mRNA_P-littoralis_Contig202.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.37.1
Unique NamemRNA_P-littoralis_Contig202.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 5.680e-128
Identity = 206/284 (72.54%), Postives = 221/284 (77.82%), Query Frame = 1 
Query:  280 MQALRTGALAQGSLRAIRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEE-----SGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSS------CSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSGEI 1098
            MQALRT  LAQGSL+A+RGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDW    A     A  EE     SG+RRPRRRAFF ++VDGVPAGRVEFELASDLLPVTSENFLRLCNGV V + +                                     +LGY+GS IHRVV+GTGIMGGDVEGYGGKRSHSAFSG+RFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFY+TTE AGHLDGRSVAFGRVTKG+EVVRAV GMYSIRGKPVS+ITIE+ GEI
Sbjct:    1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAEERQQGGSGRRRPRRRAFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA)

HSP 1 Score: 227 bits (579), Expect = 2.110e-67
Identity = 127/267 (47.57%), Postives = 159/267 (59.55%), Query Frame = 1 
Query:  280 MQALRTGALAQGSLRAIRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITI 1080
            MQA R   +  G+LR  R   R S G GWY ++++ G DAF + R P PFDW A PA               PR+RA+ ++A+ G   G+VEFELASDLLPVT +NFL+LC G                                 G D   L Y+G+ IH +  G G+MGGDVEG  GK+SHS   G R+F DE F IPH++ GLLTMANSG+ TNGSQFYVT  PA H+DGRSVAFGRV  GM+VVR V G++S++ KPVS++ I
Sbjct:    1 MQAFRVATVVPGALRHTRM-ARGSRGWGWYLKHKQQGDDAFIRDRPPTPFDWDAAPAA--------------PRKRAYVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAAT------------------------------GPDGAPLTYKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGL-GKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVI 221
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 8.440e-54
Identity = 111/267 (41.57%), Postives = 151/267 (56.55%), Query Frame = 1 
Query:  340 TRASTGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRR-RAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDV---------------EGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSG 1092
            +R   GRGWY+ Y+  GP+ F++ R P PFDW + P+ AT  +         PRR + F  +++D  P GR+  ELA D+LP+ +ENF  LC G                + GG EG             +  LGY GS IHRVV G GI+GGD+               +  GG  +HS   G RFFPDE+F IPHT PGLL+M ++G H NGS F+++T    HLDGRSV FGRV  G+EV+ AV+  Y+IRG+PV+ + +E++G
Sbjct:   32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDW-SPPSTATPPS-------EAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAG--------------REGGREGG------------KTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 263
