mRNA_P-littoralis_Contig201.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.96.1
Unique NamemRNA_P-littoralis_Contig201.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI)

HSP 1 Score: 494 bits (1271), Expect = 6.210e-170
Identity = 282/368 (76.63%), Postives = 304/368 (82.61%), Query Frame = 1 
Query:  118 MEFNSSTHRRHWLFTKETLREVQEETRQLAAEVCAAGIPPEGSRSFAATRLMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDXXXXXXXXXXXXXXXXXX--------AEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFNVAAMLSEEFGNRKGWKEVLREADELVNELDKVLPYRVEKDKLIAVNKKLKKHALWSEKRSRGAEG 1197
            MEFNSSTHRRHWLFTK TLREVQEET +LAAE CAAG PPEGSRSFA TR   GDK+   A    E     VK E     G   TD    XXXXXXXXXX            AEP+LTVEEECLVK+YYAKKIQETCGRDSADEDLRRSDKVQATA+A+F RFYLSNSVLEHDPKILILTCVFLASKTEEQ+TNV+LLAKATG DDLQILGKEL LLQ GLSF LAVFHPYRALPALVEGARL+AK  G+PPQPERIMALHD ARAALDDI+VT LPFLH PSRLALAALLRE+RRMEAPPF++ A+L +EFG+R+GWK+VLREA  L  ELD++LPYRVEKDKLIAVNKKLKKHA WS+KR R AEG
Sbjct:    1 MEFNSSTHRRHWLFTKGTLREVQEETAKLAAEACAAGTPPEGSRSFAVTRSTAGDKSGGRATTDNEEGTLDVKGE----GGVPATDTGEGXXXXXXXXXXSGKKRPAPTASSAEPLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQATAIAYFHRFYLSNSVLEHDPKILILTCVFLASKTEEQMTNVNLLAKATGLDDLQILGKELTLLQ-GLSFHLAVFHPYRALPALVEGARLKAKTEGIPPQPERIMALHDGARAALDDIVVTDLPFLHPPSRLALAALLRESRRMEAPPFDLPALLGKEFGDREGWKDVLREAQRLALELDEILPYRVEKDKLIAVNKKLKKHAWWSQKRGR-AEG 362
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A7S3XH57_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XH57_HETAK)

HSP 1 Score: 135 bits (340), Expect = 3.880e-34
Identity = 69/123 (56.10%), Postives = 97/123 (78.86%), Query Frame = 1 
Query:  442 LTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVE 810
            LTVEEE ++K YY+  IQ  CGR++ +  LRRS KVQATA+ FF+RFYL+NS++ +DPKI++LTCV+LASK EE+I NV+ LA+ATG+ + ++L  E+ +LQ GL F+L  +HPYRAL A ++
Sbjct:   16 LTVEEESMLKIYYSGMIQALCGRNTDELKLRRSSKVQATAIVFFKRFYLANSIMAYDPKIIMLTCVYLASKIEEEIINVADLAQATGQQEDKVLRAEMPVLQ-GLRFELRCYHPYRALRAFLD 137
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A5D6XV12_9STRA (CYCLIN domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV12_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.550e-28
Identity = 75/195 (38.46%), Postives = 115/195 (58.97%), Query Frame = 1 
Query:  436 PVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFNVAAMLS 1020
            P+L+ E+E +V+ +YA  +QE+C      +  R SDKV+  A+  F+RFYLSNSV+E  PK L+ T +++A K EEQ  +V  +A     D   ++  E++LL+ G+ FQL ++HP+RAL   V+  R  AKAAG     + +  LH  A   ++++L+T +P  H P+ LALAAL      +   P   AA +S
Sbjct:  104 PLLSSEQELVVRDFYAATLQESCS-----QLFRTSDKVKCCALLLFKRFYLSNSVMEFHPKFLVPTAIYVAGKVEEQYISVDTVAAQLKVDHKHVIAHEMVLLE-GVRFQLIMYHPFRALLGFVDDFRGFAKAAGAELPVDTLQKLHANATVVVNELLLTDVPLTHYPAYLALAALAHVVEELGREPTTAAAAVS 292
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A836C6K6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6K6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.420e-28
Identity = 111/374 (29.68%), Postives = 151/374 (40.37%), Query Frame = 1 
