mRNA_P-littoralis_Contig202.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig202.12.1
Unique NamemRNA_P-littoralis_Contig202.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig202.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig202contigP-littoralis_Contig202:44063..45985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size366
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.9761474-CDS-P-littoralis_Contig202:44063..443151680789989.9761474-CDS-P-littoralis_Contig202:44063..44315Pylaiella littoralis U1_48CDSP-littoralis_Contig202 44064..44315 -
1680789989.9855025-CDS-P-littoralis_Contig202:45874..459851680789989.9855025-CDS-P-littoralis_Contig202:45874..45985Pylaiella littoralis U1_48CDSP-littoralis_Contig202 45875..45985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig202.12.1prot_P-littoralis_Contig202.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig202 44064..45985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig202.12.1

>prot_P-littoralis_Contig202.12.1 ID=prot_P-littoralis_Contig202.12.1|Name=mRNA_P-littoralis_Contig202.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
GGGGGGGDQGGPGFWPSSRGGRGKTKDKKIKKGDKPQGGFPFPHGNYPHP
GMGGMGPLMKSEPSSPTGGGYGGGYGHGPSHLHPQASPPGSGGPNLLGPR
SRHGGPRKTAPSGGGGGGGGG
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mRNA from alignment at P-littoralis_Contig202:44063..45985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig202.12.1 ID=mRNA_P-littoralis_Contig202.12.1|Name=mRNA_P-littoralis_Contig202.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1923bp|location=Sequence derived from alignment at P-littoralis_Contig202:44063..45985- (Pylaiella littoralis U1_48)
GGAGGCGGTGGAGGAGGGGGGGACCAAGGGGGCCCGGGCTTCTGGCCGTC
CTCAAGGGGTGGAAGGGGGAAGACCAAGGACAAGAAGATCAAGAAGGGAG
ACAAGCCGCAGGTACAGCGGCATATCATACTGTATGATACTTCGCACATT
TTATGACGATCACATGCGACTCTTGAAAAAGTATAGTGTCTTAATGCCGC
ACCGCAGTGTTGGTGTGGCATGTTTGTGTTGTTTGGCGTGGCGTGAGTGT
GCATGATGCGGTGGCGGTTTCGTACAAAAGCCAGAGGTCGCACAGGCTGC
TGGTTTACTCACTGGTCATTTTGCCGTTTCATGTCCGGAGCTTTGGAATT
TTCGACATGTACTTCGACAGTAGTTGCTGTTGTTTTTGCTCTTTTTTTGT
TCGAATTTAACCCGTTTCCGACCAAGCAAGCAGTTTGGGCGCTTTTCCCA
TAATCCCCGTCCGGCCTTTCGCGAAAGCATTCTATTAAAGCCATGCCTCC
TGTGAGTAAACACAATTCGATCGTACCATCGACGAGGGAAAGGAATTGCT
GTCCCCTTTCTCGCGATAAAAGCTCAACCAAACAAGGCAAGCACCGCAGA
GGGAAGTGGAGAAAAAAAAAAACTTCTGTGTTGACTTCCCCATGTGTGAC
CCCAGTTGGAGCGTCGACCTTCCCGAAAGGTGTAGAGTGGCGTCCAATTA
AAGGGACGACAACACACACACACTCCTGTTTGTGTTTTCGGTAGCAAGCC
ACCTATTCATCCGTACCGCCTGTTTTTGTACCCACGGCTGGCCAGCAACC
TAACCAACCATTCTACTGTACTGTCGTACCTTTTTTTGTTCCCACGGCTG
GCCAAAAAGCTGTCAAACCTTATATTGACCTCTTTTGGCCCTTTCCACGA
GCAAGGCAACAAACTCACGTCCTCATTTTTCGTCCCCACGGCTAGCCGGC
AAGCCAACCATACTCAAGCTTGATATTTTGGTCTGTCTCCGCCAGCGAGC
CATCTCTCGCCCGTTTCATTTTGTCTCCACGGCTTGCCAGCAGGCCAACG
AAACGCGGCTACCTTTTTCAGCCCTTTCGACTAGCACACCACCTAATCTA
TGATAGGCCGCCTTTTTTCGTCTCTCATGCTTACCGGCGAGCCAACTTGC
CCGTTCCACCTGTATTATTTTGTACTTACAGCTCGCCAGCAAGCCACCTG
CTGTGCAGTTTCTGCGATTTGCAAGTTGTCTCGCGTGGTTTGCGCAAATC
GTTCGGTATCTTGTGTGGTTCCTCCGTGAGGAGTTCCGAGGATGACATCG
ACGAGTAGGCGGTGCTTGGCGACCTAACGTCAAGAAAAACGGGGTCTCGT
GCACGGATGCGCTAAACGTTCTACCTTTCTTGACCCTTTCGGCCAGCAAG
CCATCCAGCATACTACCTGCAACCTTTTTTTGTCCCTTTCTTTTTTATGC
CTTTTTTGTCCCTTTCTTTTTTATGCCTTTTTTGTCCCCTCGGCTGTCCA
AGGAGCCAACTATGTCATGCTCATGGCCACCTTCTTTTTTTTTCACCCTT
TTTTCACCCTTTTTTGCCGGCAAAACCAAATCAACCCATGCCACCGTTTC
CCCCCCCCCCCCTCTTCTTGCTCGACCGTTTTGGGTACAAATATGCACAT
GATATACATCGACAAACCAGGGCGGGTTTCCATTCCCTCACGGGAACTAC
CCGCACCCGGGGATGGGAGGCATGGGTCCCCTGATGAAGAGCGAGCCGTC
CTCTCCCACCGGAGGCGGGTACGGCGGAGGTTACGGCCACGGCCCGTCGC
ACCTACACCCTCAGGCATCCCCACCCGGCTCCGGAGGTCCGAACCTCCTC
GGCCCGCGGAGCAGGCACGGCGGGCCCCGAAAGACGGCCCCCAGCGGTGG
CGGCGGCGGTGGAGGAGGGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig202:44063..45985-

>mRNA_P-littoralis_Contig202.12.1 ID=mRNA_P-littoralis_Contig202.12.1|Name=mRNA_P-littoralis_Contig202.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig202:44063..45985- (Pylaiella littoralis U1_48)
GGAGGCGGTGGAGGAGGGGGGGACCAAGGGGGCCCGGGCTTCTGGCCGTC
CTCAAGGGGTGGAAGGGGGAAGACCAAGGACAAGAAGATCAAGAAGGGAG
ACAAGCCGCAGGGCGGGTTTCCATTCCCTCACGGGAACTACCCGCACCCG
GGGATGGGAGGCATGGGTCCCCTGATGAAGAGCGAGCCGTCCTCTCCCAC
CGGAGGCGGGTACGGCGGAGGTTACGGCCACGGCCCGTCGCACCTACACC
CTCAGGCATCCCCACCCGGCTCCGGAGGTCCGAACCTCCTCGGCCCGCGG
AGCAGGCACGGCGGGCCCCGAAAGACGGCCCCCAGCGGTGGCGGCGGCGG
TGGAGGAGGGGGA
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