mRNA_P-littoralis_Contig202.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.54.1
Unique NamemRNA_P-littoralis_Contig202.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: A0A6H5KHT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT9_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 6.820e-61
Identity = 178/374 (47.59%), Postives = 220/374 (58.82%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGAGA-IPLDGRGLTPLHLAAREAHAGVVEILL-DAGADARARCVVDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALIAAGADF--RPLDTHYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAIDFLVASGANLEATFDDTGVTPFHGASQSAGNLAAIAAXXXXXXXXXXXXXXXXXXXXXXXAENCYFEGSPGTVDALLKAGADETLVNAAGQTPADLLE--FTVDDKGWSNEAVERTLTLL 1104
            +H A+ LG++ +VSLLLEHGA   I  DG G+TPL LAA+E H  VV  LL DA  D   R    G +  LDLAA+GGH DVIS    R  ++++ T   TG++A+ HAA H+ V SID LV AGANLE +D  GCT L VAA     +AA                        A++      A AL+AAGAD   R     YS L+ A+ S  +DL   ++Q G+  +E   +S G T LHWA W   A A+D LV +GA+LEA   D  VTP H A++ AGN      XXXXXXXXXXXXXXXXXXXXXXX +NC  E S  TVDALLKAGADET ++  GQTP D+LE    V D   +N A E T ++L
Sbjct:   23 LHLASGLGHDLVVSLLLEHGADPNIDTDGDGMTPLLLAAKEGHVRVVVALLSDARVDVGQRHGAGG-RSALDLAAIGGHADVISAIVERQPDVLDSTSDDTGFSALHHAANHDAVHSIDALVKAGANLENRDAEGCTPLRVAAGCAS-EAAXXXXXXXXXXXXXXXXXXXXXXXDAMENDLWGIATALMAAGADVNVRRGSNGYSPLDCAVRSGGMDLTRQVLQRGAIATE--SASDGCTALHWAGWNMNASAVDLLVGAGADLEAKLADEEVTPLHLAARQAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNCTTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAVGDVVGAN-AAEHTRSML 391          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: D7G0W1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W1_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 5.920e-44
Identity = 159/375 (42.40%), Postives = 199/375 (53.07%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGAGA-IPLDGRGLTPLHLAAREAHAGVVEILL-DAGADARARCVVDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALIAAGADFRPLD--THYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAIDFLVASGANLEATFDDTGVTPFHGASQSAGNLAAIAAXXXXXXXXXXXXXXXXXXXXXXXAENCYFEGSPGTVDALLKAGADETLVNAAGQTPADLLEFTV---DDKGWSNEAVERTLTLL 1104
            +H A+ LG++ +VSLLL+HGA   I  DG G+TPL LA++E H  VV  LL DA  D   R   +G    LD                                                 V AGANLE +D  GCT L VAA     +AA+ ALL+HG  KE    + LTPL  A++      A AL+AAGAD    D    YS L+ ++ S  +DL   ++Q G+  +    +S G+T LHWA W   A A+D LV  GA+LEA     G TP H A++ AGN      XXXXXXXXXXXXXXXXXXXXXXX +NC  + S  TVDALLKAGADET ++  GQTP D+LE  +   D  G S    ERT ++L
Sbjct:   21 LHRASGLGHDLIVSLLLKHGADPNIDTDGDGMTPLLLASKEGHVRVVVALLSDARVDIGQRHG-EGGHSALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNAGANLENRDAKGCTPLRVAAGCAS-EAALLALLRHGDDKESTGVDGLTPLQDAMENDLWGIATALMAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATA--SASDGYTALHWAGWNMNASAVDLLVEVGADLEAKVALDGCTPLHLAARQAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNCTIKSSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASANEAERTRSML 391          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: D7G3P2_ECTSI (Similar to ankyrin 3, epithelial isoform e isoform 19 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.240e-35
Identity = 113/298 (37.92%), Postives = 161/298 (54.03%), Query Frame = 1