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.800e-52
Identity = 111/267 (41.57%), Postives = 151/267 (56.55%), Query Frame = 1 
Query:  340 TRASTGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRR-RAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDV---------------EGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSG 1092
            +R   GRGWY+ Y+  GP+ F++ R P PFDW + P+ AT       +    PRR + F  +++D  P GR+  ELA D+LP+ +ENF  LC G                + GG EG             +  LGY GS IHRVV G GI+GGD+               +  GG  +HS   G RFFPDE+F IPHT PGLL+M ++G H NGS F+++T    HLDGRSV FGRV  G+EV+ AV+  Y+IRG+PV+ + +E++G
Sbjct:  147 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDW-SRPSTAT-------TPSEAPRRSKVFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAG--------------REGGREGG------------KTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGL-GPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAG 378
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.330e-50
Identity = 103/259 (39.77%), Postives = 142/259 (54.83%), Query Frame = 1 
Query:  316 SLRAIRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSG 1092
            + RA+    + S+GRGWY++Y++ G + FRK   P PFDW    A +                  + DV+VDG   GRVE EL  ++LP+T+ NF +LC G         +P  L                           Y  + IH VV  + I+ GDVE   GK SHSA  G R+F DEA ++PHT  G+++M N G+ TNGSQFY+TT P+  LDG SVAFGRVT GM+VV +++ ++SIRG PVS +T+  +G
Sbjct:   56 AARAMGTAKQGSSGRGWYKKYEKEGEEGFRKYNPPTPFDWSEAGATSL----------------VYLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTGE--------NPDGLS--------------------------YADTPIHHVVKDSAIVAGDVELKTGKGSHSAL-GTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAG 263
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A7S1UAR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAR4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.930e-45
Identity = 95/248 (38.31%), Postives = 134/248 (54.03%), Query Frame = 1 
Query:  355 GRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSGEI 1098
            G GWY++Y++ GP+ FRK + P PFDW              +S     R+R FFDV VDG   GR+  E   D+LPVTSENF +L          + +P+                           L Y+ S IHR++  + ++ GDVEG  G+ SHSA  G R+F  E F +PH+ PG+++M ++    NGSQFY+T EP  HLDGR  AFGRV +GM++V+ + G +S    PVS I+  ++G I
Sbjct:   28 GTGWYRKYEKEGPEGFRKYKLPTPFDW--------------DSNDPSKRKRVFFDVNVDGESKGRIVVETLDDVLPVTSENFQKL----------AMAPKDAW------------------------LTYKNSGIHRIMKTSALVAGDVEGGSGRASHSAL-GRRYFEHEGFYVPHSEPGIVSMVSNKRDENGSQFYITIEPCPHLDGRCTAFGRVVEGMDLVQELRGTFSRHEIPVSDISFGETGVI 226
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A7S4EDH8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDH8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.490e-41
