCAACCCAAACAACGGCAGCCGTAGGCAACGGCAGTGTTAAACT
TACGAATCACAAGAGACAACACGAGCTGAAGACAACAGCAGCATCGGTAT
TTGAACTAGGCTCTCTGCCTTTCACGAGTCATCCTGTTATCATACTTACC
CGCTTCATAGATAGTTGAAGAAAAACTGCTCACTGAAAGCCACATGTGTC
ACCACACCAAAAATGCCTGCTGTTCACAGGGGTTGCTGGACACATAAACT
GCACGAACAGCGGACGATCTGTAGTAGTATCGAGCGGCATGTTTGATGAT
GTTGTTGCCGATGCTCGTTGGTAGTCTAGTACGAAGTATTTAAACATGAT
GCCATCAACGAAGTTATCGAAATTGACGCTGACATAAAATCACACAAAGA
CAGCAGTCAGTAGCACTCGAAAACATCGCTCGGGTGTGTTTGGGGTCGTA
GTTCCAAGAGGCGGTTGGAGTTCATTTGATGTCTCGATGTTTCTTCGGCT
ACTGAACATGCTCAGTATGCTCAGTGAATAAAACACCCCCCCCCCACCCT
CGCGTCCCCGAAACGCATGACCTGACAGGGCGTGCTGGATCGCCAAAAGG
AGAGGGAGGAAAATACGACAACGTGTCGTGTGTCCTTGCTCGCACGATCC
GCAGCAATTTGCACCAGGAGGTGGCGAAATTGATCGGGTGTACGGGCATG
GGTAATCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAGATGTT
TCCCGGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTCTAGCACTGT
TGAAGCACTGATGATGGTTGCGAACTGCTGCCGGGGAAATAGCAACTGCT
GTATTTCGTAGAGATCTCGAAAACTGTTGTAATCAGGGAAAGCACCGGCA
TGCAGAGGGTGCTGAACACGTTGCGGATCAGATAAGTCGTGGTCAAGTGG
CGACTTCGCATGGTGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:19741..22007-

>mRNA_P-littoralis_Contig202.6.1 ID=mRNA_P-littoralis_Contig202.6.1|Name=mRNA_P-littoralis_Contig202.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig202:19741..22007- (Pylaiella littoralis U1_48)
ATGTCAAGAGCTGAACACCCGAGACCGGAGACTCTACTGCTTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCTCTGCTGAGCTAAGTAGTCGTGGAGTTC
CTCCTTCCCAGGAGAGCGATGCACAAGGCACACGGCGTGCTGGATCGCCA
AAAGGAGAGGGAGGAAAATACGACAACGTGTCGTGTGTCCTTGCTCGCAC
GATCCGCAGCAATTTGCACCAGGAGGTGGCGAAATTGATCGGGTGTACGG
GCATGGGTAATCAGTGCAAGCGTGGGCAGTGCTTTGCACGAGCGATGCAG
ATGTTTCCCGGAAAAGGAATGGACCGAATACCCACTGAAGTGGTTCTAGC
ACTGTTGAAGCACTGA
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