mRNA_P-littoralis_Contig201.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.34.1
Unique NamemRNA_P-littoralis_Contig201.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A6H5JPR9_9PHAE (Aconitase_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPR9_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 1.000e-138
Identity = 214/256 (83.59%), Postives = 227/256 (88.67%), Query Frame = 1 
Query:    1 MLSFATAVTLVAAASSRVSAFVVPVSTAGT--VVSRAA--SQSGVAPRRATDADAAI--DPRVKEMPRNRERPDKYTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLDE 750
            M  FAT  T+VAA SS VSAF VPV TAGT  V SR    S +GVAPRRA +ADAA   DPRVKEMP+NR+RPDKYTG CFVVKDNIDTDQIIPAEYLTLVPS A+EYEKLGSYAMIGLPD Y TRYVEEGSM+T+YPI+IAGDNFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYECQERLVD FTTGD VTVDLTTDTLIN+TT GK+YPL PLGDAGPVINAGGLFPYAIKTGMIKK+DE
Sbjct:    2 MWGFATTATMVAAVSSSVSAFFVPVPTAGTTAVASRPGCKSSAGVAPRRAAEADAAAIDDPRVKEMPKNRDRPDKYTGQCFVVKDNIDTDQIIPAEYLTLVPSNANEYEKLGSYAMIGLPDVYTTRYVEEGSMATRYPIIIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDAFTTGDDVTVDLTTDTLINHTT-GKEYPLNPLGDAGPVINAGGLFPYAIKTGMIKKMDE 256
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BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: B7ZGN7_9PHAE (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN7_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 4.140e-127
Identity = 193/250 (77.20%), Postives = 215/250 (86.00%), Query Frame = 1 
Query:    1 MLSFATAVTLVAAASSRVSAFVVPVSTAGTVVSRAASQSGVAPRRATDADAAIDPRVKEMPRNRERPDKYTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLDE 750
            ML FA A+T+VA+ +SR  AFV P+S AG   +R A QS VA + A   D  +DPR KEMP+ RERP KYTGACFVVKDNIDTDQIIPAEYLTLVPS+ADEYEKLGSYAMIGLP  Y+TR+VEEGSM TKYPIMIAGDNFGCGSSREHAPIA+GAAG RVVVAESYARIFFRNSIATGELYPYECQERLVD+  TGD +TVDL+TDTL N+  +GK+YPL PLGDA PVINAGGLFP+AI+TGMIKKL+E
Sbjct:    3 MLGFAVALTMVASVTSRAGAFVPPISAAGAAATRPACQSSVARQAAASDD--MDPREKEMPKFRERPTKYTGACFVVKDNIDTDQIIPAEYLTLVPSKADEYEKLGSYAMIGLPSVYKTRFVEEGSMKTKYPIMIAGDNFGCGSSREHAPIALGAAGARVVVAESYARIFFRNSIATGELYPYECQERLVDIIKTGDELTVDLSTDTLTNHA-SGKEYPLTPLGDAAPVINAGGLFPFAIQTGMIKKLEE 249
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BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A7N0U1F4_KALFE (Aconitase_C domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0U1F4_KALFE)

HSP 1 Score: 263 bits (671), Expect = 5.720e-85
Identity = 126/176 (71.59%), Postives = 152/176 (86.36%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMI 735