Query:  115 IMEFNSSTHRRHWLFTKETLREVQEETRQLAAEVCAAGIPPEGSRSFAATRLMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDXXXXXXXXXXXXXXXXXXAEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSD----------------KVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGA----------------------------RLRAKAAGVPPQPERIMA--------------------LHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFNVAAMLSEEFGNRKG 1044
            +  F SSTHR HW+FT+++L  V  E             PP   R+FA        +   +              + +    ES                     A  ++ V E  L            CGRD+ +E LRRS+                +VQA A A FQRF+LSNS++E DPK+++L  +FL SK E+QI  +  L +AT   +  +L +E+ LL  G  FQL ++ PY  L  LV+ A                             L    A +  +P    A                    LHDAARA LD +L T LP LH+P+RLALAALL  A     PPF+  A L   F  + G
Sbjct:    1 MSSFGSSTHRAHWMFTRDSLTAVLREANAKGRASVLVQKPPAVPRAFACVHSRYFPEGTGEVDTSAHSAFLDETTDVLTADEESALKAWHLALIFQASHFQAGARAGALIQVAELFLGPM---------CGRDAENERLRRSECMXXXXXXXXXXXXXERVQAGARALFQRFFLSNSIMEFDPKLVMLAAIFLVSKIEDQIIPIEELERATNTPEFDMLAQEVPLLA-GTRFQLRIYTPYPPLLGLVDQADKYITETTGGCITLLXXXXXXXLRTAHGALDGALANLNAEPRAARASAHSAARNCISASGAGVLSKLHDAARATLDGVLATDLPLLHAPARLALAALLSAAAEAAPPPFDGDAFLHARFAAQPG 364
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A7S4ARS1_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ARS1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.160e-27
Identity = 88/271 (32.47%), Postives = 143/271 (52.77%), Query Frame = 1 
Query:  442 LTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELI----LLQQGLSFQLAVFHPYRALPALVEGARLRAKA------------AGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALL----REARRMEAPPFNVAAMLSEEFGN------RKGWKEVLREADELVNELDKVLPYRVEKDKLIAVNKKLKKHALWSEK 1176
            LT+EEE L+ S+YA K+    G  +    LRR  KV ATA    +RFYLSNSV+ HDPK ++++  FLASK E+ +T+V  L + T   +  +   E++     L  G++F+L  FHPY+A+ A+ E  R   K+               P   + +  +HD A++ ++D++V+ +P L++P ++ LAAL+    ++  +   P  ++   LS  F +      R   KE+  +  EL         Y+V+  KL  ++KKLKK  +W  K
Sbjct:   78 LTLEEENLLVSFYASKLPSLIGPLAQLPRLRRESKVPATAATLLRRFYLSNSVMIHDPKTIMVSAAFLASKVEDAMTDVRYLEEGTNLMNSPVTLSEILPAETKLLSGINFELLCFHPYKAVLAITEDLRTYLKSEKGRSLVKFLNGTDRPIIGQDLKPMHDDAQSIVNDVIVSDIPLLYTPGQIGLAALIVANEKQRGKDNVPQIDLMGYLSHRFEDADIARMRSLLKEIGTKLQELKEGQHGCANYKVDMQKLKGIHKKLKKCRVWGVK 348
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A2P6R732_ROSCH (Putative cyclin n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6R732_ROSCH)

HSP 1 Score: 118 bits (295), Expect = 8.180e-26
Identity = 107/357 (29.97%), Postives = 163/357 (45.66%), Query Frame = 1 
Query:  115 IMEFNSSTHRRHWLFTKETLREVQEETRQLAAE------VCAAGIPPEGSRSFAATRLMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDXXXXXXXXXXXXXXXXXXAEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPP-QPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFN--VAAMLSEEFGNRKGWKEVLREADELVNELDK-VLPYRVEKDK-LIAVNKKLK 1152
            + +F +STHR  W+FT E L E  +   Q A E      V  A +  +GS ++         K NAD   + +                                          +T+EEE L++ +Y  K+QE C       +     KVQATA+ +F+RFYL  SV++H+PK +ILTC++ A K EE   +   L K   +D   IL  ELI+  Q L F L V+ PYR++   +       ++ G+   Q   +  L D A+  +D I++T  P L  P +LALAAL    +  +   F+  + +MLS     RK     + E  E +N +D  V  Y+   DK ++ +N+KLK