Identity = 100/250 (40.00%), Postives = 131/250 (52.40%), Query Frame = 1 
Query:  358 RGWYQRYQRMGPDAF-RKARAPNPFDWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDV-EGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAV-SGMYSIRGKPVSQITIEKSGEI 1098
            RGWYQRY   GP+ F R +     FDW A  A              + R R F +V+VDG  AGR+  EL  +LLP TSENF  LC+G     ++     + Q                             +   RVV G G++GG + +  GG RS  AF+    F DE F +PH  PGLLTMA+SG+  NGSQFYVT EPA HLDGR VAFGR+ +G++VVR +   +Y+ RG PV ++ +E  G +
Sbjct:   23 RGWYQRYAARGPEGFLRPSPGGESFDWDAPEA--------------KTRSRCFLEVSVDGQRAGRLVVELLDELLPETSENFRLLCSG-----DAPSGASYAQS----------------------------TFARRVVKGVGLLGGALPDAPGGSRS--AFADRPLFADEGFFVPHAEPGLLTMASSGVDGNGSQFYVTIEPAPHLDGRCVAFGRLVEGLDVVRHLHDSLYTQRGVPVEKVVVEACGVV 223
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A7S3NRJ3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRJ3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 6.710e-40
Identity = 98/250 (39.20%), Postives = 132/250 (52.80%), Query Frame = 1 
Query:  349 STGRGWYQRYQRMGPDAFRKARAPNPFDWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVS-GTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRA-VSGMYSIRGKPVSQITIEKSG 1092
            S G GWY++Y++ GPD+FR+   P PFD+ A  A           GKR      FFD+ V     GR+EFEL  +LLPVT ENF  LC+G         +P   +                          Y+GS   R+++ G  IMGGDV   GG  SHSA+   R++ DE F +PH+  G+L+ AN+G+ TNGSQFY+T +   H+DGR VAFGRV  G +V+   +  +Y  RG P   ITI  +G
Sbjct:   45 SPGHGWYEKYKKFGPDSFRRWERPKPFDFDAADAQVL--------GKRT---YCFFDIGVAESKVGRIEFELLDELLPVTCENFKLLCSGF--------APSGFR--------------------------YKGSHFIRLMARGAAIMGGDVATAGG--SHSAWK-QRYYADEGFFVPHSQAGILSSANAGIDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKDVYMQRGIPTKSITILDAG 246
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BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN)

HSP 1 Score: 152 bits (384), Expect = 7.270e-40
Identity = 91/200 (45.50%), Postives = 115/200 (57.50%), Query Frame = 1 
Query:  505 RAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAI-HRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSG-MYSIRGKPVSQITIEKSGEI 1098
            R FFDVAVDG  AGR+E EL  +LLP T ENF  LC                      G+GA                GY G+ +  RVV G G++GG V+  GG  SHSAF+G R F DE F +PH  PGLL+MAN+G+ TNGSQFY+TT  A H+DGR VAFGRV  G++VV+ ++  +Y+ RG PV  + I   G +
Sbjct:    1 RCFFDVAVDGEAAGRIELELLDELLPETCENFRLLC----------------------GDGAP------------SGFGYAGANLARRVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164
[Close]
BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Match: A0A1Y1W7T4_9FUNG (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W7T4_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 1.330e-35
Identity = 79/198 (39.90%), Postives = 107/198 (54.04%), Query Frame = 1 
Query:  505 RAFFDVAVDGVPAGRVEFELASDLLPVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDEKKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRAVSGMYSIRGKPVSQITIEKSGEI 1098
            + FFDVA +G P GR+E EL +D++P T+ENF  LC G                                    EK  GYEGS  HRV+    + GGD   + G    S +     F DE F + HT PG+L+MAN+G +TNGSQF++TT     LDG+ V FG+VT+GM+VVR V G+ S  G+  +Q+ I KSG++
Sbjct:    5 KVFFDVASNGAPLGRIEMELFADVVPKTAENFRALCTG------------------------------------EKGFGYEGSIFHRVIPQFMLQGGDFTNHNGTGGKSIYGNK--FADENFALKHTGPGVLSMANAGPNTNGSQFFITTVTTSWLDGKHVVFGKVTEGMDVVRKVEGLGSQTGRTSAQVKITKSGQL 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W9_ECTSI5.680e-12872.54Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A836C8D9_9STRA2.110e-6747.57Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
W7TUT6_9STRA8.440e-5441.57Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A4D9CP74_9STRA2.800e-5241.57PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S2BM91_9STRA6.330e-5039.77Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A7S1UAR4_9STRA2.930e-4538.31Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeom... [more]
A0A7S4EDH8_9STRA4.490e-4140.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelago... [more]
A0A7S3NRJ3_9STRA6.710e-4039.20Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureou... [more]
F0Y6J0_AURAN7.270e-4045.50Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A1Y1W7T4_9FUNG1.330e-3539.90Peptidyl-prolyl cis-trans isomerase n=1 Tax=Linder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:160686..168098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G0W9
PFAMsHSP70,Pro_isomerase,TPR_1,TPR_2,TPR_8
Model size1722
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K05864,ko:K20097
KEGG Pathwayko04217,ko04218,map04217,map04218
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.9e-132
EggNOG OGsCOG0652@1|root,KOG0546@2759|Eukaryota
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-23_002000.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size822
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.4909906-UTR-P-littoralis_Contig202:160685..1609641680789991.4909906-UTR-P-littoralis_Contig202:160685..160964Pylaiella littoralis U1_48UTRP-littoralis_Contig202 160686..160964 +
