mRNA_P-littoralis_Contig201.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.24.1
Unique NamemRNA_P-littoralis_Contig201.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig201.24.1 vs. uniprot
Match: D8LRK5_ECTSI (Yae1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK5_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 6.660e-25
Identity = 133/242 (54.96%), Postives = 145/242 (59.92%), Query Frame = 1 
Query:   61 MEDKNPEEFGEDGVDEFFGDGVEEEEEGRTSSTMADRELAALRERLTTLGYQDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXLLYGXXXXXXXXXAASHERLAEVGGEGMTFPDKADVTTRTGDEPKKLSVGLAVDSRTSVEGGGGDSAATTTLPGATSTLWFH----------EQLVE----SDGKKAVGVVKGLQGLVEELKRASLSGPDGPGAPDRADVLRRLRLAGPAGAAVADGLDK 744
            ME+K PE FG DGVDEFFGD VEEE E   S  MADRELAAL+ RLTTLGYQDGV XXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXX      + A  GG+      + D  T  G     L +  A  S TS   G   SAA     GA+                 Q VE    +    A G  + LQ LV EL+RASL GPDGPG PDRA+VLRRLR    AG AVADGLD+
Sbjct:    1 MEEKRPEIFGVDGVDEFFGDDVEEERE--QSRDMADRELAALQARLTTLGYQDGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-----KQAARGGQST----EKDAGTVGG-----LRLETAAGSSTS---GAALSAAPLGSTGASEIAGXXXXXXXXXXAVSQPVEGYRNTKTSPAAGTAEDLQRLVGELRRASLLGPDGPGVPDRAEVLRRLRXXXXAGVAVADGLDE 223
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BLAST of mRNA_P-littoralis_Contig201.24.1 vs. uniprot
Match: A0A6H5JF48_9PHAE (Yae1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF48_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.790e-12
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  583 AVGVVKGLQGLVEELKRASLSGPDGPGAPDRADVLRRLRLAGPAGAAVADGLDK 744
            AVG  + LQ LV EL+RASL GPDGPG PDRA+VLRRLRL   AG AVADGLD+
Sbjct:  112 AVGTAEDLQRLVGELRRASLLGPDGPGVPDRAEVLRRLRLXXXAGVAVADGLDE 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRK5_ECTSI6.660e-2554.96Yae1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JF48_9PHAE1.790e-1272.22Yae1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:113790..116571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1147
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEssential protein Yae1, N-terminal
Ec32 orthologEc-12_000140.1
Cds size714
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.0112815-UTR-P-littoralis_Contig201:113789..1141621680789987.0112815-UTR-P-littoralis_Contig201:113789..114162Pylaiella littoralis U1_48UTRP-littoralis_Contig201 113790..114162 -
1680789987.041389-UTR-P-littoralis_Contig201:116511..1165711680789987.041389-UTR-P-littoralis_Contig201:116511..116571Pylaiella littoralis U1_48UTRP-littoralis_Contig201 116512..116571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.023189-CDS-P-littoralis_Contig201:114162..1147661680789987.023189-CDS-P-littoralis_Contig201:114162..114766Pylaiella littoralis U1_48CDSP-littoralis_Contig201 114163..114766 -