Sbjct:    1 MADFQTSTHRSKWIFTPEQLAEKYKAANQQAIETLEKYGVALAKVNDDGSLTYPEIA-----KENADKHSRPK-----------------------------------------AVTIEEEQLMRVFYETKLQEVCN------NFHFPHKVQATALIYFKRFYLRWSVMQHEPKNIILTCIYAACKIEESHVSAEELGKGISQDHQMILNNELIV-YQSLEFDLIVYAPYRSVQGFIHDME---ESCGLEDDQLPMLQTLRDTAKMDVDKIMLTDAPLLFPPGQLALAALRSANQVHKVVDFDRYLESMLS-----RKSSAHTISELVESLNAIDSWVRRYKFPSDKEILHINRKLK 296
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A022RQJ1_ERYGU (CYCLIN domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RQJ1_ERYGU)

HSP 1 Score: 117 bits (294), Expect = 1.040e-25
Identity = 96/306 (31.37%), Postives = 143/306 (46.73%), Query Frame = 1 
Query:  115 IMEFNSSTHRRHWLFTKETLREVQEETRQLAAEVCAAGIPPEGSRSFAATRLMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDXXXXXXXXXXXXXXXXXXAEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGAR--LRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFN--VAAMLS 1020
            + +F +STHR  W+FT   L+E  ++  + A +             + ATR+ V    + D  F               +  E   D                      L  EEE +++++Y  KIQ+ C      +  +   K+QATA+ +F+RFYL  SV+EH PKI++LTC++ A K EE   +   L K   +D   IL  E+++LQ  L F L V+ PYRAL   +        AK AG   Q E I  LH++A+  +D I++T  P L  P +LALAAL R     +   F   + +MLS
Sbjct:    1 MADFTTSTHRSKWIFTPHDLKEKYKDANKRAKQAL---------EMYGATRMEV----DIDGSF---------------IYAEPQNDVKDNAEKHSRPK---------ALKTEEEQILRAFYEFKIQDVC------DAFKFPRKIQATALIYFKRFYLQWSVMEHHPKIIMLTCIYAACKAEENHVSAEELGKGIEQDHQVILNNEMLVLQS-LGFDLIVYAPYRALQGFIGDMEEIYGAKMAG---QTEIIKNLHESAKLEVDKIMLTEAPLLFPPGQLALAALRRSCEVHKVNDFERYIKSMLS 259
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A5P1EUK2_ASPOF (CYCLIN domain-containing protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EUK2_ASPOF)

HSP 1 Score: 117 bits (293), Expect = 1.940e-25
Identity = 93/304 (30.59%), Postives = 145/304 (47.70%), Query Frame = 1 
Query:  115 IMEFNSSTHRRHWLFTKETLREVQEETRQLAAEVCAAGIPPEGSRSFAATRLMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDXXXXXXXXXXXXXXXXXXAEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFN--VAAMLS 1020
            + +F +STHR  W+FT + L E +E   Q A ++            + +TR+              E+D+    +   P+ G +                         L  EEE  ++ +Y +KIQE CG        R   K+QATA+ +F+RFYL  SV+EH PK ++LTC++ + K EE   +   L K    D   IL  E+I+LQ  L F L V+ PYR++   VE  +   +A     + E++  L +AA++ +D +++T  P L  P +LALAAL R    + A  F   + +MLS
Sbjct:    1 MADFQTSTHRAKWIFTPQELMEKREAANQRAIKLL---------EQYGSTRV--------------EVDVDGSLSYPKPLQGNAERHSLPKP-----------------LNCEEEQFMRVFYEQKIQEVCGA------FRFPHKIQATAIIYFKRFYLQCSVMEHQPKHIMLTCIYSSCKVEENHVSAEELGKGXXXDHQIILNNEMIVLQN-LGFDLIVYAPYRSIEGFVEDMQEFCQARDN--EQEKLKELQEAAKSEVDRMMLTDAPLLFPPGQLALAALHRSNEVLGALNFERYLESMLS 255
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BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: D8SKW4_SELML (Uncharacterized protein CYCH-2 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKW4_SELML)