1680789991.54269-UTR-P-littoralis_Contig202:167477..1680981680789991.54269-UTR-P-littoralis_Contig202:167477..168098Pylaiella littoralis U1_48UTRP-littoralis_Contig202 167478..168098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.506769-CDS-P-littoralis_Contig202:160964..1614411680789991.506769-CDS-P-littoralis_Contig202:160964..161441Pylaiella littoralis U1_48CDSP-littoralis_Contig202 160965..161441 +
1680789991.517544-CDS-P-littoralis_Contig202:165802..1659301680789991.517544-CDS-P-littoralis_Contig202:165802..165930Pylaiella littoralis U1_48CDSP-littoralis_Contig202 165803..165930 +
1680789991.5296123-CDS-P-littoralis_Contig202:167260..1674771680789991.5296123-CDS-P-littoralis_Contig202:167260..167477Pylaiella littoralis U1_48CDSP-littoralis_Contig202 167261..167477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.37.1prot_P-littoralis_Contig202.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 160965..167477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.37.1

>prot_P-littoralis_Contig202.37.1 ID=prot_P-littoralis_Contig202.37.1|Name=mRNA_P-littoralis_Contig202.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MQALRTGALAQGSLRAIRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPF
DWGATPALATEGAVGEESGKRRPRRRAFFDVAVDGVPAGRVEFELASDLL
PVTSENFLRLCNGVPVVTNSSCSPQHLQQQAGGGEGAIIEEEEVEEGVDE
KKLGYEGSAIHRVVSGTGIMGGDVEGYGGKRSHSAFSGLRFFPDEAFLIP
HTAPGLLTMANSGLHTNGSQFYVTTEPAGHLDGRSVAFGRVTKGMEVVRA
VSGMYSIRGKPVSQITIEKSGEI*
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mRNA from alignment at P-littoralis_Contig202:160686..168098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.37.1 ID=mRNA_P-littoralis_Contig202.37.1|Name=mRNA_P-littoralis_Contig202.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7413bp|location=Sequence derived from alignment at P-littoralis_Contig202:160686..168098+ (Pylaiella littoralis U1_48)
CGAAATTTTAGATTTTAGATTTGGGCATTCCGCGGGGACAAGAGCCACCC
TCATACCCCATAGAGTATGTATGTCGTAGGTCCCTCGGGGGTTGCGCAGT
TCCAGTAATCTTTTAAACATACCCTTCGGTCGCTTCGGTCTGCATTGCCT
CCCGCCAGCCGCAACTGCTGTGCCGAGGAGCTGGTCAGTGGTGCCGTGTG
CGGTGTGACGGCGTGTGTGTGTTAGCTAGAGTGTTTGTTGTGGCAGGGCA
ACCTTACGGACACCCACGCAGGTTCCAAAATGCAGGCCCTTCGGACGGGA
GCGCTGGCTCAGGGGTCCTTGCGGGCAATTCGAGGAGGGACCCGGGCATC
CACGGGGCGAGGATGGTATCAGCGCTATCAACGCATGGGACCGGATGCCT
TTCGCAAAGCTAGAGCTCCTAACCCTTTCGACTGGGGAGCAACACCAGCA
CTAGCAACAGAAGGAGCAGTAGGAGAGGAGAGCGGCAAGAGAAGACCGCG
CCGGCGAGCGTTCTTCGATGTGGCCGTAGATGGTGTGCCCGCGGGGCGGG
TTGAGTTTGAGCTTGCGAGCGATCTGCTGCCGGTGACAAGCGAGAATTTC
TTGCGGCTGTGCAATGGTGTTCCTGTCGTTACCAACTCGTCTTGTTCACC
GCAGCACCTGCAACAGCAGGCGGGGGGCGGAGAGGGCGCTATTATCGAGG
AGGAGGAAGTTGAGGAGGGAGTGGACGAGAAAAAACTTGGCTACGAGGGA
TCCGCGGTTAGTGGAGTACGTCGCTTCTCTGTTGAAATTGACTTGTGTAA
CAACATGCTGCGGTGTATCACAACACAGCAGCAAGCAGCGTTACACATTA