            + G C+VVKDNIDTDQIIPAEYLTLVPS+ DEY+KLGSYAMIGLP++Y TR++E G   TKY I+IAGDNFGCGSSREHAP+A+GAAG + VVAESYARIFFRNS+ATGE+YP EC+ R+ D  +TGDVVT++L  + LIN++T GK++ LKP+GDAGPVI AGG+F YA KTGMI
Sbjct:   82 FHGVCYVVKDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYAMIGLPESYRTRFIEPGESETKYSIVIAGDNFGCGSSREHAPVALGAAGVKAVVAESYARIFFRNSVATGEIYPLECEGRICDECSTGDVVTIELKENKLINHST-GKEFALKPIGDAGPVIEAGGIFAYARKTGMI 256
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BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A251VAI3_HELAN (Putative aconitase/3-isopropylmalate dehydratase protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VAI3_HELAN)

HSP 1 Score: 260 bits (664), Expect = 6.170e-84
Identity = 127/176 (72.16%), Postives = 149/176 (84.66%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMI 735
            + G C+VV+DNIDTDQIIPAEYLTLVPS+ DEY+KLGSYA++GLP++YETR+VE G   TKYPI+IAGDNFGCGSSREHAP+A+GAAG   VVAESYARIFFRNS+ATGE+YP E + R+ D   TGDVVT++L    LIN+TT GKQY LKP+GDAGPVI AGG+F YA K GMI
Sbjct:   76 FHGECYVVRDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYALVGLPESYETRFVETGEYRTKYPIIIAGDNFGCGSSREHAPVALGAAGAVAVVAESYARIFFRNSVATGEIYPLESEVRVCDECKTGDVVTIELEKSVLINHTT-GKQYALKPIGDAGPVIEAGGIFAYARKAGMI 250
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BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: UPI002009A417 (3-isopropylmalate dehydratase small subunit 1-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009A417)

HSP 1 Score: 256 bits (653), Expect = 2.530e-83
Identity = 127/180 (70.56%), Postives = 146/180 (81.11%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLD 747
            + G C+VV DNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLP  YE+R+VE G+  TKY I+I GDNFGCGSSREHAP+A+GAAG   VVAESYARIFFRNS+ATGE+YP E + RL +  TTGDVVT++L    LIN+TT GK+Y LKP+GDAGPVI AGG+F YA K GMI   D
Sbjct:    8 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYESRFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCEECTTGDVVTIELGESKLINHTT-GKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 186
[Close]
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A4D9BDJ2_SALSN (3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BDJ2_SALSN)

HSP 1 Score: 257 bits (656), Expect = 8.270e-83
Identity = 128/180 (71.11%), Postives = 145/180 (80.56%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLD 747
            + G C+VV DNIDTDQIIPAEYLTLVPS  DEYEKLGSYA+IGLP  YE R+VE G+  TKY I+I GDNFGCGSSREHAP+A+GAAG   VVAESYARIFFRNS+ATGE+YP E + RL D  TTGDVVT++L    LIN+TT GK+Y LKP+GDAGPVI AGG+F YA K GMI   D