HSP 1 Score: 116 bits (291), Expect = 2.970e-25
Identity = 75/174 (43.10%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:  442 LTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAAL 963
            L +EEE  ++ YY  KIQ+ CG  S        +K+QATAV +F+RFYLS SV+EHDPK ++LTC++++ K EE   +   L K   +D   IL  EL LLQ GL+F L V+ PYR+L   V   +  A AA      ++I+ L   A   +D +L+T  P L  P +LALAAL
Sbjct:   68 LKIEEELFIRRYYEHKIQQVCGAFSFP------NKIQATAVLYFKRFYLSWSVMEHDPKHIMLTCIYISCKVEEFHVSAEELGKGIQQDHQVILKNELTLLQ-GLNFDLIVYAPYRSLDGFVLDIQKWADAAKDENVSQKILDLQSEAIRKVDAMLLTDCPLLFPPGQLALAAL 234
[Close]
BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Match: A0A7I4DS88_PHYPA (CYCLIN domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DS88_PHYPA)

HSP 1 Score: 112 bits (280), Expect = 2.070e-24
Identity = 71/177 (40.11%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  442 LTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVAFFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQILGKELILLQQGLSFQLAVFHPYRALPALV---EGARLRAKAAGVPPQPERIMALHDAARAALDDILVTTLPFLHSPSRLALAAL 963
            L+VEEE LV+ +Y  KIQ+ C         R   K+QATA+ +F+RFY   SV+EHDPK ++LTC++LA K EE   +   L K   +D   +L  E+I+LQ GL F+L V+ PYR++   +   E    R  +AG+    E +  L   A   +D++++T  P L+ P +LALAAL
Sbjct:   72 LSVEEELLVRRFYENKIQQVCAA------FRLPYKIQATAIMYFKRFYQQWSVMEHDPKNIMLTCIYLACKVEESHVSAEELGKGIQQDPQVVLKNEMIVLQ-GLEFELIVYTPYRSMEGFIYDMEPFVQRMGSAGL----EALQELRAVAGRVVDNMMLTDAPLLYPPGQLALAAL 237
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRJ6_ECTSI6.210e-17076.63Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A7S3XH57_HETAK3.880e-3456.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6XV12_9STRA1.550e-2838.46CYCLIN domain-containing protein n=1 Tax=Pythium b... [more]
A0A836C6K6_9STRA2.420e-2829.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4ARS1_9STRA2.160e-2732.47Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A2P6R732_ROSCH8.180e-2629.97Putative cyclin n=3 Tax=Rosoideae TaxID=171638 Rep... [more]
A0A022RQJ1_ERYGU1.040e-2531.37CYCLIN domain-containing protein n=2 Tax=Erythrant... [more]
A0A5P1EUK2_ASPOF1.940e-2530.59CYCLIN domain-containing protein n=3 Tax=Asparagus... [more]
D8SKW4_SELML2.970e-2543.10Uncharacterized protein CYCH-2 n=4 Tax=Selaginella... [more]
A0A7I4DS88_PHYPA2.070e-2440.11CYCLIN domain-containing protein n=1 Tax=Physcomit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:342923..348924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA16120
Preferred nameCCNH
PFAMsCyclin_C_2,Cyclin_N
Model size1573
Max annot lvl2759|Eukaryota
KEGG koko:K02725,ko:K06634
KEGG Pathwayko03022,ko03050,ko03420,ko04110,map03022,map03050,map03420,map04110
