mRNA_P-littoralis_Contig201.50.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.50.3
Unique NamemRNA_P-littoralis_Contig201.50.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig201.50.3 vs. uniprot
Match: A0A836C886_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C886_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.440e-11
Identity = 58/198 (29.29%), Postives = 91/198 (45.96%), Query Frame = 2 
Query:  473 SALVPLLLTVVICGAGSHGIGFAGVSLGYFTWSVRCEGVVTVAGEGDRANGVQTYNLGWARYEGTGPTTASNSPTVDVDSNNGTAGSDLGKGGIAGSSIAEEGWLLDIDVVSALFGGLNAVGHLAGFAFYAVGLFTAQRLFRSQFRSDRC-LFRPAAKGAVLLLMWTVVVGSVGFYASARESFTRSVLTTLHSEDFLC 1063
            S  +PLL+ +       H     G S GYF+W ++CEG+V + G    +   + Y+LGWA++             V  D            GG+AG++      L  +D  +A FG +  + HL     +A  L+    LFR  FR+     F+ A +G V LL+  VV+  V F  +A  +FT +V++ L S  + C
Sbjct:   43 SYFLPLLVMLSAGALAIHIAALTGSSKGYFSWDIKCEGLV-LGGTTSGSVLTRRYDLGWAKF-------------VITD------------GGVAGAATP----LGKVDAATAFFGTVTGIVHLVSAVSHAALLYAIAWLFRHDFRAPAWRAFKLAHRGVVALLVANVVLVMVVFGVTANYAFTDAVMSNLKSSSYFC 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.50.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C886_9STRA1.440e-1129.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:208797..213385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1096
Hectar predicted targeting categoryother localisation
Exons3
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.9346516-CDS-P-littoralis_Contig201:208796..2092771680789987.9346516-CDS-P-littoralis_Contig201:208796..209277Pylaiella littoralis U1_48CDSP-littoralis_Contig201 208797..209277 -
1680789987.9502661-CDS-P-littoralis_Contig201:209942..2100941680789987.9502661-CDS-P-littoralis_Contig201:209942..210094Pylaiella littoralis U1_48CDSP-littoralis_Contig201 209943..210094 -
1680789987.9588008-CDS-P-littoralis_Contig201:212922..2132221680789987.9588008-CDS-P-littoralis_Contig201:212922..213222Pylaiella littoralis U1_48CDSP-littoralis_Contig201 212923..213222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.9695427-UTR-P-littoralis_Contig201:213222..2133851680789987.9695427-UTR-P-littoralis_Contig201:213222..213385Pylaiella littoralis U1_48UTRP-littoralis_Contig201 213223..213385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.50.3prot_P-littoralis_Contig201.50.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 208797..213222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.50.3