Sbjct:   75 FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPDEYEKLGSYALIGLPSTYEARFVEPGATKTKYSIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLESEGRLCDECTTGDVVTIELGESKLINHTT-GKEYKLKPIGDAGPVIEAGGIFAYARKAGMIPSRD 253
[Close]
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A0A0KPB2_CUCSA (Aconitase_C domain-containing protein n=4 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0KPB2_CUCSA)

HSP 1 Score: 253 bits (647), Expect = 1.570e-81
Identity = 130/195 (66.67%), Postives = 150/195 (76.92%), Query Frame = 1 
Query:  151 AAIDPRVKEMPRNRERPDKYTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMI 735
            A I PR    P +      + G C+VV DNIDTDQIIPAEYLTLVPS   EYEKLGSYA+IGLP +Y TRYVE   M TKY I+IAGDNFGCGSSREHAP+A+GA+G   VVAESYARIFFRNS+ATGE+YP E + R+ +   TGDVVT++L    LIN+TT GK+Y LKP+GDAGPVI AGG+F YA KTGMI
Sbjct:   57 ATIIPRATASPSST----AFHGLCYVVGDNIDTDQIIPAEYLTLVPSNPSEYEKLGSYALIGLPSSYSTRYVESEEMKTKYSIIIAGDNFGCGSSREHAPVALGASGAVAVVAESYARIFFRNSVATGEIYPLESETRICEECKTGDVVTIELAESRLINHTT-GKEYKLKPIGDAGPVIEAGGIFAYARKTGMI 246
[Close]
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A7J7Q700_9CHLO (Small subunit of isopropylmalate dehydratase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q700_9CHLO)

HSP 1 Score: 252 bits (643), Expect = 2.070e-81
Identity = 125/175 (71.43%), Postives = 146/175 (83.43%), Query Frame = 1 
Query:  214 GACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIK 738
            G CFV KDNIDTDQIIPAEYLTLVPS+ DEYEKLGSYA+IGLPD Y T++VEEG M TKY ++I G NFGCGSSREHAP+A+GAAG++VVVAESYARIFFRN ++TGELYP E   R+ +   TG+ VTVD+  + LIN+TT GK+Y LK LGDAGPVI+AGGLF YA + GMIK
Sbjct:   38 GTCFVTKDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPDEYTTKFVEEGEMKTKYKVIIGGQNFGCGSSREHAPVALGAAGSQVVVAESYARIFFRNCMSTGELYPVETDVRVCEELNTGEDVTVDMEANVLINHTT-GKEYQLKALGDAGPVIDAGGLFDYARQQGMIK 211
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BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: A0A251SVK6_HELAN (Putative hydrolyase LeuD/HacB/DmdB, Aconitase/isopropylmalate dehydratase n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SVK6_HELAN)

HSP 1 Score: 254 bits (649), Expect = 2.140e-81
Identity = 125/176 (71.02%), Postives = 148/176 (84.09%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMI 735
            + G C+VV+DNIDTDQIIPAEYLTLVPS+ DEY+KLGSYA+IGLP +YE R+VE G  ++KY I+IAGDNFGCGSSREHAP+A+GAAG   VVAESYARIFFRNS+ATGE+YP E + R+ D   TGDVVT++L    L+N+TT GKQY LKP+GDAGPVI AGG+F YA KTGMI