CACACACATCGTATCCTGGGCGCCGTCTGCCTGCTGTGTCTGCCAGCCTG
TCTGTCTCTCTCCCTCCCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTT
GCTCTCTCTCTCACACTCCCTCTTGGCGATACCGTATCCGTCCACAGCTC
GGAAGTTCCATTTTGATCACGACAGCCTGTATCACATCCCTAGAAGTTTC
AGTCATACATACTTGCACAACCTTGCCCTGGACACCAGGACGATGGGCAT
CCAAAAACAGCAGTAGTAGAAATGTGGCGCAACGGCGGGACAACAAGCTC
GGCGAGAAATTTCCACTTGACCCTCCCTTCATTCATTCTGTTGCATCAGT
CATGCTGCCTGTCGGTATTTAACGCACGCTGCGTGATCTGGCGTCACAGT
AGCGCCGCAGATGTTATATACAGCAGTATATACGGTAGTACTTCAGGTAT
CCCCTCGCCTGTGAGTAATTTTCTTTCAAAACTGTTGAGTTATAGAAACA
CAAGTAGATGTATTACTCACTTTGTTCGTTGCTAATCTTGCTAGATCCTT
GCTAGGGAGAGGCGAACACAATGATGTCTTGGTAAGAAAAAAAAAAAACT
TTAAAACTAGGTGCCTACCGTAAACTACACAAGATAACACACCCACATAA
GATACCACACCCCCCACAGAATACGACACCCCGGTGATAATTTTGGGCGC
ATTTTTGCAACCATCGATTTACCACCGGGGCTACACAAGATACCACACCC
CTGGTGATAATTTTAGTTACGCCGCATACATTCACGGGGCCCCTCCTTTC
TACCACCGGGGTGATAGAACATCTGCCCCGTGGGCACACAACACCACACC
CTGTGTGCGGGGGGAACACCCCGTGTGGAGACCTCCAAGAACATGAACGT
TGAGGGAGAGCAGAATGCCTCTGGTGCCCCCGCTTCTCCGACAACTGCTT
CGACCGCAGCAGTACAGCAGGCGCCACAGATCACGTCGACACGGGCGTGC
TGGTGGTGGACATCAGCGATGACAAGGGCGAGGGGCTGTGAGGCATCGAT
AGCGATGCTGGTGTTGAGAAAAATGATTGGTGTTGTCCTTCTCATGTTTC
CTCGCGTTTCTCTTCTGTCCGTTGTTTTCTTAGCCGCGTACAGTGCAACG
TTGTTGTGTTTCGTGGTCTTGGACTTTTGGTCGTGCTTGTTGCAGCAGCC
TGGTACGTTTTTGAAGAGGGCAAGACAGATGGCGCACTCTGTGGCGCCGT
CTCGCGTCATATCGGGCGAGGTATCATCGATTTAACTTCCACTTTTTGAT
GCTCCATCAAGCCAAGAGAGCTGACATTTTTTTTCGAGCTTTTTCGGCTT
TGAGGGGGGTCAGTCATCGTCGAGGTAATGTGCTCAGGAGTTTTGTCCCC
GCAATAACCTAAGGTGTGTGCGGACGTTCGGACAGGTATCACCCCCCCGC
AATACCACACCGCTTCAAGTGTCCGGCAGCAGCGGCTCAACTCTACAAGG
AAGGAGTGTTTCGGTATCCCCCCCCAAGCACGACCTGTGGGTGTTCGGAG
GTTATCACACCCCCTGGTTTATCACACCCCCAAACACACCCTGTGGGTGT
TCGGACGTGCTATCACACCCCCTGGTTTATCACACCCCCACACTTATCAC
ACCCCCAAACGTACCCTGTGGGTGGTCGGACGTGCTATCACACGCCCTGG
TTTATCACACCCCCTGGGGGCCGCCGCGACCAGCTCTCTATTACCGGGGC
TACACAAGATACCACACCCCCCCACAATACCACACCCGGTGATAATATTT
TCAAGCGCTCAAATGTATCACCGGGGGTGTGTTATCTTGTGTAGTTTACG
GTGTATCTCCGCAGCAACTTTGTGATCGCCTCACAAGCCATGCCCCGGTG
ATACAAAAAATTGGGTTCTAAAAAGCCTGAAAAAAAGTGTCACCCGGAAG
ATTACTTGGTGAATACGGGGTGTGATATCGAAGATCCCAGTATACTGATG
TTCAGCAGTGGGGCGCATTTTATAGCTGAAAAATCGATCCAGAGGGGTAG
TGATATGCCTCGTCACCAGCGGTATCCCCAACCTAAAAAAATACAACCTT
TTTGCTAATCTGTGTAGGTACTACACACGCATCCGCTGAATCCTTCGCTT
TAATTCTGTTCACAGAGACATCATACCCCCACCTCGGCCAACCCTTAGCA
ATCTGTAGACATCAGCATCACATGTACACACAAACAAACTTTCGATTGAC
GGCCTGCAAAAAAATCTCAGTCGGGATACTTTTTTCGTGCGACGTGCGCA
TGTGCTTCATTCAGCACGCTGATAAATAAACCTTGTCACGGCGTGTGCCC
TCGCTGCACCTGGGGCCAACAAGACAGCAAGTCGGTCTTGTCCCTGTTGA
CCCAACGTTTGAATAGCATACGTGTTAGTCTCGTACCGTGAACAACACGG
CTTCATCATTAAGCGTTTAGTTTTTCCAAGTGTCATGTGTTCTGTAAATA
GTTAATATGTCCCACCTCTCTTTTCGCTTCTGTATGACATACTTGTATTA