>prot_P-littoralis_Contig201.50.3 ID=prot_P-littoralis_Contig201.50.3|Name=mRNA_P-littoralis_Contig201.50.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MENAAGEGTGVRLADCSDDTRQKSSERVPRGRCQPPIAPAPNPRRGELMA
VKNKDLAVHSVNRSSRRHPSRIVMMTKGGRAAPHKPMPRWKMGYVGFKRK
VKSSALVPLLLTVVICGAGSHGIGFAGVSLGYFTWSVRCEGVVTVAGEGD
RANGVQTYNLGWARYEGTGPTTASNSPTVDVDSNNGTAGSDLGKGGIAGS
SIAEEGWLLDIDVVSALFGGLNAVGHLAGFAFYAVGLFTAQRLFRSQFRS
DRCLFRPAAKGAVLLLMWTVVVGSVGFYASARESFTRSVLTTLHSEDFLC
QVLSASTLQQ*
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mRNA from alignment at P-littoralis_Contig201:208797..213385-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.50.3 ID=mRNA_P-littoralis_Contig201.50.3|Name=mRNA_P-littoralis_Contig201.50.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=4589bp|location=Sequence derived from alignment at P-littoralis_Contig201:208797..213385- (Pylaiella littoralis U1_48)
GGAGCAGATATTGCAACGAACACAAAGAGTTTCAAAATTCACCTCGAAAA
TGTAACTGCTGTTGCAATTTTCAGTCTGGGATCTTGAATCGCGGGTGTCG
GCGAGTCACGTTCAATTAACAACAGCAGTATAGCAGCCCCCGTGCATCCG
CGTTGGATGGGGGATGGAAAACGCTGCAGGCGAGGGAACGGGTGTAAGGC
TAGCAGACTGCAGCGATGATACTCGGCAAAAGTCCTCCGAGCGCGTGCCA
AGAGGACGATGTCAACCACCGATTGCCCCAGCACCTAATCCTAGACGTGG
AGAACTCATGGCGGTCAAGAACAAGGACCTCGCGGTGCACAGCGTCAATC
GATCGAGCAGGCGTCATCCCTCCAGGATCGTCATGATGACCAAGGGTGGT
CGAGCTGCTCCGCACAAGCCCATGCCGAGATGGAAGATGGGATACGTTGG
ATTCAAGCGGAAGGTAGAGTGGTCGCACGCTGCGCACACCCTAAAATTTT
AAATTTTTCTGTCCATTTTTCTTGCAAGCTGACTGATACCAGTATGATAC
GATATGGGTTTCAGCAATCGACCTTCCCGGTGTGCGTTTTCCCGGATGCG
CCTGGGACGAGCAGACGGCACCACGTAGCGGAGACTTGTGTGTCTGCACA
CTCAGATCTGCTGCTGGGGTCGAGATATCGGAGATCGAACCTATGGTTCA
GGCAGTTCGGAAACCGTCCGCACCTCAGCCCTAACCAAACATCTACTTCC
AATACGCACTGTAGTAGCTGTTGTGCTCGCCGTCATGGGCCGCAACATCC
TATCCGCGGGTCATGCGCGAGGTAAATACAATAGCAGAAGCGATATAACG
CACTGCTGTAGACTCGCCGTCAAGGCATTGAGGCCCTTTGACGACGAGTA
CATCAGTAGGAGAGACGAAGTGTTGTGTTCTGGGCGGAGGCGCGGACGAT
TTCTGGACTGCTGTGCCACAATTCTTCGACCCCCGACCGCAACAGCCCCA
GTATAAGATCTGAGCGTGCCAACACGCAGGTCACCGCTACAAGTTGTACA
TGGCTACTACATGGTATCTTCTGCTGATTGTGCGCTTACGGTAGGGAAAT
TGTGCACGGAAAGGTCATTATATCAGCCCCCTCTCGTGCTGTCTCGGCTT
TAGACAAGAGGGAGCATATCATGGGAGCTTTCCATCTTGAACTTCGATTC
CGAAATAATGCGGAGTTTCGAAACGACCAACATGCGTACAGTATCACGAG
AACGCCCCAATCATCGTCTCTCAACCATTTTCCCGACTCCTACCCTCTTC
GGCTGGTTTTATAAGCCTATTACGATCGTTATTGTGTGCTCATTCTGTCC
