mRNA_P-littoralis_Contig201.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.69.1
Unique NamemRNA_P-littoralis_Contig201.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig201.69.1 vs. uniprot
Match: A0A6H5K3Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.080e-18
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   97 MATTSHPHTPPRKPKRRRDAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATA 276
            MAT+S+P TP R+PKR+RD  +E  GLG DD+DFCTPPGVTR+V  TTPL PRSPNAAT+
Sbjct:    1 MATSSNPRTPLREPKRKRDTGLEISGLGPDDDDFCTPPGVTRRVANTTPLTPRSPNAATS 60
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BLAST of mRNA_P-littoralis_Contig201.69.1 vs. uniprot
Match: D8LFC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFC5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.930e-15
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:   97 MATTSHPHTPPRKPKRRRDAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATAP 279
            M T+S+P +P R+PKR+RD  ++ FGLGSDD+DFCTPPG TRKVRPTTP       AA +P
Sbjct:    1 MTTSSNPRSPLREPKRKRDTDLDFFGLGSDDDDFCTPPGATRKVRPTTPXXXXXXXAAASP 61
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BLAST of mRNA_P-littoralis_Contig201.69.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.910e-10
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:   97 MATTSHPHTPPRKPKRRRDAAMENFGLGSDDED 195
            MATTSHPHTPPR+PK +RDAA++NFGLGSDDED
Sbjct:    1 MATTSHPHTPPREPKTKRDAALDNFGLGSDDED 33
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K3Q8_9PHAE1.080e-1870.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFC5_ECTSI3.930e-1560.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN5_9PHAE5.910e-1084.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:265167..265966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size314
Hectar predicted targeting categoryother localisation
Exons3
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789988.4006436-CDS-P-littoralis_Contig201:265166..2652481680789988.4006436-CDS-P-littoralis_Contig201:265166..265248Pylaiella littoralis U1_48CDSP-littoralis_Contig201 265167..265248 +
1680789988.4101965-CDS-P-littoralis_Contig201:265541..2656511680789988.4101965-CDS-P-littoralis_Contig201:265541..265651Pylaiella littoralis U1_48CDSP-littoralis_Contig201 265542..265651 +
1680789988.4244761-CDS-P-littoralis_Contig201:265846..2659661680789988.4244761-CDS-P-littoralis_Contig201:265846..265966Pylaiella littoralis U1_48CDSP-littoralis_Contig201 265847..265966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.69.1prot_P-littoralis_Contig201.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 265167..265966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.69.1

>prot_P-littoralis_Contig201.69.1 ID=prot_P-littoralis_Contig201.69.1|Name=mRNA_P-littoralis_Contig201.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
HLTLSLSSTPPEHPSQDRIGRLTATKKATETAMATTSHPHTPPRKPKRRR
DAAMENFGLGSDDEDFCTPPGVTRKVRPTTPLAPRSPNAATAPVYVGTTR
DFEQ
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mRNA from alignment at P-littoralis_Contig201:265167..265966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.69.1 ID=mRNA_P-littoralis_Contig201.69.1|Name=mRNA_P-littoralis_Contig201.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=800bp|location=Sequence derived from alignment at P-littoralis_Contig201:265167..265966+ (Pylaiella littoralis U1_48)
CACCTCACGCTCTCCTTGTCGTCTACTCCACCAGAGCATCCAAGCCAAGA
TCGCATAGGAAGACTCACAGCAACAAAAAAAGGTTAGGCTGTGAAGACCG
CTCCTGGATGACAAGATGCACACCTTTTGTTTGAATTGAGCATTCACTGC
CATGGCGGCATCGCGAAGCTCGTACGTTGTTGCCATCAGAGACCAGACTG
CTGCCCAACGAACCGAACGTAGACTTCGATGCCGTACTGCTCATCTATGT
AATTCTGCGGCCGGTTCATAGTTTATCCTCTCCGACGCCTATTGCATGGG
TTTTGCTGTACTTGGTACCGTCTTCGATCTCAGCGATCCCCATGCTTGCA
CATCTCCCGTACACGCTTACAATAGCAACAGAGACAGCCATGGCCACCAC
GAGCCATCCTCACACTCCACCCAGGAAGCCGAAGAGGAGGAGGGATGCCG
CCATGGAAAACTTCGGGCTAGGCTCGGATGATGAGGTAAGACCATCAGTG
TGGTGTGATAGACACGTTTTCCTTGCGATGTCGGGTCATACATCCTGAAC
ATGAACCCACAGTGACTCACACACAAACACACACACACATGTGAGAATCA
ACAACAACAACAACAACACACACACAATCACACGATGATGCACCCTCTCC
CCACCCGTGCATCCGTCCGTGATCCCACAGGACTTTTGCACTCCCCCAGG
GGTGACGCGGAAAGTAAGACCCACGACACCTCTCGCCCCACGGTCCCCGA
ACGCAGCGACAGCACCGGTGTATGTCGGTACAACACGCGACTTCGAGCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:265167..265966+

>mRNA_P-littoralis_Contig201.69.1 ID=mRNA_P-littoralis_Contig201.69.1|Name=mRNA_P-littoralis_Contig201.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig201:265167..265966+ (Pylaiella littoralis U1_48)
CACCTCACGCTCTCCTTGTCGTCTACTCCACCAGAGCATCCAAGCCAAGA
TCGCATAGGAAGACTCACAGCAACAAAAAAAGCAACAGAGACAGCCATGG
CCACCACGAGCCATCCTCACACTCCACCCAGGAAGCCGAAGAGGAGGAGG
GATGCCGCCATGGAAAACTTCGGGCTAGGCTCGGATGATGAGGACTTTTG
CACTCCCCCAGGGGTGACGCGGAAAGTAAGACCCACGACACCTCTCGCCC
CACGGTCCCCGAACGCAGCGACAGCACCGGTGTATGTCGGTACAACACGC
GACTTCGAGCAG
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