mRNA_P-littoralis_Contig202.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.16.1
Unique NamemRNA_P-littoralis_Contig202.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.010e-21
Identity = 76/180 (42.22%), Postives = 90/180 (50.00%), Query Frame = -1 
Query:    2 MTARPDGAAVEGEEDAIFDEPM--VGEELEGLMG-EPPSVSNESA----------------DFIADTAARLAIESGCVDEAPLVLRGRITRRRNLRPTPVSSPRKVDLQRVLDMETKHDGAPGYLLAKRLRNQSYYFEVRHFNVRRGLP**PL*RCSR-------GRGEDGIPREIGSAV 463
            MTARPDGAA EG ED +FD+P+  VGEELEGL+   PPS S+                   DFI +TAARLA ESGC  EAPLV      + R    T       V  ++VLD +  HDG PGY LAKR+RNQ YY      +            C +       G   DGIP EI  A+
Sbjct:    1 MTARPDGAAEEGGEDTLFDDPVEVVGEELEGLLRLSPPSTSSTPVLAIITQHAIDSPETIRDFIEETAARLAKESGCQHEAPLVT---WKQDREAATTCGRLQAGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFAGEARDGIPSEIVRAM 177
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5L174_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L174_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.600e-11
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = -1 
Query:  269 AVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSN------------ESAD----FIADTAARLAIESGCVDEAPLV 487
            A+ +   SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS+            ES +    FI + A  LAI +GC    PLV
Sbjct:   50 AIESPEXSMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 138
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5KC02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC02_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.630e-11
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = -1 
Query:  269 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSN------------ESAD----FIADTAARLAIESGCVDEAPLV 466
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS+            ES +    FI + A  +AI +GC    PLV
Sbjct:   10 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSVAIGAGCPHSLPLV 91
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5KC65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC65_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.770e-11
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = -1 
Query:  269 SMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSN------------ESAD----FIADTAARLAIESGCVDEAPLV 466
            SMTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPSVS+            ES +    FI + A  LAI +GC    PLV
Sbjct:   53 SMTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDDEELAAVRKHAIESPETVRAFIKERARSLAIGAGCPHSLPLV 134
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5JL74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL74_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.700e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = -1 
Query:  356 MTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPS 463
            MTAR  GAA EGE D IFD+P+VGEE+EGLMG+PPS
Sbjct:    1 MTARSRGAAPEGEPDPIFDDPVVGEEIEGLMGDPPS 36
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BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.130e-7
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = -1 
Query:  344 PLRTNDSAVVAERRSMTARPDGAAVEGEEDAIFDEPMVGEELEGLMGEPPSVSNE 508
            PL    S   A   SMTAR  G+A EGE D IFD+P+VGEE+EGLMG+PPSVS++
Sbjct:  679 PLNRCSSGGAAAPGSMTARSRGSAPEGEPDPIFDDPVVGEEIEGLMGDPPSVSDD 733
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE1.010e-2142.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L174_9PHAE2.600e-1149.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC02_9PHAE4.630e-1151.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC65_9PHAE4.770e-1152.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL74_9PHAE9.700e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8W1_9PHAE1.130e-760.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:66440..68355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size841
Hectar predicted targeting categoryother localisation
Exons4
Cds size459
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.16.1prot_P-littoralis_Contig202.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 66643..68144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.0876117-UTR-P-littoralis_Contig202:66439..666421680789990.0876117-UTR-P-littoralis_Contig202:66439..66642Pylaiella littoralis U1_48UTRP-littoralis_Contig202 66440..66642 -
1680789990.1388118-UTR-P-littoralis_Contig202:68144..682281680789990.1388118-UTR-P-littoralis_Contig202:68144..68228Pylaiella littoralis U1_48UTRP-littoralis_Contig202 68145..68228 -