KEGG ModuleM00290,M00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000307,GO:0000428,GO:0001101,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006294,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009414,GO:0009415,GO:0009416,GO:0009452,GO:0009628,GO:0009637,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010118,GO:0010119,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016538,GO:0016591,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019887,GO:0019907,GO:0019908,GO:0019914,GO:0022607,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070816,GO:0070985,GO:0071704,GO:0071824,GO:0071840,GO:0071900,GO:0071902,GO:0072593,GO:0080090,GO:0080134,GO:0090304,GO:0090575,GO:0097472,GO:0097659,GO:0098772,GO:0140096,GO:0150005,GO:1901360,GO:1901362,GO:1901407,GO:1901409,GO:1901564,GO:1901576,GO:1901700,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990069,GO:1990234,GO:2000070,GO:2000112,GO:2001141
Exons11
Evalue8.84e-30
EggNOG OGsCOG5333@1|root,KOG2496@2759|Eukaryota
EC3.4.25.1
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
Cds size1140
COG categoryDKL
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03051,ko03400,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.96.1prot_P-littoralis_Contig201.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 343040..348608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.4203262-UTR-P-littoralis_Contig201:342922..3430391680789989.4203262-UTR-P-littoralis_Contig201:342922..343039Pylaiella littoralis U1_48UTRP-littoralis_Contig201 342923..343039 +
1680789989.5589485-UTR-P-littoralis_Contig201:348608..3489241680789989.5589485-UTR-P-littoralis_Contig201:348608..348924Pylaiella littoralis U1_48UTRP-littoralis_Contig201 348609..348924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.4353871-CDS-P-littoralis_Contig201:343039..3430971680789989.4353871-CDS-P-littoralis_Contig201:343039..343097Pylaiella littoralis U1_48CDSP-littoralis_Contig201 343040..343097 +
1680789989.445743-CDS-P-littoralis_Contig201:343539..3436041680789989.445743-CDS-P-littoralis_Contig201:343539..343604Pylaiella littoralis U1_48CDSP-littoralis_Contig201 343540..343604 +
1680789989.4545772-CDS-P-littoralis_Contig201:343842..3439481680789989.4545772-CDS-P-littoralis_Contig201:343842..343948Pylaiella littoralis U1_48CDSP-littoralis_Contig201 343843..343948 +
1680789989.466517-CDS-P-littoralis_Contig201:344852..3449531680789989.466517-CDS-P-littoralis_Contig201:344852..344953Pylaiella littoralis U1_48CDSP-littoralis_Contig201 344853..344953 +
1680789989.4819312-CDS-P-littoralis_Contig201:345421..3455261680789989.4819312-CDS-P-littoralis_Contig201:345421..345526Pylaiella littoralis U1_48CDSP-littoralis_Contig201 345422..345526 +
1680789989.4912238-CDS-P-littoralis_Contig201:345963..3460371680789989.4912238-CDS-P-littoralis_Contig201:345963..346037Pylaiella littoralis U1_48CDSP-littoralis_Contig201 345964..346037 +
1680789989.504038-CDS-P-littoralis_Contig201:346441..3465621680789989.504038-CDS-P-littoralis_Contig201:346441..346562Pylaiella littoralis U1_48CDSP-littoralis_Contig201 346442..346562 +
1680789989.5128622-CDS-P-littoralis_Contig201:346938..3471001680789989.5128622-CDS-P-littoralis_Contig201:346938..347100Pylaiella littoralis U1_48CDSP-littoralis_Contig201 346939..347100 +
1680789989.5238228-CDS-P-littoralis_Contig201:347643..3477071680789989.5238228-CDS-P-littoralis_Contig201:347643..347707Pylaiella littoralis U1_48CDSP-littoralis_Contig201 347644..347707 +