TGGGTCCGAGGTGTTGAGACAATAAATCGATTCTTCGTGCATATGAGTCA
AGAATCTTCTGCAGGCCCCCCATATTCGGTTCAGTTAGTAATCTCGTAAA
CCTTGTGGCAGCTCTGCAGTACGGATTGTATGATATATGCACTTGTTTAT
TCCATATGATATACTCTCTCTATATGTATGTGTGATATAATATTTGCTGT
CTGATTTGTGTGTGCGTTGCTCCTGCTGCTCGTCATGCGTTCGGAAGTCG
GTGAAGTCACGCGTGCTGGAACTGTTTTTCGTGTCATACCTAGCAGTGGA
AATCGATAATTTCGTGAGTAAACAAAAATGACCTTACCATTGACGGAGTT
TACGATCACCTCGGCTTCGTTGGGGTGTGAACTGTTGCGGCAGAAAAAAC
ACACTTTATCTCGGGTACTGGACTTGTCACAAAGAGCAACGTCCGGCATG
GTTTTGTCAAACTCTGCGCAATCGGGCTCGACAGGTCTCCCGACGCAGTC
GACGTCGTCGGCGTGCAGGTGCTTGACGTTGTTCTCATCTCGCAAGTGTT
TGCCCCCGGCGGCGGTCCGGAGGCGAACGTTTGAACCTACATGCACCCTA
TGAAAGTTACACTGCTTCCGGCGGGATCCTTGAGGCGGTGTTACTGACCT
TTTATCTTGTGGACATAATCACGGGGTCCTTGAGGCGGTAGCACTGGCCC
TCATATACTATGGGCACTTGTTTTGTGTCAATAGGGTGTGAGGGGCAGCC
TCAAGGACCCCGCCGGGGGGAAACACGAGCGAGGTGAGGATAACGTCGAG
TACCTGCACGACGACGGCGCCGGCTGCGTTGGGAGATCCGTCGCGTCTGG
GTGCGCACATTCCTGCGCTTAGAATATGACATAACTATGCCCGACGTTCC
TCTTCACGACATGTTGGGTACTACTTGAAACAAGGCGCATCTTTTCTGCA
GCAACAGCACACACTGCGACAGGGCCGAGGTTCCCTTCGACGCACAGAAG
TATCTCGAAGCCAAGCTCCTTGAGCTCGAGGAGACACATAGGGTTCCCTC
AGCAAGCGCCCCCGGTCCGAATTCTAAGTGTTCGCGTCTACTAACGCTCA
TTCTGCGTAAGAATACTTTCAGATTTTTTTATAGTACCCATCTTCTTCTT
GCGTGCATACTACTGCAGCTGGAAAACAGTCATTTCGTGAGTGAACAAAA
GTCGACTGGAATGTTGTCGAGAAAAAGAGACGGCCGAACTCTTGTTGCAA
TACAAGTTCAGGCAAGCATCACCGAAGAAAGGTGCACTGTGGAGAACAAA
AACAATCCTGTGTGACCTCGGCTGGTCCGCCAGCACACACCGAAAGGCGC
AAGCTGGCGTCCAGAACATGAACACATGGAAGCATAGAATCGTGTTGACC
TTTGTTTGGACAAGGACTCAGATAAAAAATAAAAGTTAAGCCCTTGGCAG
CAATTTAGCCAGTATGGCTCGCCTGTACTCACTCGTTTAAAGACTTCGAT
TCGATAGGATACCTGAGGATATCTCCCATCGCTCACCCATGCAAGTAGCA
ACAAAAGGTAGGCCTCACCTCCATCTGATGTTTAGGGCACCGGTCGCCCC
GGTGGACTAGTGGTCCCCTCGGTAACCATTAGATGCAGAGGAACGGGGGT
TCGATTCCCGGCGAATGTGTTCCTTTGCTACTTTGAAAGCGGCTATGCTG
TTAGTAAAAGCAGATTCGGCTTCGCCGACGAGGGTGGGGACCGCGGACCC
CTGCTCGCGAGAAAAAATCTCACGCATGTACCGCAGAAGGAAGGCGGGGG
TAACCCCTCCTGTGTTGACCTTCCTCCTGTGTGACCCCGTCGATGGGCCT
AGCCTGTAGTTTGAACCGCAGGGTGCAGACTAGTGTGCCAGAGAATATGG
GATGACAACACACATATGATCCCCTCGACTTCCGCCCCAAGGTAAAATCC
AGCGCTCTTGTGCCGCTGCTCCTGACCGTCGTCATATGCGGAGCCGGAAG
TCACGGCATCGGTTTCGCGGGAGTTTCTCTCGGATACTTTACATGGAGTG
TACGCTGCGAAGGAGTGGTCACTGTGGCGGGGGAGGGTGACAGGTGATGC
ACGTGCTGAATAAATGCCGTACAATAATCCGCGTCCATCCAGCGCAATAT
TAGCTGTCATAAACTGAGCATAAAGCTGAACAAACCTTAGCCTCGCCTCG
AGAATGACGCCCGTTCTACGAAATCAAAAGCGTTTGGGACCTTGGCGAGA