Query:    4 HH---AARLGYEPLVSLLLEHGAGAIPLD-----GRGLTPLHLAAREAHAGVVEILLDAGADARARCVVD----------------GLQLP---LDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGC-TALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALIAAGADFRPLDTHYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAIDFLVASGANLEATFDDTGVTP 813
            HH   A R+  + +VSLLLE GA A P D         TP+HLAA+   AG+V +L+DAGA A  RC  +                G+++    L   A+GGHVDVI    +R    ++    +TGY A+ +AA+H+Q+  ID LV AGA+LE +   G  TALHVAA  PD +A + ALL+HGA  + + N   TPL VA++  +  +A AL++AGAD R        L  ++E    D++  L+  G+  +    +S G TPLH AA   F   +D L+ +GA+ E   +  G TP
Sbjct:   92 HHLQVALRICDKAMVSLLLELGADADPEDHWTYGDLFFTPIHLAAKAGQAGIVGMLMDAGACAD-RCANEDASTWEQRYDPEYDWSGIRMTENALHFGAIGGHVDVIDEIIKRQPLTMSSVAESTGYTALHYAAKHSQLGVIDALVEAGADLEAEGGLGVGTALHVAAEFPDSEATLLALLRHGAKVDPIRNGSETPLSVAVKARNVCAAKALVSAGADVRE-----HLLRESVECSQHDMLLALLGRGAHVNTK-GASDGNTPLHLAAEKSFRVKVDVLLQAGAD-ETAVNHKGQTP 381          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.490e-25
Identity = 79/188 (42.02%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  559 IAAGADFRPLD--THYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAIDFLVASGANLEATFD-DTGVTPFHGASQSAGNLAAIAAXXXXXXXXXXXXXXXXXXXXXXXAENCYFEGSPGTVDALLKAGADETLVNAAGQTPADLLEFTV---DDKGWSNEAVERTLTLL 1104
            +AAGAD    D    YS L+ ++ S  +DL   ++Q G+  +E   SS G T LHWA W   A AID LV +GANLEA    D   TP H A++ AGN A I A                       A+NC  E S  TVDALLKAGADET ++  GQTP D+LE  +   D  G S    ERT ++L
Sbjct:    1 MAAGADVNVRDGSNGYSPLDCSVRSDGMDLTRQVLQRGAIATE--SSSDGCTALHWAGWNMNASAIDLLVGAGANLEAKIAADAEATPLHLAARQAGNAAVIEALARHGADVHAQETPSGNTPLHVAAQNCTTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEAERTRSVL 186          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-16
Identity = 81/259 (31.27%), Postives = 119/259 (45.95%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGAGAIPLDGRGLTPLHLAAREAHAGVVEILLDAGADARARCVVDGLQLP-LDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMA----LIAAGADFRPLDT-----------HYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAW 729
            +H AA  G E  V+ LL  GA    LD +G TPLHLA    H   V+ LL A  D   R  +       LDLAA  G   V+    +  +++   T+   GY ++  AA +N+VA+IDVLV AGA++E++D   CT   + A    C  A  AL +HG+  E  +    TPL++A ++       A    L+  GAD   L+            H       +  + ++ V  L++N  +P +      GF  L  A W
Sbjct:   42 LHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRTD---GYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPF-LDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLEN--APVDRAWRRRGFLVLCRAFW 294          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.970e-16
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGAGAIPLDGRGLTPLHLAAREAHAGVVEILLDAGADARARCVVDGLQLP-LDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALI 561
            +H +A  G E  V+ LL  GA    LD +G TPLHLA    H   V+ LL A  D      +       LD AA  G   V+    +  +++   T+   GY ++  AA +N+VA+IDVLV AGA++E++D   CT   + A S  C  A  AL +HGA  E  +    TPL++A ++       A++
Sbjct:   91 LHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHYRIWNRSYSVLDFAAQKGDACVLRAILQHGVDVNRRTD---GYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPF-LDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIV 274          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: A0A2V8L3T8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8L3T8_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 3.900e-14