1680789989.535773-CDS-P-littoralis_Contig201:348105..3482331680789989.535773-CDS-P-littoralis_Contig201:348105..348233Pylaiella littoralis U1_48CDSP-littoralis_Contig201 348106..348233 +
1680789989.5472007-CDS-P-littoralis_Contig201:348452..3486081680789989.5472007-CDS-P-littoralis_Contig201:348452..348608Pylaiella littoralis U1_48CDSP-littoralis_Contig201 348453..348608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.96.1

>prot_P-littoralis_Contig201.96.1 ID=prot_P-littoralis_Contig201.96.1|Name=mRNA_P-littoralis_Contig201.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=380bp
MEFNSSTHRRHWLFTKETLREVQEETRQLAAEVCAAGIPPEGSRSFAATR
LMVGDKANADAKFKTELDIAKVKAEEVPVAGESTTDNTTGGGGGKKRPAP
NAAAAEPVLTVEEECLVKSYYAKKIQETCGRDSADEDLRRSDKVQATAVA
FFQRFYLSNSVLEHDPKILILTCVFLASKTEEQITNVSLLAKATGRDDLQ
ILGKELILLQQGLSFQLAVFHPYRALPALVEGARLRAKAAGVPPQPERIM
ALHDAARAALDDILVTTLPFLHSPSRLALAALLREARRMEAPPFNVAAML
SEEFGNRKGWKEVLREADELVNELDKVLPYRVEKDKLIAVNKKLKKHALW
SEKRSRGAEGGGGGSSSERRKSKKTKTKA*
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mRNA from alignment at P-littoralis_Contig201:342923..348924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.96.1 ID=mRNA_P-littoralis_Contig201.96.1|Name=mRNA_P-littoralis_Contig201.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6002bp|location=Sequence derived from alignment at P-littoralis_Contig201:342923..348924+ (Pylaiella littoralis U1_48)
CCTCGGCATTACAACAGATAACACACAGCAGTACAGTGGCAGCCGTTGCG
TAGAACACAATAGACACGGAGCGGAGGAGAGCTGTACTTGGCGGTTTGGT
TCTCGAGGGTTTAGATCATGGAATTTAACTCGTCTACCCATCGAAGGCAC
TGGTTATTCACCAAGGAAACACTCCGTGAGTCCGTCCTTCCCACTTCCCA
GGGAACATTCCAGTTGTGACTGTTGCCTCTACTTGTGCTTAGAGTATGTT
CCCGCTGTACCACTGTACTGCTGCACTCCGTACTGCTGTACTGCTGTATC
ATACCGAGCTGATAATATCATACAAACGATAAATCGGCAGCGGCACTTGA
ATCTTCCCACAGAAATTTACCACCAGCAACCAGGGGCAACCAAACGAGAC
ATGTTGACGACCCAACGACATCAATTGCTGGTTGGTTACAGCACATGTGT
AGTGGGCTGGCCGTGACGCCGAAACGCCGACGGTATCATGTGTGCAACTG
CTGCACAAATGCATTGCCTTCATGTGATGCTGCGGGATCGCGATTGACAC
ATGGTGCGTCTCCTGCACGCTCGTGTGCTGTATACCTGTATACCCGGGTC
TTGGAACACATGCTCAGGAGAGGTGCAAGAGGAGACTCGGCAGCTCGCCG
CCGAGGTCTGCGCCGCTGGAATCCCTCCCGAGGTGCGGTAAAGGTGTGTG
AGGGCGGCTCGTCTGACCCTCCCCATACTGTAAGATAAAATACTTCGAAG
TACGACTCTGTTTCCGGAGCCTGCATGACATACAGCAGTAGATGCTCGCT
TCAACTGCTGTACTGCTGTATCGATCGTGTCAAAGTATCAAAGGCGTCAA
AGGCATCAACCGAGGATGGGTACAGCAGTACTTCCCGACCCGAACCCTTC
CTTTCGCCTGTGCGCTGCAGGGATCTCGGAGCTTCGCGGCGACGAGGTTG
ATGGTCGGTGACAAGGCCAATGCCGACGCTAAATTTAAAACGGAGCTCGA
CATCGCAAAAGTCAAGGCTGAGGAAGGTTAGAGCTGGTATACAAGTCCTG
GGTGTTTGTTCTGACACCGCCGCGAGCTTACAGCCCTGCTCCTGGTCAAT
CCCACTAGTATGTTTGGCATTATGTACAACAGTTTAGAACCAGGCATCGG
TTTCAACGATGTACGCCGCGAACGATTTCCCCACGGGTAAGCCAAGGCTC
GACGAACAACCGGTTGTTGAAAGGCACGGATTTCGAATAGCAGCGAAGGG
GCCCTGACAATCACAAGCGGAGTACCTCACACGAGCCAGCAGGGAGGTTT
CGGGAAAGAGAAAACTGTTGGTTATCGCACCCACCGGCCGCAGGCTTCTT
TTTACATTCATAACGCACGTCTACCCCCAACTCCTTCATATATCTCAAGA
TAATTTCGTCAACGACTCTAAAATCAAGTTCAAACAGTTTTTTTGGCTTA
AACCTCTCACTGGTAGGTCTGTGGTGCGGGGAGTACAAATTGATGTGGTG
AGACCAGTAGAGCACACTACTGGCCAGCTACGTGTGCGTCGGCACGTTCA