Sbjct:   75 FHGTCYVVRDNIDTDQIIPAEYLTLVPSKPDEYKKLGSYALIGLPSSYEQRFVEPGENNSKYSIIIAGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEVYPLESEVRVCDECRTGDVVTIELEGSLLVNHTT-GKQYRLKPIGDAGPVIEAGGIFAYARKTGMI 249
[Close]
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Match: S8DSG1_9LAMI (Aconitase_C domain-containing protein n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DSG1_9LAMI)

HSP 1 Score: 253 bits (646), Expect = 2.230e-81
Identity = 125/181 (69.06%), Postives = 147/181 (81.22%), Query Frame = 1 
Query:  208 YTGACFVVKDNIDTDQIIPAEYLTLVPSEADEYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAPIAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVTVDLT-TDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLD 747
            + G C+VV DNIDTDQIIPAEYLTLVPS+ DEYEKLGSYA+IGLP +Y TR++E G+  TKY I+IAGDNFGCGSSREHAP+A+GA+G   VVAESYARIFFRNS+ATGE+YP E + RL +   TGDVVTV+L+  D  + N T GK+Y LKP+GDAGPVI AGG+F YA KTGMI   D
Sbjct:   67 FHGDCYVVGDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYALIGLPSSYRTRFIEPGAAKTKYSIVIAGDNFGCGSSREHAPVALGASGVAAVVAESYARIFFRNSVATGEVYPLESEARLCEECRTGDVVTVELSENDNKLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARKTGMISSRD 247
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPR9_9PHAE1.000e-13883.59Aconitase_C domain-containing protein n=2 Tax=Ecto... [more]
B7ZGN7_9PHAE4.140e-12777.203-isopropylmalate dehydratase (Fragment) n=1 Tax=L... [more]
A0A7N0U1F4_KALFE5.720e-8571.59Aconitase_C domain-containing protein n=2 Tax=Kala... [more]
A0A251VAI3_HELAN6.170e-8472.16Putative aconitase/3-isopropylmalate dehydratase p... [more]
UPI002009A4172.530e-8370.563-isopropylmalate dehydratase small subunit 1-like... [more]
A0A4D9BDJ2_SALSN8.270e-8371.113-isopropylmalate/(R)-2-methylmalate dehydratase s... [more]
A0A0A0KPB2_CUCSA1.570e-8166.67Aconitase_C domain-containing protein n=4 Tax=Beni... [more]
A0A7J7Q700_9CHLO2.070e-8171.43Small subunit of isopropylmalate dehydratase n=1 T... [more]
A0A251SVK6_HELAN2.140e-8171.02Putative hydrolyase LeuD/HacB/DmdB, Aconitase/isop... [more]
S8DSG1_9LAMI2.230e-8169.06Aconitase_C domain-containing protein n=1 Tax=Genl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:146232..152058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRK8
PFAMsAconitase_C
Model size753
Max annot lvl2759|Eukaryota
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01704,ko:K21359