Identity = 91/287 (31.71%), Postives = 133/287 (46.34%), Query Frame = 1
Query:   46 LLEHGAGAIPLDGRG-LTPLHLAAREAHAGVVEILLDAGADARARCVVDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEI-------------LNNEELTPLLVAIQKGHEASAMALIAAGAD-FRPLDTHYSALELAI-------------ESKSI-DLVNVLIQNGSSPSEPLDSSG--GFTPLHWAAWFDFAPAIDFLVASGANLEATFDDTGVTP 813
            L++HGA     + RG  T L  AA   H  +V++L++ GAD RAR   D    PL  AA  G V+          ++  +       A M  AA  N   S+ +L+  GAN +L D  G TALH AA+       V+ALL HGA                 ++++  TPL +A   G+  +  ALIA GAD F   D   + L +A              E K++ ++  +L+  G+     ++S+G  G+T LH AA+      + FLV  GA +E  FD+ G TP
Sbjct:   13 LVDHGANVNVKESRGGQTALMWAAANKHPEIVKLLVEHGADVRARSKGDFT--PLLFAAQQGDVESGRTLLGAGADVNENRRKDRMTALMVAAASGNNEFSV-LLLEKGANPDLADEIGYTALHYAASDEKRVDVVKALLAHGANPNARTTRDAPRTNNSGVSSKGATPLFLAASLGNVETVRALIAGGADPFVTTDEKTAPLHVATWGGNPYNRDWTEEEKKNLFEVTKLLLGLGAD----VNSAGEQGWTALHGAAYKGLDSVVRFLVEKGAKMEV-FDEYGQTP 291          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: A0A2V8DR59_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DR59_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.980e-13
Identity = 76/234 (32.48%), Postives = 112/234 (47.86%), Query Frame = 1
Query:  202 PLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEI-------------LNNEELTPLLVAIQKGHEASAMALIAAGAD-FRPLDTHYSALELAI-------------ESKSI-DLVNVLIQNGSSPSEPLDSSG--GFTPLHWAAWFDFAPAIDFLVASGANLEATFDDTGVTP 813
            PL  A+  G V    +  +  +++ + + T    A M  AA  N+  S+  L+  GAN +L D GG TALH AA+  D    V ALL HGA+  +             +N    TPL +A  +GH  +  AL+A GAD F   D   + L +A              E K++ D+  +L++ GS+    ++S G  G+T LH AA+      + FLV  GA +E  FD+ G TP
Sbjct:  192 PLLFASQQGDVQSGRLLLQAGVDVNDRSSTDRKTALMVAAASGNRAFSV-FLLEKGANPDLSDDGGFTALHYAASDKDGADIVRALLMHGAHPNLRTTRDSREYVYAGVNLTGATPLFLAASRGHVETVRALVAGGADPFITTDNGTAPLHVATWGGSPYFRDWTEDEKKNLFDITKLLVELGSN----VNSVGEHGWTALHGAAYKGVDGVVRFLVEHGARMEV-FDEYGQTP 419          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: UPI00201F5B46 (ankyrin repeat domain-containing protein 17-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F5B46)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-12
Identity = 78/272 (28.68%), Postives = 137/272 (50.37%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGAGAIPLDGRG---LTPLHLAAREAHAGVVEILLDAGADARARCVVDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRH---AAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNN---EELTPLLVAIQKGHEASAMALIAAGADFRPLDT-HYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGG--FTPLHWAAWFDFAPAIDFLVASGANL 780
            +H A + G   +V  +L    G + ++ RG   +TP+ LAA + H  VVE+L+  GAD     +  G    L LA  GG+V+V+       ++ +N    + G+  M     AA+      +++LV  GA++ L D G  T LH+A    + +  V+ +L  G   + +N+   +E+TP+++A  KGH+     L++ GAD   LD  H + L LA +  ++++V  ++  G      ++S G    TP+  AA       ++ LV+ GA++
Sbjct:  284 LHLACKGGNVEVVKFVLS--LGMLSINSRGWQEMTPVMLAADKGHKEVVELLVSKGADVS--LLDKGHDTLLHLACKGGNVEVVKFVLSLGMQSIN----SRGWQEMTPVMLAADKGHKEVVELLVSKGADVSLLDKGHDTLLHLACKGGNVEV-VKFVLSLGM--QSINSRGWQEMTPVMLAADKGHKEVVELLVSKGADVSLLDKGHGTLLHLACKGGNVEVVKFVLSLGMLS---INSRGWQEMTPVMLAADKGHKEVVELLVSKGADV 541          