CAACCAGCACTTGCATACTTACCGGATGGGAGTGGTGTGTACTGGGGAGC
CGTCTGTGCATTTTTGTGTGTTCTTGTTCTTGTTCTTGTTCCTGTTGTTA
TTGTTATTGTTATTGTTCCTGTTCTTATTCCTGTTCTTGTTTCTCGTCGT
CGTTGTTGCTGCTGCTGTTATTGTTGTTGCTGTCGTCGTCGTTGTTGTTG
GATTTTCACATTCACGCATCACCAAGATCTAAAGCCCGTGCTCACAAAAG
TGCCGAACCCTTCACAGGAGGATCTGAAAAAAAACGCAGAGAGTAAAAGT
CACTACGCCCTCTTCTTAAAGTGCTTGTGTGCAATACGCTGAACTAGCGC
TGCGACCGCGCAGATATCGGTTTGACGATAACATCGTGTTCAGTCTACCC
CCGTTTCACATGTATCCACTCGTGGCCGCAGACTACAGCCAGACGACAGC
AGGTGGTGTTTACAGCGCTGTCTACGACGTACAAAAGGCATGAGCGATTG
TGTGTGCATTTGTCTCCCCATCGTTTCTGAACGTTGATGTAGACAGGGTG
GCCCTTGTCAAAGCTGGGCCCATTCAAAAATATAAATAAAACTCAGAATG
CGTCACTGATAGGTCAACAATCCATCCGCCCGCACTACGTTTTGGATTTC
AGTTTCATTGTTCCGAAACGGGAAGGAAAGTAAAAAACACTTTCCTCTCC
GTGAATAGATCAAAAACGCGGCTCAAAACGAATTGACCTAGAATATGAGA
CAGAGAAGTGCTTGTTGTGCATTCCGGGAGCATATGGTGCACACTACATA
TGCTTGCTTAACTGACCACAGCACAGCGTGTAGAACCCGACTGTACACAT
GTGCTAGCTCCGGAGAAAGCTGGTATCACGTAGCATACAGATCACTTTGT
GTGAGCGGATTCCGACCAGAATCCGGAGAGCAGCATTCGAGTGAGCAGAA
GTGTGCAGGAAGTTTGTTGCTCAACTGCTGTTTGCGGAGCTGACACAGCC
GCTACCTCCAAGGAACGGGCAGATGTGCAACACGTACTCTCTCATCTATT
GCCGAGTTTTTCGGTTGTCGATCCCAAAACAAAGAAATACCAACGCGCCT
CAGTCAGGGCGACGTGGGGCACCATCGTGCTCTTCGTTCGAGGCACGATA
GCTCCCGCACGTGTCTTGGAATCGTCACGGCGTGCTCATATCACACCATT
TATCACACCATCTGTCTGTGACTGCTGTTTGTTTTTGTGCCTCCGCTTTT
GATTTTGGACAAACGGAAGCTGCAGCAGATCAGACCCAACACGGAATCCA
AAATCCAAATCCGATTTGGTTCCCGAAATTTTGCGTGGGTCCTCCGAACA
ATTGCATTTTTGGGCGAGTGCGTTCGTTCGTGGCAAATCAGGGGTGGGGA
GAAAGTGTGTCCATCCGATCGAAAAAATATCTACAGTACAGTTGCCGAAG
AAAGCGCAAGACTGCTCTCGATGAATCAATCTTGCTTGGCGTCCTTCAAT
GTAGAGTCTCAAGAAAGTACATTCCTGGCGTCCTTCAATCTAGAGTCTCA
AGAAAGTACATTCCTGACGACGAAATCCCCCCCCCCCACCTCTCCAGATG
CTTACAGTCATATACTTCGTATCATGTTTTTCCTATCAAGAAGCCTCCTG
AAACGCAATCACTTAACAACGCCCCCCCCCCCCCCCCGCCCCTCCCTTCA
AATGCTTACTGCGGTAGATACATCGGGTAGTTTCAGGCACGGGAATCATG
GGCGGCGACGTCGAGGGCTACGGGGGAAAGCGGAGCCACTCGGCGTTCAG
CGGCCTGCGCTTCTTTCCCGACGAGGCGTTTCTCATCCCACACACGTGTG
TATGCACACATCATGTGCACACAAAACTCGAAACAGGGTGCACACAATGA
ACTAAACCATGTACTGCAGCACCTCATCCCACACCACGTGTGTGTGGGCA
CACAAAATCTGAGATGCATGTGTGCTAGCAGTGAACCTGTTACCTTTTGT
CATGGTGCCTTGCACAGTTACACCTTGTGTTAAGGGCCTGCCTTATACGT
GAGTAAATACAAAGAGGGTTTGGGGGATTAAATCATCCATGCAATGGACC
ATGAGTTTGATCCTTGAATGGGGTTTGCTGCTGTTCCCATTCCCATGAAA
ACGATTTTTCCTCGCCACTTTTTGTCGATGTGGTGGGCTGGGTCGTGATG
GCACACCGGACAATATACGCCTTCCATGGACACATTTTTAAGTGATTCGA
TCTGGTGCGGAAGTCTCCCCACACCTGTTATGGCACTTGCGAATGTAGTA
CGGGCGGAGGTGCTGCGTAGAGGTCGCAACGGCCGGCTACTGCTGTAGTG
CTTTTCATGTCATTTTTCATGACAAATAATCACTACAAACATCTGACCCC
CGAAATCAACTGGCTTCCGTCTCGATTTTGAGACGCCCATCTCTCACCGT
CGTGGATTCGTGCTTGTGTGGGTGCCATGATTCTCGTGTCCTTGGTGGTA
TGTATGTATGTGTGTACGTATTTTGTACGTGGGTACGTCCATGTATAACG
TATGTGCGTATGTATCCATCTATTATACTGTGTGTTTACCGTTGTTTTGG