GGCATGATGCTGAGGCCGAGATATCAAAGGCTGCAGCAGCAGCTCAATAA
CGCCCAAAACTGCGGCCGAACTTGACCGACACCAAAGCCTCGTGACTGCT
GTACTCGCCGCCACAGACCCCAACCTCCTGACGGTTCTACAGCAGTAGCT
GGTGGATCTTGCCTGAGCGTGCCGACACACTTGCAGTAGAGGACATTGAT
TTGCACTCCCCGCACCACACACCTAGTGAGAGCGCAAGCCAAATAAGTTG
CTTTTTAACTTGATGAAAGACTGAAATTTGTCCTTTTGATCCAAAATAAG
ATTTTTCCCTATGGAGTTTTTGGCCGCCCTTGTCCGTTCCCCCTCAAGGT
CATCTATCTCACTCTCCTGTACAACCCAAGTGCCGGTCGCAGGAGAGTCA
ACGACGGACAACACCACAGGCGGTGGCGGGGGTAAGAAGCGACCGGCGCC
GAACGCCGCCGCAGCAGAACCCGTCCTGACGGTGAGTAAGTCTCGGCAAA
TGGCGGCTGTTTGTTGTCGTCGCCTGTGGTGCTACCTGTCTGTGGCGCTA
CTACCATGAAGCACCGCTGCAGAGGTACTGCGGTTCCCCGAGTGTCCTGC
CGTTCCTCTAGGGCCGTCGACCAGGATGATTCTTGATTCAAGGTTTTTCG
TCACTCGCTTTTGTATGCAGATTCGGTGATGATGTTATGTTTACAACGAA
CAGGAGCGCACATCTTTCTCATTTGTTTGGTGACTATGGTTCACGAAAGT
TCTCCATGGCTTTTTGTCAACAACGCCTTCCAAGAAGAGGCGTTCTTGCT
CCATCTGTGTGGTTCCTGCCTTTGAGTTTCTAGCCCTGGCCGACATGCCT
TGATTTTCGTATGCACCGTACATGGCCGTACATGCGTGTACTGCTTTGAC
GTTTCGTTGGCATTTCAATGTTGCTCGGGGTGATTCACTCTTGCTCTAGG
TGGAGGAGGAATGCTTGGTGAAGAGCTACTACGCCAAGAAGATCCAAGAG
ACGTGCGGCCGCGACTCCGCGGATGAGGATCTACGGAGATCCGACAAGGT
CCAGGTAAGATATTTCATGGGAGCGAAGATGGCGTCTGGCCGTTTTTTTT
CTGTTCTCACTAGGATTACAAGGTAGCACATCAGTTACGGTTGCTTCGGC
CTGTCGTGCGTGCCGACTGATGTCGGAAACATTCAATTCCCCGACGAGGT
GAAGCGCCGCAATATCGTTGCAGTAGACTGTTTCGGGTAAACCATTCACT
ACTCTCTCTGCGCATCAGCCAAAGAGAAGGTTGTGCGGTAGCTGTAACTA
GGGTACCTGTGCTTTATACGTGAAGCATTTTTGAGGTTTCGGCATGACAT
CCGCCGTCGAGCGGATTTCATTTTGATATCCTTGTAGAACTACAGGCAAA
AAGGCGGGAGCATATTCTGACGCCCCCTCTCCCACCCACCGGTCACTGGT
CGGGGCCTCTGTTTGATCCCATTCGACGTCCTCCCCTACAGGCGACCGCT
GTTGCTTTCTTTCAGCGCTTCTATCTGTCCAATAGCGTCCTGGAACATGA
CCCGAAAATTCTCATGTGAGCCAGCTACACGAAGGTGCCAATTACGCCGA
CCTTTCACGCGGAACATGCCACTAGTACAGTATTTGAAGTACATGTGAAT
CTGCTTTCTCTCCTGTGCGGTCGAGAGGGTAGCCTGCTTTTGCTGTTTCC
TGAACTTCATACCTAGTACTTCTACATTTTTTGTTTTAATCTTTCGGGAG
TTCTGACTCGCAATATTTTTCGCTTCGATGCCACACCCCATCCAGACATG
CCACTGTACTAAAGCTACACGACATTCTCGTAAATAGGGGCACATTTGTT
GCGAGTTTGACCGGGCCTTTCTCCTCTTGAGACTGGGTTCGCATTCAAAT
CCCCCCAGCCCAGCTCCCCCACCTGGCCTTGCTTTTGCACCCCTTCTGCT
TCTGTCGGTCGTTGCGCAGCTTGACTTGCGTGTTTCTAGCGAGCAAGACG
GAGGAACAAATCACCAATGTCAGCCTGTTGGCCAAGGCCACAGGTCGAGA
CGACCTTCAGATACTGGGGAAGGAGCTAATCTTGTTACAGGTGAGTTGAG
GTTAGGGTGAAGCCATGGGAAAGTTGTGGGGTGGATATCGTATAGACGGG
GCAGCGGGGAGGGCGATGGGGTGGGTGAGGGGGAGAGTGGTGTGCGGATG
GTAAGGTGGAGATGGCTGGGTTAAGAGCAAGATAATAGGTGCAGAGCGTC
GGTTATAAAGACCAGCTGTACGGTACACCAAAACGAATGGGTCATTCGAG
TTGAAAGAATGATATTGGCACGAACAGCATGACAAAAGCACTCAACCGAG
CCATCGACGAACTCTCTCTCCTTTTACGATCAAACAATCCCCTTCTACCG
AGTAAACGAAATCGACCGCGGACGCTCTTGCTACTTCCGCTGCTACTGCT
ACCGCTGAAACGGAAGCAGGGTCTGAGCTTTCAGTTGGCCGTGTTCCACC
CCTACAGAGCGCTGCCGGCGTTGGTGGAGGGGGCCCGGTTGAGAGCCAAA
GCGGCGGGGGTCCCACCCCAGCCGGAGAGGATAATGGCGTTACATGACGC
CGCCAGAGCAGCCCTAGACGACATTCTGGTGAGAGACGGGAGAATACAAG
GAAAACGTACACAAGAGAAACCATGAACATTGCACGTTGTTTTGAAAGCG
CACCCATTCTGCGGCAGTCGCTGCAAGTAGGGGAGTTCGCAGCTGTTGCA
TTCTTATTTCGGTCGCTAGGGTCACTTCTTCGCTAACGAGGGCGCCTTTG
GCTGACAATCAATCGTTCAACTACGCGATCGTTGAGCACCAATATCGATG
TTTGATACGTGGTAGTTTCGAGAGTTGTCTCTGGTGTTCACTTTTTGCAG
CAGCAAACGATTGAAGTGTCCAGGGCCTGCACCTCGCACGTCACAACGTG
AAGTTGCAAGGACCCTGAGCACGCAAGTCATGGCGCAGTTTGGACGCGGT