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.740e-12
Identity = 96/360 (26.67%), Postives = 151/360 (41.94%), Query Frame = 1
Query:    1 IHHAARLGYEPLVSLLLEHGA--GAIPLDGRGLTPLHLAAREAHAGVVEILLDAGADARARCV-VDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATGYAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAVEALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALIAAGADFR-----PLDTHYSALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAIDFLVASGANLEATFDDT--GVTPFHGASQSAGNLAAIAAXXXXXXXXXXXXXXXXXXXXXXXAENCYFEGSPGTVDALLKAGADETLVNAAGQTPADLLEFT 1050
            + HAA  G   LV  LL  GA  GA     RG T L  AA   +  VV  LL +G  +    V +   +  L +A++ GH            + VN  +      ++  A E      +D+L+  GA    +   G T LH+AAAS + +     L       + L++  ++PL+VA + GH ++  AL+ AGAD             +A+++A+    + ++  +++NG +       + G T LH A     A A+D L+ +GA++ A       G TP           A +A                        + +    G    VD LL+ GA ET VN  G TP+D+L+ T
Sbjct:   38 LEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGAD-VNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRAT--DTYGLTALHHARG---AQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLS---RGMDRMVDLLLRWGASETAVNKNGLTPSDILKVT 388          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHT9_9PHAE6.820e-6147.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0W1_ECTSI5.920e-4442.40Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G3P2_ECTSI5.240e-3537.92Similar to ankyrin 3, epithelial isoform e isoform... [more]
D7G0W2_ECTSI2.490e-2542.02Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
D7G6X8_ECTSI2.570e-1631.27Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE2.970e-1634.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V8L3T8_9BACT3.900e-1431.71Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A2V8DR59_9BACT1.980e-1332.48Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI00201F5B461.080e-1228.68ankyrin repeat domain-containing protein 17-like n... [more]
A0A6H5K1F4_9PHAE5.740e-1226.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:216040..217143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G0W1
PFAMsAnk,Ank_2
Model size1104
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.71e-45
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-23_002070.1
Descriptionspectrin binding
Cds size1104
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.0136805-CDS-P-littoralis_Contig202:216039..2171431680789992.0136805-CDS-P-littoralis_Contig202:216039..217143Pylaiella littoralis U1_48CDSP-littoralis_Contig202 216040..217143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.54.1prot_P-littoralis_Contig202.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 216040..217143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.54.1

>prot_P-littoralis_Contig202.54.1 ID=prot_P-littoralis_Contig202.54.1|Name=mRNA_P-littoralis_Contig202.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=368bp
IHHAARLGYEPLVSLLLEHGAGAIPLDGRGLTPLHLAAREAHAGVVEILL
DAGADARARCVVDGLQLPLDLAAMGGHVDVISVFTRRDLEIVNDTETATG
YAAMRHAAEHNQVASIDVLVGAGANLELQDTGGCTALHVAAASPDCKAAV
EALLQHGAYKEILNNEELTPLLVAIQKGHEASAMALIAAGADFRPLDTHY