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0003861,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006551,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009098,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009657,GO:0009658,GO:0009987,GO:0016043,GO:0016053,GO:0016143,GO:0016144,GO:0016829,GO:0016835,GO:0016836,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0048229,GO:0048856,GO:0050896,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901657,GO:1901659
Exons7
Evalue4.08e-142
EggNOG OGsCOG0065@1|root,KOG0454@2759|Eukaryota
Ec32 ortholog description3-isopropylmalate dehydratase
Ec32 orthologEc-12_000170.1
EC4.2.1.170,4.2.1.33,4.2.1.35
Description3-isopropylmalate dehydratase activity
Cds size753
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.34.1prot_P-littoralis_Contig201.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 146232..152058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.324049-CDS-P-littoralis_Contig201:146231..1463441680789987.324049-CDS-P-littoralis_Contig201:146231..146344Pylaiella littoralis U1_48CDSP-littoralis_Contig201 146232..146344 -
1680789987.3377514-CDS-P-littoralis_Contig201:147663..1477661680789987.3377514-CDS-P-littoralis_Contig201:147663..147766Pylaiella littoralis U1_48CDSP-littoralis_Contig201 147664..147766 -
1680789987.349621-CDS-P-littoralis_Contig201:148145..1482411680789987.349621-CDS-P-littoralis_Contig201:148145..148241Pylaiella littoralis U1_48CDSP-littoralis_Contig201 148146..148241 -
1680789987.3614845-CDS-P-littoralis_Contig201:148506..1485831680789987.3614845-CDS-P-littoralis_Contig201:148506..148583Pylaiella littoralis U1_48CDSP-littoralis_Contig201 148507..148583 -
1680789987.3723125-CDS-P-littoralis_Contig201:149113..1491831680789987.3723125-CDS-P-littoralis_Contig201:149113..149183Pylaiella littoralis U1_48CDSP-littoralis_Contig201 149114..149183 -
1680789987.3814626-CDS-P-littoralis_Contig201:151521..1517011680789987.3814626-CDS-P-littoralis_Contig201:151521..151701Pylaiella littoralis U1_48CDSP-littoralis_Contig201 151522..151701 -
1680789987.3917632-CDS-P-littoralis_Contig201:151944..1520581680789987.3917632-CDS-P-littoralis_Contig201:151944..152058Pylaiella littoralis U1_48CDSP-littoralis_Contig201 151945..152058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.34.1

>prot_P-littoralis_Contig201.34.1 ID=prot_P-littoralis_Contig201.34.1|Name=mRNA_P-littoralis_Contig201.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=251bp
MLSFATAVTLVAAASSRVSAFVVPVSTAGTVVSRAASQSGVAPRRATDAD
AAIDPRVKEMPRNRERPDKYTGACFVVKDNIDTDQIIPAEYLTLVPSEAD
EYEKLGSYAMIGLPDAYETRYVEEGSMSTKYPIMIAGDNFGCGSSREHAP
IAMGAAGTRVVVAESYARIFFRNSIATGELYPYECQERLVDLFTTGDVVT
