mRNA_P-littoralis_Contig202.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.2.1
Unique NamemRNA_P-littoralis_Contig202.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig202.2.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.930e-24
Identity = 58/165 (35.15%), Postives = 93/165 (56.36%), Query Frame = 3 
Query:  225 RSMELEDTFCRTVPIKVGVLSREELYGRFQRREVDAAYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERVRQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMDERETNTHVIRRLSSLFHTQAEILLANPFA-TRMKIESVVLNKH 716
            R +EL +     +P+    +S EEL        V+    +WNLL+ SV  + ++ ++ A+GSPSGGW  F NYY P+A AEKER+  +++ L   + E P+ +F R  VL S+L  HG++  + + N H++  LS  +  + +IL  +P   +R KIE  V + H
Sbjct:   41 RDVELTE---EKIPVGKEGVSMEELPRVHSSDSVEKTITSWNLLITSVTYMPILTQIIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLSDEYMME-KILTMSPIPRSREKIEKGVRDAH 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE7.930e-2435.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:8335..9050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons1
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.425216-UTR-P-littoralis_Contig202:8334..85161680789990.425216-UTR-P-littoralis_Contig202:8334..8516Pylaiella littoralis U1_48UTRP-littoralis_Contig202 8335..8516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.4380283-CDS-P-littoralis_Contig202:8516..90501680789990.4380283-CDS-P-littoralis_Contig202:8516..9050Pylaiella littoralis U1_48CDSP-littoralis_Contig202 8517..9050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.2.1prot_P-littoralis_Contig202.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 8517..9050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.2.1

>prot_P-littoralis_Contig202.2.1 ID=prot_P-littoralis_Contig202.2.1|Name=mRNA_P-littoralis_Contig202.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MSRQCSWYGLSLLFRSMELEDTFCRTVPIKVGVLSREELYGRFQRREVDA
AYRAWNLLLNSVVDVAMMVRMTAEGSPSGGWSAFKNYYTPQADAEKERVR
QEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMDERETNTHVIRRLSS
LFHTQAEILLANPFATRMKIESVVLNKH
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mRNA from alignment at P-littoralis_Contig202:8335..9050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.2.1 ID=mRNA_P-littoralis_Contig202.2.1|Name=mRNA_P-littoralis_Contig202.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=716bp|location=Sequence derived from alignment at P-littoralis_Contig202:8335..9050+ (Pylaiella littoralis U1_48)
GGAGGACAGAGCCACACACGACATCGAGCGTACGGACGGAACCTCATCTG
CGGGACAGGACACCGTGGTGCAGCAGCTAATCACCGCGCTGGGAAGAATG
GGGACAACGCCCAACCAAGGGTCGACGGTTAACACGTATAGTCAGGGGAG
TAGAGTGGAATTTACTGGAAAGAGGGCGGAAGATGAGCCGACAATGTTCA
TGGTACGGTTTGAGTCTTTTGTTTCGATCTATGGAGTTGGAAGATACTTT
TTGCAGGACAGTACCGATCAAGGTAGGAGTGCTGTCCAGAGAGGAATTGT
ACGGGCGATTTCAGAGACGTGAGGTGGATGCTGCTTACAGGGCTTGGAAT
CTGCTCCTGAACAGTGTGGTAGACGTCGCAATGATGGTTAGGATGACGGC
AGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAAAACTATTACACTC
CACAGGCAGATGCTGAGAAAGAAAGAGTAAGACAAGAATGGTATGATTTG
CGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGGGTAACAGT
GCTGGAAAGCAAACTCTGTAGACATGGGATCGTAATGGATGAGAGAGAAA
CCAACACACATGTAATCCGCCGTTTGTCGTCGTTGTTTCACACGCAAGCC
GAAATTTTGCTCGCCAATCCGTTTGCTACCCGCATGAAAATAGAGAGTGT
GGTGCTCAACAAACAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:8335..9050+

>mRNA_P-littoralis_Contig202.2.1 ID=mRNA_P-littoralis_Contig202.2.1|Name=mRNA_P-littoralis_Contig202.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig202:8335..9050+ (Pylaiella littoralis U1_48)
ATGAGCCGACAATGTTCATGGTACGGTTTGAGTCTTTTGTTTCGATCTAT
GGAGTTGGAAGATACTTTTTGCAGGACAGTACCGATCAAGGTAGGAGTGC
TGTCCAGAGAGGAATTGTACGGGCGATTTCAGAGACGTGAGGTGGATGCT
GCTTACAGGGCTTGGAATCTGCTCCTGAACAGTGTGGTAGACGTCGCAAT
GATGGTTAGGATGACGGCAGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGT
TCAAAAACTATTACACTCCACAGGCAGATGCTGAGAAAGAAAGAGTAAGA
CAAGAATGGTATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTT
TTTCTCCAGGGTAACAGTGCTGGAAAGCAAACTCTGTAGACATGGGATCG
TAATGGATGAGAGAGAAACCAACACACATGTAATCCGCCGTTTGTCGTCG
TTGTTTCACACGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCG
CATGAAAATAGAGAGTGTGGTGCTCAACAAACAT
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