GGGTCTTTTCGGGCGTGGAACTAGTTATATTGCGCCACATAAAAAATAAG
GAGGGAGTGACGGAGAGACACGCACAAGAGTAGAAGTGCGGAATGTTGCG
AAGACAGTCGATTATGAAGCAAACGAGAAAATAATATGGGGTCGAGATGC
GGTTTGCTTCCTAAAATAATACGACTTGTAGAGAAATGTATTAATGATCG
TGTGTGTGATGTGATGGACGGAACTAACACTGAGCGAACGGCAGCAAGAG
GCAATCCGCCACAACTTCGGTATCATGAGTGTTGAAAAGGACCTAAAGTA
CCAGGCTACCGGGTAGGGTAGAGGTATGTGAGTATTCGGAGTTTTCCCGC
GTTCAAGAGGCGCGACTCCGAGAAATGCTCTAAAACATGAAAACCCTCCC
CCACCCCCTAAACTACGCCCGTCCCCCAACTCGCCCCCTATTCCATCCCA
TCTACCAACGGGAATTTTTTGAAAACCACACGCCACGAACACGCGCACCC
CCATGAAGGGCGAACGGGGTGCAAACCTACAACCTGGGTTGGGCGCGATA
CGAAGGCACGGGTCCCACCACGGCCTCAAACTCCCCCACCGTGGACGTCG
ACAGCAACAACGGAACGGCTGGGTCTGATCTTGGGAAGGGAGGAATCGCG
GGGTCGAGCATCGCGGAGGAGGGCTGGCTTTTGGACATCGACGTCGTCAG
CGCGTTGTTCGGTGGACTTAACGCAGTCGGGCACCTGGCAGGTTTCGCCT
TCTACGCTGTCGGACTATTCACTGCCCAGCGACTGTTTCGGTCACAATTC
CGGAGCGATCGGTGCTTGTTTCGCCCGGCGGCGAAAGGTGCAGTGTTGCT
GCTTATGTGGACGGTCGTGGTGGGCAGTGTGGGTTTTTACGCATCCGCGC
GGGAGAGCTTCACGCGATCCGTGCTCACCACTCTCCACAGCGAAGATTTT
CTCTGCCAGGTATTGAGTGCTTCTACGCTACAGCAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:208797..213385-

>mRNA_P-littoralis_Contig201.50.3 ID=mRNA_P-littoralis_Contig201.50.3|Name=mRNA_P-littoralis_Contig201.50.3|organism=Pylaiella littoralis U1_48|type=CDS|length=933bp|location=Sequence derived from alignment at P-littoralis_Contig201:208797..213385- (Pylaiella littoralis U1_48)
ATGGAAAACGCTGCAGGCGAGGGAACGGGTGTAAGGCTAGCAGACTGCAG
CGATGATACTCGGCAAAAGTCCTCCGAGCGCGTGCCAAGAGGACGATGTC
AACCACCGATTGCCCCAGCACCTAATCCTAGACGTGGAGAACTCATGGCG
GTCAAGAACAAGGACCTCGCGGTGCACAGCGTCAATCGATCGAGCAGGCG
TCATCCCTCCAGGATCGTCATGATGACCAAGGGTGGTCGAGCTGCTCCGC
ACAAGCCCATGCCGAGATGGAAGATGGGATACGTTGGATTCAAGCGGAAG
GTAAAATCCAGCGCTCTTGTGCCGCTGCTCCTGACCGTCGTCATATGCGG
AGCCGGAAGTCACGGCATCGGTTTCGCGGGAGTTTCTCTCGGATACTTTA
CATGGAGTGTACGCTGCGAAGGAGTGGTCACTGTGGCGGGGGAGGGTGAC
AGGGCGAACGGGGTGCAAACCTACAACCTGGGTTGGGCGCGATACGAAGG
CACGGGTCCCACCACGGCCTCAAACTCCCCCACCGTGGACGTCGACAGCA
ACAACGGAACGGCTGGGTCTGATCTTGGGAAGGGAGGAATCGCGGGGTCG
AGCATCGCGGAGGAGGGCTGGCTTTTGGACATCGACGTCGTCAGCGCGTT
GTTCGGTGGACTTAACGCAGTCGGGCACCTGGCAGGTTTCGCCTTCTACG
CTGTCGGACTATTCACTGCCCAGCGACTGTTTCGGTCACAATTCCGGAGC
GATCGGTGCTTGTTTCGCCCGGCGGCGAAAGGTGCAGTGTTGCTGCTTAT
GTGGACGGTCGTGGTGGGCAGTGTGGGTTTTTACGCATCCGCGCGGGAGA
GCTTCACGCGATCCGTGCTCACCACTCTCCACAGCGAAGATTTTCTCTGC
CAGGTATTGAGTGCTTCTACGCTACAGCAGTAG
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