VDLTTDTLINNTTAGKQYPLKPLGDAGPVINAGGLFPYAIKTGMIKKLDE
*
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mRNA from alignment at P-littoralis_Contig201:146232..152058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.34.1 ID=mRNA_P-littoralis_Contig201.34.1|Name=mRNA_P-littoralis_Contig201.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5827bp|location=Sequence derived from alignment at P-littoralis_Contig201:146232..152058- (Pylaiella littoralis U1_48)
ATGTTGTCCTTTGCAACGGCAGTAACGCTGGTTGCGGCAGCGTCATCAAG
AGTCTCGGCTTTTGTGGTGCCAGTCTCCACGGCGGGGACTGTCGTGTCCC
GAGCTGCTTCCCAGGTGTGAAGATAATCATGTGTCTCTCTCTCCCTCTCT
TGTGGCGTACAGCGGTATAACGTGTTGGAAGCAACAGCAACCGCACGTGG
ATGCACTACCGGTCAACAGCAGCTGCTATCATGTGTGTCCGCATTGATGG
GCGAAGCAGGCTATCGGGTGTGTACCACGACGACCTCTTTCCAAGCGACT
TTTTTCTACATTTTTTCACCTATCGTTGTACTGCTGATTCCGCTCACTCG
AACACAGTCCGGCGTGGCACCTCGACGGGCGACCGATGCAGACGCAGCGA
TCGACCCTCGCGTGAAGGAGATGCCGCGGAACAGAGAAAGGCCGGACAAG
TACACGGGGGCTTGCTTTGTGGTGAAGGACAACATCGATACCGACCAGAT
CATCCCGGCAGAGTACCTCACCCTCGTGCCGTCAGAGGTATGCCTGGACA
TCTACTCAAAGAGTGTGTTCCAAAGCTATCCACATGCTGTCGGTACGTTA
TCAAGATCTGTAAATCTGTGTACCAGCCTCCCATCTCGACTCGTATCGAT
GAGCAGCAGTCAGAAAGTTGAGCGAGGGCCAACGGCATAGAGTATTGCCC
CGTCACTTTTTTTTGGACCCGGGTACCCGTCTGGCCTCGGGAATTGTTGG
ACCTGGGTACCCGGGTACCCGAGGTAGTCATTACCCGCGGGTACCCGAGT
ACCCGGGTACCCGGGTGGTCATCCATCATTATCAGCCTGTCGACTAATTC
AGCGGCACGCCAAGGTGGAAAGCGCCACAGGGCATGAGTCGGGTTCGTCT
TTCGGCCCTTCATGAGTGTGTGCGTGCATGTTGCATACATTCTGAGCACC
AGTCTTCACTCTTCGGTATGAAGTGGATGCACCAGCCAGGGTCACACAGC
AGTAAAGAGTAGAGGTTAGAGACTACCTGGTACACGTTAATCTATCAACT
CATCATGTTGTCATGATCTCACGTCACGTGATCACGTCTTGTATCCATGC
CATCATTTATTTTTATTTGAATATTATCGGTTCGGGGGCATTGTTGTTTT
CCTGAAAAGGAAGCCTGGTACAAGCTCGAAGAACAAATCACGACATCGGC
ACAAAAAAACGCTGCAGCGGGCCACGCAAAACAAAACATGCCCACATGCC
CACCCTGTTACACTGTTTTCCCGCTGTCAAAAAAAACTACACAGCAGTGC
TGTTGAAAACCACCATGGGCAACCACTCTCCATCCACAAGTATACTTCCC
CTCCTCCAACACGTCCAAAGATCCCTCGGCAAAGTCACCTCCACGCGCTG
CGCCCACTACTTCAGACCAAGACCATGAGCATCCATTCAGTAGGCACCAC
TTAAGCAGCACCAGGTGCCCATCGCCTGCTGCTTGCTTACAGATGTCCGT
ACTCCAGCGGTAGCCTTTATCTCGCAAACCCTGAACAACGTCCAAATGCC
CCCCCTGCGCAGCCGCGCCCGTTATCGAATCGGAATATCCCCACCCCCGT
GTTCCAAACACCAGACCACTGAATCCCAAACCCTAGTCATGCACCCTGTA
CCCGATGATGCCGGGATGTGTGCTGTATGCTGTGCGCTGCGGCGTTTAGG
GGCGTTCAGGGGGCGCCGTATCAAAACGTACCTACACGGGTACCCGGGTA
CACGGGTACCCGGGTACCCGGGTACCTGATTCCCAATTACCCGCGGGTCC
GAGATTGCTACCCGGACCCGATCGGGTAATTCATTACCCGGGTACCCGAG
GTCGGGTACCCGGGTAATGTTTAGACGGGGCAATACTCTACGACGGCAGC
GGTTCAAGTACAGCAGTACAAGCCAGTAGTACCCGTTCTGTCTTCAAGAG
CAGGAGCTGGAAATGGTGCAGTTTTGACGGAAACACTGGGCCGTATGTAT
