mRNA_P-littoralis_Contig201.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.94.1
Unique NamemRNA_P-littoralis_Contig201.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:327264..327709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size446
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.5435383-UTR-P-littoralis_Contig201:327263..3272951680789985.5435383-UTR-P-littoralis_Contig201:327263..327295Pylaiella littoralis U1_48UTRP-littoralis_Contig201 327264..327295 -
1680789985.5622795-UTR-P-littoralis_Contig201:327688..3277091680789985.5622795-UTR-P-littoralis_Contig201:327688..327709Pylaiella littoralis U1_48UTRP-littoralis_Contig201 327689..327709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.553373-CDS-P-littoralis_Contig201:327295..3276881680789985.553373-CDS-P-littoralis_Contig201:327295..327688Pylaiella littoralis U1_48CDSP-littoralis_Contig201 327296..327688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.94.1prot_P-littoralis_Contig201.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 327296..327688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.94.1

>prot_P-littoralis_Contig201.94.1 ID=prot_P-littoralis_Contig201.94.1|Name=mRNA_P-littoralis_Contig201.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MSMKLLKLKYFRERKMSGMTWISFFFRALEGLWRLLEKRFCFSTAALKAG
AEGQFLIDWFPDFEDGLGITPSFHFTSFDSTLCVFVRLVCSEPDFSHSTC
LVLYRHAGGDVEATVIGRTDGMETAPPFVQ*
back to top

mRNA from alignment at P-littoralis_Contig201:327264..327709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.94.1 ID=mRNA_P-littoralis_Contig201.94.1|Name=mRNA_P-littoralis_Contig201.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=446bp|location=Sequence derived from alignment at P-littoralis_Contig201:327264..327709- (Pylaiella littoralis U1_48)
GTGAGGGGTTGCTTGACGAGGATGAGCATGAAACTACTGAAACTTAAGTA
TTTTCGCGAACGAAAAATGAGCGGGATGACGTGGATTTCTTTTTTTTTTA
GGGCATTGGAGGGGTTGTGGAGACTGCTAGAGAAACGTTTTTGCTTTTCT
ACTGCTGCCTTGAAGGCTGGAGCAGAGGGGCAGTTCTTGATAGATTGGTT
TCCTGATTTCGAGGACGGGTTAGGGATCACGCCGTCCTTTCACTTCACTT
CCTTTGACAGCACCTTGTGCGTCTTTGTGAGATTGGTTTGCTCCGAGCCG
GATTTTTCACATAGTACTTGCTTGGTATTGTACCGTCATGCGGGAGGGGA
TGTCGAGGCGACGGTAATAGGCAGGACGGACGGCATGGAAACCGCACCGC
CATTTGTCCAATGACATGATACGGAAAAACACCCGTATACTGTACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig201:327264..327709-

>mRNA_P-littoralis_Contig201.94.1 ID=mRNA_P-littoralis_Contig201.94.1|Name=mRNA_P-littoralis_Contig201.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig201:327264..327709- (Pylaiella littoralis U1_48)
ATGAGCATGAAACTACTGAAACTTAAGTATTTTCGCGAACGAAAAATGAG
CGGGATGACGTGGATTTCTTTTTTTTTTAGGGCATTGGAGGGGTTGTGGA
GACTGCTAGAGAAACGTTTTTGCTTTTCTACTGCTGCCTTGAAGGCTGGA
GCAGAGGGGCAGTTCTTGATAGATTGGTTTCCTGATTTCGAGGACGGGTT
AGGGATCACGCCGTCCTTTCACTTCACTTCCTTTGACAGCACCTTGTGCG
TCTTTGTGAGATTGGTTTGCTCCGAGCCGGATTTTTCACATAGTACTTGC
TTGGTATTGTACCGTCATGCGGGAGGGGATGTCGAGGCGACGGTAATAGG
CAGGACGGACGGCATGGAAACCGCACCGCCATTTGTCCAATGA
back to top