CACACGATGATTCCAACGTAAGGCATTGCTGTAAACGATTTTGCATATCG
AGTGCATGCTTGCGATTGTTTCGGCACACGATGATTCCTACGTAAGACAT
TGCTGTACTCAATTTTGCATATCGACTGCTGTTTGGTGGCGTTCTTTCCT
GGATTATCTGTCCTGGATTAAACAAGAGACATGTTCTTCTTGTCGGCCTT
GCCGGTTACGATGGCAAAAAGATAAAACAATGGGACAATTTTTTTTGTGT
TGCCTCTCAAGGGTGGACACTTTTCCCTCGATTTTTGATGCACATGATAG
CATGCATCACATGGCTTGCACCCGGCAACAGGGGCATACATACCTGGCAT
TGCTGTCCCATTTCACACCTTTTGGACCAACTGCTTTGAAGCTCAACTCA
ATTCAGGCAGTTCGTTCCTTCCTTTCCTTTTTTTTTTGCTCTTCGTGAAA
AGCAGCAAATAACAAATAACGACCGGATCGAAGTGCGCTTTTCATTCGCA
AGTTCCTAAATTCACTCCGTTCCGACCTTTCCTCTCGTTTTTGCTTCGCG
TATCCTAAACGTATTCACACCGCAGGGCGCCTGGCCTCCTGACGATGGCC
AACTCTGGCCTTCACACGAACGGGTCTCAGTTCTACGTCACCACCGAGCC
AGCGGGGCACCTAGACGGCCGATCCGTGGCGTTTGGGCGGGTCACCAAGG
GGATGGAGGTCGTCAGGGCGGTGTCCGGCATGTACAGCATCAGGGGCAAG
CCTGTGTCGCAAATCACGATCGAAAAATCCGGCGAGATTTAAGTGTGCAT
GTTTTGTATTTCAGGTGGAAAATGTGAGGGGTATCGTAGCTGGTGACTCT
GGTCGCCAGGGGGCGAACGAATGTTATGTTTATTTTTTGTTTCAGGGGCG
TGTGGTGGCATGGGCCGGTTGGTTGAGAGCTGATTATCCTTCCGAATGGA
AACCCATGTCTCGAGAGCTGACTGCTGATTACAAGACAGCAGTGACTCAG
CTTTGGCGTATTATGGAGAGAAGCAGTGGCACGCTGGTTTCGGGCACTTG
TCGAAGGCATCGACGTCGTCATCACGGCAGAGGCATCATGACGAGTGACG
ACGCTCCTTTTCCAAGGGTACCGTATTGCCTTTTCGGGCACAGGTCGGGA
AGGCTTGTGGTGTCTGTGTGAGCGTGTCATCTCCCATCTTAGCTCGACCC
CATTCTGCACCTTCGGTAGATTCGGGCGCATCAGCCGGGGCTAGTAACAG
AGTGCGTGGAGATTATTTCAGGCAGGTCTGAAAAGCTCAGACCAAACAGC
AGTGAGTGGGGGCAAAATACACTTATTATTGGGCAAACGCCAAAAATCGG
TATACCGCCATGGTTCCGCGCCACAAAGCGGTACACCGAATTACACCTTA
GCATTTATTTGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:160686..168098+

>mRNA_P-littoralis_Contig202.37.1 ID=mRNA_P-littoralis_Contig202.37.1|Name=mRNA_P-littoralis_Contig202.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig202:160686..168098+ (Pylaiella littoralis U1_48)
ATGCAGGCCCTTCGGACGGGAGCGCTGGCTCAGGGGTCCTTGCGGGCAAT
TCGAGGAGGGACCCGGGCATCCACGGGGCGAGGATGGTATCAGCGCTATC
AACGCATGGGACCGGATGCCTTTCGCAAAGCTAGAGCTCCTAACCCTTTC
GACTGGGGAGCAACACCAGCACTAGCAACAGAAGGAGCAGTAGGAGAGGA
GAGCGGCAAGAGAAGACCGCGCCGGCGAGCGTTCTTCGATGTGGCCGTAG
ATGGTGTGCCCGCGGGGCGGGTTGAGTTTGAGCTTGCGAGCGATCTGCTG
CCGGTGACAAGCGAGAATTTCTTGCGGCTGTGCAATGGTGTTCCTGTCGT
TACCAACTCGTCTTGTTCACCGCAGCACCTGCAACAGCAGGCGGGGGGCG
GAGAGGGCGCTATTATCGAGGAGGAGGAAGTTGAGGAGGGAGTGGACGAG
AAAAAACTTGGCTACGAGGGATCCGCGATACATCGGGTAGTTTCAGGCAC
GGGAATCATGGGCGGCGACGTCGAGGGCTACGGGGGAAAGCGGAGCCACT
CGGCGTTCAGCGGCCTGCGCTTCTTTCCCGACGAGGCGTTTCTCATCCCA
CACACGGCGCCTGGCCTCCTGACGATGGCCAACTCTGGCCTTCACACGAA
CGGGTCTCAGTTCTACGTCACCACCGAGCCAGCGGGGCACCTAGACGGCC
GATCCGTGGCGTTTGGGCGGGTCACCAAGGGGATGGAGGTCGTCAGGGCG
GTGTCCGGCATGTACAGCATCAGGGGCAAGCCTGTGTCGCAAATCACGAT
CGAAAAATCCGGCGAGATTTAA
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