TTCGTTTTTCGCTGTCGAGCGATTGATTGGCAGGCTGCATCGATGTGCCT
GTTCGCCGCAATTTGAAATCCTAACTGCGACGCGCCATAGTTTTTGGCAA
TCCATCCTGACCCCCCGCCGCCGCCGTTTGTCTCTCGACAAATCACATGC
TCACCGATGCCGTTGGAAAAGGTGACCACCCTACCGTTTCTCCACTCCCC
GTCGCGGTTAGCCTTGGCGGCACTACTTCGAGAAGGTGGGTGGGATCCTT
TCAAGGGGTTCTCTCAGAGAATATTGCTGTAGAAGCGTTAGGCGCTTTCA
AGTGGCCCCTGGGGTTGTGTGTTGGGTTGCGCATCAGGCAGCTTGCGGGT
ATGGTAACGACATACCTGTTTTTGCCACGTTGTAAAGCGGCAGAATGTCC
TTTTTCGGCCGTATTTACCCGGGTACGGGAAGCGTTCGCTTTGGCGCATA
TCGTCGTGCCCGACTGATACGAACGAATCGACTGTGACGACCGTTTGCGA
GGGCTCGACTCTTCTTCGGCAGAAGTACACACATACACCAGCACCGGTAT
CGTGGTGAATGATCAAGCGAGCGACTTGGGTACAGCAACTGTGGTAAGAC
TCTCACCCCGAACGATCTGTGATGCAACGGCAGCGCGCCGAATGGAAGCA
CCTCCTTTCAACGTGGCCGCGATGCTGAGCGAAGAGTTCGGCAACCGGAA
GGGCTGGAAAGAAGTGCTGAGAGAGGCCGACGAGCTGGTCAACGAACTGG
ACAAGGTTTTGGTGAGAACCTGATCTGTGAAGATTTGAGGGAGAAATAAT
AAAAAAAGCACGTGCTGGAGCTTGTACGTAGGACGGGCGGCGTCGCTCTG
TCGGCGTAAAGCACGATGTCCGAAATTTGTGCACGACCAATTTTTGTGGG
CATCGAACAGCAACCGTCCCTCTGCCTTTTCCCGGTCTCCCTATGCCCGC
GGCATCTACCACGCGCCCCTTGTTCTGTAGCCGTATCGCGTGGAGAAAGA
CAAGTTGATCGCAGTGAACAAGAAACTCAAGAAGCATGCCTTGTGGTCGG
AGAAGCGGAGCCGCGGCGCAGAAGGTGGTGGCGGCGGTAGCAGCAGCGAA
CGACGCAAGAGCAAGAAGACAAAGACGAAAGCGTGATGTAGACGTGCTTA
TCAGGCCAGGCCGAGCGAGAGATGGAGCGTGAGGAGAGACTGGCGGGTGT
AAGAGGAAAAAATATTCGGAGACGCGGTGCCGTCACGTTCCGTGAAGGGT
CACGGCATCAGACGGCTGTGTACGTGTAGTGGAACAGTTGGTTGCCGACA
TCGGGGTTTTTTACGCTGCTGCGATTGCAGTCACACGTGGAGCGATCAGC
GATTTGGTTTAACCCTAACCCTAACCCTAACCCTTGTCGGCGTAAATAAA
GAAAGCGGCGCCAACCTGCAAACTAAAACACGCGGTTTCTATTCGGAGCA
GC
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:342923..348924+

>mRNA_P-littoralis_Contig201.96.1 ID=mRNA_P-littoralis_Contig201.96.1|Name=mRNA_P-littoralis_Contig201.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1140bp|location=Sequence derived from alignment at P-littoralis_Contig201:342923..348924+ (Pylaiella littoralis U1_48)
ATGGAATTTAACTCGTCTACCCATCGAAGGCACTGGTTATTCACCAAGGA
AACACTCCGAGAGGTGCAAGAGGAGACTCGGCAGCTCGCCGCCGAGGTCT
GCGCCGCTGGAATCCCTCCCGAGGGATCTCGGAGCTTCGCGGCGACGAGG
TTGATGGTCGGTGACAAGGCCAATGCCGACGCTAAATTTAAAACGGAGCT
CGACATCGCAAAAGTCAAGGCTGAGGAAGTGCCGGTCGCAGGAGAGTCAA
CGACGGACAACACCACAGGCGGTGGCGGGGGTAAGAAGCGACCGGCGCCG
AACGCCGCCGCAGCAGAACCCGTCCTGACGGTGGAGGAGGAATGCTTGGT
GAAGAGCTACTACGCCAAGAAGATCCAAGAGACGTGCGGCCGCGACTCCG
CGGATGAGGATCTACGGAGATCCGACAAGGTCCAGGCGACCGCTGTTGCT
TTCTTTCAGCGCTTCTATCTGTCCAATAGCGTCCTGGAACATGACCCGAA
AATTCTCATCTTGACTTGCGTGTTTCTAGCGAGCAAGACGGAGGAACAAA
TCACCAATGTCAGCCTGTTGGCCAAGGCCACAGGTCGAGACGACCTTCAG
ATACTGGGGAAGGAGCTAATCTTGTTACAGCAGGGTCTGAGCTTTCAGTT
GGCCGTGTTCCACCCCTACAGAGCGCTGCCGGCGTTGGTGGAGGGGGCCC
GGTTGAGAGCCAAAGCGGCGGGGGTCCCACCCCAGCCGGAGAGGATAATG
GCGTTACATGACGCCGCCAGAGCAGCCCTAGACGACATTCTGGTGACCAC
CCTACCGTTTCTCCACTCCCCGTCGCGGTTAGCCTTGGCGGCACTACTTC
GAGAAGCGCGCCGAATGGAAGCACCTCCTTTCAACGTGGCCGCGATGCTG
AGCGAAGAGTTCGGCAACCGGAAGGGCTGGAAAGAAGTGCTGAGAGAGGC
CGACGAGCTGGTCAACGAACTGGACAAGGTTTTGCCGTATCGCGTGGAGA
AAGACAAGTTGATCGCAGTGAACAAGAAACTCAAGAAGCATGCCTTGTGG
TCGGAGAAGCGGAGCCGCGGCGCAGAAGGTGGTGGCGGCGGTAGCAGCAG
CGAACGACGCAAGAGCAAGAAGACAAAGACGAAAGCGTGA
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