GCCCATGCTAACCTCGAGGCAGGTACACCCAAAGCAGTGCTGCTGTTTAT
CGTTTGCCCGTATAGCGAGGACACCGCCTTACACTACCGGTACTTCGAGT
ACTCCTGTACGAGTACTGCTGTACGCATTTACTTGCGAACGCATACGTTG
GCATGACGTGTGTTGAACATGTGCAGACCCCACAGGCATTGCGTTTGAGC
GTTTGAGTCCCGCGATGCTGCTCCAGTACAGCACCACACTACAGTACCCG
TAGGACGCGAGAAAACTTCGGTAAACACGAGCACAATCGTGGTGGCACTG
CTGTATCCTACAACAGCAGTAGCTGCAAACAGGTGCTTGTCATTTTTTTA
TCGAAACGAGAGAGGGGGGGGGGGGAGGGAGGGAGTAAGATAAATGATAG
ATACGAAGAACCTGGTAGTTTACATACCGGTACAGCTGTAAAAGCACGAA
AATGCGCCAGCAGTTTCGGGCAGTACTTGGCACGAAACACCCCTCTGTCG
CAAGAGGAAATTCGGGAAAGCAGGGGCTGGTCAGGTTGTCCTCACGTTTT
CATACTGCTGCAGGCGTGCTCCCCTCATAACGTTGCAGCACTCCGCAAAT
ATTACGGTAGCGTCCCGGGTAGCCTTCGCTAGAACAACCGTGGAGTAACG
CACCCCTTTCCTCCACCCTACCCCACCTCTCCTCTCGTGACTTGCATTGT
GAATTCACCCCCCTCCTTGTAAAGCTTAATTCATTCAGACCTGGCTCGGC
TTCACAACGAATACCCATGTCGTGCCACCTCCTCTATCACACTATGTCCC
GTTGTTGGGATATTCCTGGCGAAGCACGTCTCTGATTTTATCTCTGCTCT
GGCTTACTGCTGCTGTGCTGTGCAGGCCGATGAGTACGAGAAGTTGGGAT
CATATGCAATGATCGGGCTTCCCGATGCATACGAGACCCGCTACGGTGAG
CTAGTTGCTCCGTCCCTCAAGTGTGGACGAGTATCAGTGAAAGATGAGCC
CACAAATTTGGGAGAGAAAAAAAATACTTCAAAGTACTTTGTACAACCCT
GAGTTTTGTGAACTAATTTTTGATGCTGGCGATTGCACAGCAGGAGTTTT
TTTCAGCTCGCTGCCGGCTGATCACGGCGTGTAGTAGCCATGGTTTGATG
TATACCCCTCGGATGGATAACTACAGATTTTTGTTCGAAAATATTCGGGC
GTTGAGGGGCCGAGCTGCGCGGGAGTGTTTTACGCGTTCCCTCTGGTGAC
ATCGGGCTTGCTGAATGAAGCTTCCCGTACGACACGCCGGATAAAACGAA
CACGTCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGTAGCAGCACTCAACAAAAACAGCAGTACTCGACTCT
CCCCGTGTCATCATTCCGACGAATCGCGGCGGCTCCCTTGTGCCTATATT
TTGTTTTCTTGTGGCAATACAACAGTGGAGGAGGGGTCCATGTCGACCAA
GTACCCCATCATGATCGCTGGGGACAACTTCGGCTGCGGTTCTTCGCGAG
AGGTGACTTTTGCCTCATCATAGTTTCTATTTTACGTTTGATGCATGGTT
TTCATACGCTTCCAATGCCACATCCAAAAAACGTTGAAAATGGTACGCCG
CCGCCACCCCTTGCAAACTGTAGACTGTCTTTGTCTTCGATGGATTCTCA
TCTCGTGGCATGTTCTTCTTCCATCATATCATAACACTATTCACCTTCGT
TACCATAAAGCCCACAACCCTTGGATTGGGATATTGGATCGCATCTCATC
TCGCGTTTCGCACGCAGCACGCACCGATCGCTATGGGGGCGGCGGGAACT
CGGGTTGTGGTGGCGGAGTCGTACGCAAGAATCTTCTTCCGGAATTCTAT
CGCCACGGGAGAGGTGAGCACGCCCCCTCCCTCTCTCCGTGTCAGAGGTC
CCGGAGCTTGAGACAGTTTTCGCGGCCAGGGAATCCGAGAACGAGCCAGC
GTTTCGGCTGCGCGAATGAATACGAGAGCTTTTGCAGCAGCAGTTGCCGG
TTGGTTTTTTTCCCGGACGAGATAGTGCTTCAATTGGCTGCGAAAAAAGT
GTTTATAGTCACGGATACGTACTGCGAAATGCTTACTCGACGTTCGTTTT
CGTGCACATTGGATGCTATGTGGCTGTTTACCAGCTTCCGGTCCCCCATA
CACGAATAATGCCTACCGTGATCCACGGGTTTGTTCGTCTCTACATCGAC
TGGTGCGCGTGTCTCCACGCCTTTGTCTTGTTTACGCTGTAGCTATACCC
TTACGAGTGCCAAGAGCGACTGGTGGATCTCTTCACCACCGGAGATGTCG
TCACGGTGGACCTCACAACGGACACTTTGATCAATAACACTACAGGTGAG
TCCGTACATCAAATCAAAAGTTGAAAGTTGCCGTACAGACCTCTTATACG