1680789990.1475837-UTR-P-littoralis_Contig202:68260..683551680789990.1475837-UTR-P-littoralis_Contig202:68260..68355Pylaiella littoralis U1_48UTRP-littoralis_Contig202 68261..68355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.098304-CDS-P-littoralis_Contig202:66642..669431680789990.098304-CDS-P-littoralis_Contig202:66642..66943Pylaiella littoralis U1_48CDSP-littoralis_Contig202 66643..66943 -
1680789990.1119878-CDS-P-littoralis_Contig202:66994..671361680789990.1119878-CDS-P-littoralis_Contig202:66994..67136Pylaiella littoralis U1_48CDSP-littoralis_Contig202 66995..67136 -
1680789990.1287177-CDS-P-littoralis_Contig202:68128..681441680789990.1287177-CDS-P-littoralis_Contig202:68128..68144Pylaiella littoralis U1_48CDSP-littoralis_Contig202 68129..68144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.16.1

>prot_P-littoralis_Contig202.16.1 ID=prot_P-littoralis_Contig202.16.1|Name=mRNA_P-littoralis_Contig202.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=153bp
MSSTRWRSTFRGDETGVGRKFLRRVILPRRTSGASSTQPDSIASRAAVSA
MKSADSLLTLGGSPIKPSSSSPTMGSSKMASSSPSTAAPSGRAVMERRSA
TTAESLVRNGALPRAAAAAAAPLSAVSLRLPLFCGRSFGVRVWTCVPASH
QT*
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mRNA from alignment at P-littoralis_Contig202:66440..68355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.16.1 ID=mRNA_P-littoralis_Contig202.16.1|Name=mRNA_P-littoralis_Contig202.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1916bp|location=Sequence derived from alignment at P-littoralis_Contig202:66440..68355- (Pylaiella littoralis U1_48)
ACACGGCGGAGCCAATCTCGCGGGGGATACCATCCTCCCCCCTCCCCCGC
GAACACCTTCAGAGTGGCTATCATGGAAGCCCCCGCCGGACATTGGTGCC
CCTGCCCGAGGCAGAGCAAGTCTGTAGAAGTGTCGTACTTCGAAGTAGTA
ACTTTGGTTCCTCAACCTTTTCGCAAGGAGGTAACCAGGGGCGCCGTCGT
GTTTGGTTTCCATGTCGAGCACACGCTAAATAATTTAAAGTCAATCAAGA
ACAGGGGAGGGAAGTGGGCGGGGAGATGGAGAGGGGGGAGGGCAGGTGAG
AGCATGCTGAAATAATTTGCCCGTGGTCATGGGTTTCCCGCAGTATACAA
CTTTCGTTTGACCATGTCACAAGAAAGAACGGGCGAGAAAAAAATTACTG
CTAACTTATTAGCAAAAAAGAAAGACACAGCGGGTCGGTTGGTATTCGCC
CGCATTACTCTCCACCCTATCGTTTCGGCCCGCAGACAGTCCCAGCTGTA
CATATCCGGCTGTGCATATCCAGCGATGTCTCAATCTTACCTTGCTACAA
GTACTGCTGCTACTGCTCTCATCAGAGTGCTGACTGGCTTATGGCGATTT
TTGTTGCGGTACGAAAGAAAATAACAACAGCAGCAGCAGCAGTAGCAGCA
CTTTTCATCGAGGTGCTCCTACTGCTGCTGCTGTGGTGGTGTTGGCGTAG
GAAAGCAAAGCTATAAAGCAACAACAGCAGCAGAAATATCACTCTTCTGA
CATGGCGGTGTAGCTGCTGCTATGATGGTCTGTATGCGCACTAATATCAC
AGCAAATAGTACGAACACGAGCGCCAAACAGCAGGACCATCCGACCTTGG
ATGTCGTACAGGTATGCTGTAGTATAGGTATGGGTTGGTTTTGAGGCAAG
CACGTAGTAGGGCTGGCTGATGGGTTCCAGATGCTGGTGTGCTGTGTTAC
ACGACACCCCGGATGATACCATACAGATACAAACTACGGGTAACTATTAT
GCACGTGATTCACTTGTACAAATTAGGGGTAAGTATCATAGGATACGTTT
AGTACAGCGGTCGTGTGAACAGGGCAAGCAAAAATAAACCAGGCAATGAA
TAAAGGAAGAGAGGACTGCAGCAGTACCGAATATAGAATGCGACTTTCTT
TCTTGGACACACGTACCCTACAGCAGGAGGCTGCACAACATGCGATTTAA
TTGCTGTGGTGAATCACCTGGAGGTCAACCTTCCGAGGAGACGAGACTGG
TGTTGGCCGCAAGTTTCTGCGCCGAGTTATCCTTCCACGTAGAACGAGCG
GCGCCTCGTCTACACAACCCGATTCGATCGCAAGCCGAGCAGCTGTATCC
GCGATGAAGTCGCGGATGGTCTCGGGGTGGGTCGTGGCATGCTTCTTGTT
GATGAGAGCCAGTGCGGATTCATTGCTGACACTCGGCGGCTCTCCCATCA
AACCCTCCAGCTCCTCCCCCACCATGGGCTCGTCAAAGATGGCATCCTCC
TCGCCCTCCACTGCAGCACCATCGGGGCGTGCGGTCATGGAGCGCCGCTC
AGCCACCACGGCTGAGTCGTTGGTCCGCAATGGTGCTCTCCCTCGGGCTG
CTGCTGCTGCTGCTGCTCCTCTTTCTGCTGTTTCGTTGCGTCTACCTCTC
TTTTGTGGGAGAAGCTTTGGTGTACGTGTGTGGACTTGCGTGCCCGCTTC
GCATCAAACCTAGTGCTAGACTCCATTTGTTTCACCTCCGCGCTTGTTGC
GTGGCAGTATCACAGCCCTGGTTGCAGTCCCAGCAGCGTCGTGTGGTGGT
ATTGAACCACATGTGCATGAGTGGGGGGGTCCATTTTTATATGCTAACAG
AATCCCCTTATTCGTCCCCCCTACAATAACGCATTTTTTTCAGTTGTCCT
AATGTTACGGTTCAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:66440..68355-

>mRNA_P-littoralis_Contig202.16.1 ID=mRNA_P-littoralis_Contig202.16.1|Name=mRNA_P-littoralis_Contig202.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=459bp|location=Sequence derived from alignment at P-littoralis_Contig202:66440..68355- (Pylaiella littoralis U1_48)
ATGTCGAGCACACGCTGGAGGTCAACCTTCCGAGGAGACGAGACTGGTGT
TGGCCGCAAGTTTCTGCGCCGAGTTATCCTTCCACGTAGAACGAGCGGCG
CCTCGTCTACACAACCCGATTCGATCGCAAGCCGAGCAGCTGTATCCGCG
ATGAAGTCTGCGGATTCATTGCTGACACTCGGCGGCTCTCCCATCAAACC
CTCCAGCTCCTCCCCCACCATGGGCTCGTCAAAGATGGCATCCTCCTCGC
CCTCCACTGCAGCACCATCGGGGCGTGCGGTCATGGAGCGCCGCTCAGCC
ACCACGGCTGAGTCGTTGGTCCGCAATGGTGCTCTCCCTCGGGCTGCTGC
TGCTGCTGCTGCTCCTCTTTCTGCTGTTTCGTTGCGTCTACCTCTCTTTT
GTGGGAGAAGCTTTGGTGTACGTGTGTGGACTTGCGTGCCCGCTTCGCAT
CAAACCTAG
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