SALELAIESKSIDLVNVLIQNGSSPSEPLDSSGGFTPLHWAAWFDFAPAI
DFLVASGANLEATFDDTGVTPFHGASQSAGNLAAIAALVSHGANIHARKE
PSGDTPLHVAAENCYFEGSPGTVDALLKAGADETLVNAAGQTPADLLEFT
VDDKGWSNEAVERTLTLL
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mRNA from alignment at P-littoralis_Contig202:216040..217143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.54.1 ID=mRNA_P-littoralis_Contig202.54.1|Name=mRNA_P-littoralis_Contig202.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1104bp|location=Sequence derived from alignment at P-littoralis_Contig202:216040..217143+ (Pylaiella littoralis U1_48)
ATCCATCACGCCGCGAGGTTAGGCTACGAGCCGCTCGTGTCTCTACTGCT TGAACACGGGGCAGGAGCAATCCCGCTTGACGGAAGAGGTCTGACTCCGC TTCATTTGGCAGCGAGGGAAGCTCATGCCGGTGTGGTGGAGATACTGCTG GACGCCGGAGCCGATGCCAGAGCTCGATGTGTAGTTGACGGGCTGCAGCT GCCGCTGGACCTCGCCGCCATGGGCGGGCATGTCGATGTGATCTCGGTAT TCACCCGACGAGACCTAGAGATCGTCAACGACACCGAGACTGCTACTGGG TACGCCGCTATGCGCCACGCCGCTGAGCACAACCAGGTAGCTTCGATCGA TGTGCTCGTCGGGGCGGGGGCCAACCTGGAACTCCAAGATACCGGAGGGT GCACTGCTCTCCACGTCGCGGCCGCCTCCCCCGACTGCAAGGCTGCCGTA GAGGCTTTATTGCAGCACGGCGCGTACAAGGAGATACTCAACAACGAGGA ACTAACTCCACTCCTGGTGGCAATCCAAAAGGGCCACGAGGCTTCGGCAA TGGCTCTCATAGCTGCTGGGGCAGACTTCCGTCCGCTTGACACGCACTAT TCTGCGCTGGAATTGGCCATAGAAAGTAAGTCCATAGACCTTGTGAACGT ACTAATTCAAAACGGGTCGAGCCCGAGTGAGCCGTTGGACAGTAGTGGTG GCTTTACGCCTTTACATTGGGCAGCATGGTTCGACTTTGCTCCCGCGATC GACTTTCTGGTCGCGTCCGGCGCCAACCTGGAGGCGACTTTCGACGATAC TGGCGTGACACCTTTCCATGGTGCCTCACAAAGTGCCGGAAACCTAGCGG CAATCGCTGCCCTCGTGAGCCACGGTGCCAACATCCACGCCAGGAAGGAG CCGTCCGGAGACACGCCACTGCATGTCGCCGCTGAGAACTGTTACTTCGA AGGTTCTCCAGGAACGGTGGACGCCCTGCTGAAGGCTGGAGCGGACGAAA CGCTCGTTAACGCCGCTGGCCAGACCCCGGCAGATCTGCTTGAATTTACC GTCGACGATAAGGGTTGGAGCAATGAAGCTGTCGAGCGCACCCTGACATT GCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:216040..217143+

>mRNA_P-littoralis_Contig202.54.1 ID=mRNA_P-littoralis_Contig202.54.1|Name=mRNA_P-littoralis_Contig202.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1104bp|location=Sequence derived from alignment at P-littoralis_Contig202:216040..217143+ (Pylaiella littoralis U1_48)
ATCCATCACGCCGCGAGGTTAGGCTACGAGCCGCTCGTGTCTCTACTGCT
TGAACACGGGGCAGGAGCAATCCCGCTTGACGGAAGAGGTCTGACTCCGC
TTCATTTGGCAGCGAGGGAAGCTCATGCCGGTGTGGTGGAGATACTGCTG
GACGCCGGAGCCGATGCCAGAGCTCGATGTGTAGTTGACGGGCTGCAGCT
GCCGCTGGACCTCGCCGCCATGGGCGGGCATGTCGATGTGATCTCGGTAT
TCACCCGACGAGACCTAGAGATCGTCAACGACACCGAGACTGCTACTGGG
TACGCCGCTATGCGCCACGCCGCTGAGCACAACCAGGTAGCTTCGATCGA
TGTGCTCGTCGGGGCGGGGGCCAACCTGGAACTCCAAGATACCGGAGGGT
GCACTGCTCTCCACGTCGCGGCCGCCTCCCCCGACTGCAAGGCTGCCGTA
GAGGCTTTATTGCAGCACGGCGCGTACAAGGAGATACTCAACAACGAGGA
ACTAACTCCACTCCTGGTGGCAATCCAAAAGGGCCACGAGGCTTCGGCAA
TGGCTCTCATAGCTGCTGGGGCAGACTTCCGTCCGCTTGACACGCACTAT
TCTGCGCTGGAATTGGCCATAGAAAGTAAGTCCATAGACCTTGTGAACGT
ACTAATTCAAAACGGGTCGAGCCCGAGTGAGCCGTTGGACAGTAGTGGTG
GCTTTACGCCTTTACATTGGGCAGCATGGTTCGACTTTGCTCCCGCGATC
GACTTTCTGGTCGCGTCCGGCGCCAACCTGGAGGCGACTTTCGACGATAC
TGGCGTGACACCTTTCCATGGTGCCTCACAAAGTGCCGGAAACCTAGCGG
CAATCGCTGCCCTCGTGAGCCACGGTGCCAACATCCACGCCAGGAAGGAG
CCGTCCGGAGACACGCCACTGCATGTCGCCGCTGAGAACTGTTACTTCGA
AGGTTCTCCAGGAACGGTGGACGCCCTGCTGAAGGCTGGAGCGGACGAAA
CGCTCGTTAACGCCGCTGGCCAGACCCCGGCAGATCTGCTTGAATTTACC
GTCGACGATAAGGGTTGGAGCAATGAAGCTGTCGAGCGCACCCTGACATT
GCTG
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