TGTCTTGAAGTTGTTCCACCGGCTGTTGCCCGTTGTGTGTTCATCACCGA
TAGTCACATGGTGCACGGTGAGTCAATCAATGAGGAACCGCTCTCAGTTA
ATACAACTTCTTGTTGGTGCACTTTTGTTTCTTCCGCCGCCTGGCATTTT
CATTTTTGACATGTTCAATAAACGCGCTGGCCAACACTACATGCCATACC
GGTGGCGTTATTCCATGGTTCGATGTTGGTGATGTTCACAAATCGTGCGG
TCAGTGTACCAAATAAATCGGTAGGCGCAACCGCCTGAACGCGTTGGATA
AATTTGCCACGTGGTGCTGGGGACAGTGAAATAGATATTGTTCAGGCATT
AAGGCAACCTCAATCAAGTAAGGCTTGTGTACGAGCTGTCGGTAAGTACT
CACACGGTAGATGTCCTTGCTTTCAATTTGACATCACTCAAGAACAAAGA
CGGCTCGTAGTAATCGTAACATTCCCAGTCGAGTGAGGTGTGCCATCATG
CCTTTCTTTCTTAGTGCTCCGACCTGACCTGAATCAGTTATTTCGTCTTG
AGTTATCTTCGACAAGGCCTGATCTATATAGAGATGGAAGGAGGTTCCCT
GTTTTTGACAGGATTTACAAGAGTCAACGTGTGGCTATGGTGGGTGATTC
TTGATGCCCAAAACACTACACATGGCTAATAACGAAGTCTGTACGTATGG
CACGGAGAGGGATGTGCGGGTTAAGCCGAAAGCAAAGAAAAGGACTGTTT
GGAAGCGTTGGAAGCGTTGCTTCCCATTGCAGGGTGCGAAATCATGGGTA
TCTGGCCGAATGAGGCTCGAATGCTCGAATGCTTTCGCAAATACCCTGCT
GGGAGTGCTGGTGACAGCTGCAACCTCCGTCTGTCGGCAGTCGGGGTTCC
AGGTAAAGTGGGAGGCAGACTCGAGCGCCGACGTGTGTACTGCAGCAGAA
CTCTGAAGAAAACGGTAACGTCAAACCTCAACAGTACGTTGTCGTGGTTT
TTGGACCTCTCGACTGTTTCGCCGTTATCGCACAGTTAGCCCACCGGCTG
ACCCAATTCGTCGACCCTTTGCACACGCGCAGCAAGGGCTACAGCAACAT
ATCATAACTCGCCGCACGATGTTCTTTTGACTTTGAAATCTGCCTCTCAC
TCAAGTACAACAGCACTCATGGATGCCCCCCCTCCCCCCCCCCCCACCTC
TCCCGTCGTACCATTGACTTCCAAATTCGTTTGATTCACGTGTCCACGCG
GAAAAAAATTGGAGCAGGCAAGCAGTACCCACTGAAGCCCCTTGGGGACG
CTGGGCCGGTCATCAACGCCGGAGGCTTGTTTCCCTACGCCATTAAGACT
GGCATGATAAAAAAGCTGGACGAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:146232..152058-

>mRNA_P-littoralis_Contig201.34.1 ID=mRNA_P-littoralis_Contig201.34.1|Name=mRNA_P-littoralis_Contig201.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig201:146232..152058- (Pylaiella littoralis U1_48)
ATGTTGTCCTTTGCAACGGCAGTAACGCTGGTTGCGGCAGCGTCATCAAG
AGTCTCGGCTTTTGTGGTGCCAGTCTCCACGGCGGGGACTGTCGTGTCCC
GAGCTGCTTCCCAGTCCGGCGTGGCACCTCGACGGGCGACCGATGCAGAC
GCAGCGATCGACCCTCGCGTGAAGGAGATGCCGCGGAACAGAGAAAGGCC
GGACAAGTACACGGGGGCTTGCTTTGTGGTGAAGGACAACATCGATACCG
ACCAGATCATCCCGGCAGAGTACCTCACCCTCGTGCCGTCAGAGGCCGAT
GAGTACGAGAAGTTGGGATCATATGCAATGATCGGGCTTCCCGATGCATA
CGAGACCCGCTACGTGGAGGAGGGGTCCATGTCGACCAAGTACCCCATCA
TGATCGCTGGGGACAACTTCGGCTGCGGTTCTTCGCGAGAGCACGCACCG
ATCGCTATGGGGGCGGCGGGAACTCGGGTTGTGGTGGCGGAGTCGTACGC
AAGAATCTTCTTCCGGAATTCTATCGCCACGGGAGAGCTATACCCTTACG
AGTGCCAAGAGCGACTGGTGGATCTCTTCACCACCGGAGATGTCGTCACG
GTGGACCTCACAACGGACACTTTGATCAATAACACTACAGCAGGCAAGCA
GTACCCACTGAAGCCCCTTGGGGACGCTGGGCCGGTCATCAACGCCGGAG
GCTTGTTTCCCTACGCCATTAAGACTGGCATGATAAAAAAGCTGGACGAA
TGA
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