1680789987.0323586-CDS-P-littoralis_Contig201:116401..1165111680789987.0323586-CDS-P-littoralis_Contig201:116401..116511Pylaiella littoralis U1_48CDSP-littoralis_Contig201 116402..116511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.24.1prot_P-littoralis_Contig201.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 114163..116511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.24.1

>prot_P-littoralis_Contig201.24.1 ID=prot_P-littoralis_Contig201.24.1|Name=mRNA_P-littoralis_Contig201.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MEDKNPEEFGEDGVDEFFGDGVEEEEEGRTSSTMADRELAALRERLTTLG
YQDGVEDGVQKAVQEGFDQGYAAGAVAGWNAGLLYGGAAAAAAALAASHE
RLAEVGGEGMTFPDKADVTTRTGDEPKKLSVGLAVDSRTSVEGGGGDSAA
TTTLPGATSTLWFHEQLVESDGKKAVGVVKGLQGLVEELKRASLSGPDGP
GAPDRADVLRRLRLAGPAGAAVADGLDKRSPTGGGHC*
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mRNA from alignment at P-littoralis_Contig201:113790..116571-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.24.1 ID=mRNA_P-littoralis_Contig201.24.1|Name=mRNA_P-littoralis_Contig201.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2782bp|location=Sequence derived from alignment at P-littoralis_Contig201:113790..116571- (Pylaiella littoralis U1_48)
TGGGTGCGCCCAGCATGATGGTTCGCGGCGGCGGTGGTACACCACACCAG
TGTTCACAGCATGGAAGATAAGAATCCGGAAGAGTTCGGAGAGGATGGGG
TGGACGAGTTCTTCGGTGATGGTGTGGAAGAAGAAGAAGAAGGAAGAACA
TCCAGTACGATGGCTGACAGGTGCGTGTCCAACTTGCAATATGTAAAAAT
TTGCAACATTTGAACTCACCAAATCCCCATGAACAGCTTGCCGTCAATAC
CGCTCCTGTGCTGCTCTACTCCACAAAAGGAGTAGTCCCTGTACTCAAAA
GAGATTGGAGAATATCACCTACTGCTGTTGTGTGCGCAGTCATTATTTGC
CCACGTACACTGCAGCTCGCAACTACTCTATTATTTCGGTATCCATGTGA
CTCTGTTGTATCAATACTACTACATCATGCATCGCTCTTTCCAAACACAG
CAGTGGGGGTCCCGATATAGTGCGGTGGTGTGATCTGTTGATGTCGGTCC
TGGTGTAGTGCGGTCGGACCGCACCAAATGGGGTCGTTGTCGTTTTGGTC
CCTATGTAGTGCGGTGACCGCACCATACAGGTGATATCCCTGTATAGTGC
GGTCACCGCACTAAAAACGGGCCTGTGTCATGACAAGACATTTTTACCGA
ACTATATCGGGGCCACGCACTATATGGGACCGCACTATATCGGGACCCCA
CTGCAGCCCCATGCAGTTTCCAGCTTAGGCCCAATCTTATGGTAGATGGG
CAGCTGGAATTTCTCGACTTGGAAAAGCATTTTCCAAGCCTGATATTCCA
AGTCGGACAATCAGACTGGTGCCAACTTTATGGGAGAACTGGAAAATTTG
GGCAGCGATTGGAAATCAGATGGGGTTGCCGGATGGACGGCAGGCGGTTT
GGGCTATTTTCGATAAACTGCTGCTGATGGCGCAGAGCGGCGAGCGTTAT
CGCCAGCACGGCCAGGATTGCAAGTCGCTTTGGTACCTGCACCTGGCCAG
TGTGTTTGTGTGCTCGGTTGTTTGTATTTGTGCTTGTTGCGTGCTGTGAA
CTACTGCGGCGGAACCTCGTGGCTGCGCGCGACGGATTCCAGGCCTGGAA
TCCAGGTCATTTGGCCTGGAATCCGAGGGCATATTCCAGGCGAGTCGCCT
GGAATCCGCAGAACTGGAAAATATTTTCCAGTTTCGGCCGAAAACAACCC
CCATAAGATAGAAATATTTTCCAGGCCTGGAATTTGTATTCCAGTTTCTC
ATGTGAAACCCTTGGATTCCAGTTTTCGGCTCTACCATAAGAGTGGGCCT
TACCAGTGTGTGTGCTCTGGTGGTGGGCCTGTCCATCCCATGAGGACGGT
ACCGTTCCTTGTGTCCACAACACGTGGAACTTCCTCTCTCAGGAACATGA
GGACCTTTTGCGTACAGATAGTCGTCCGGTACGTGTCTGTGGGTGATATT
ATCAACAAAAGTTGCGATGGGCACTGCTCCAGGGAGCAATTGCGGAGTCA
GTCCACTAAGCAGGCTCTCCTTCGTGATCGACAATTCCGAAGTTTCGAAA
TGCCGACCGATCAGCTGCTACAGGTACAGCTGCAAGTGGTCTAGAGATGG
GGGGGCGCAGGCGCAGGACACAGTCATGATCAGGGAGAAAGAGGAACCCG
ACGCGTGGCCCTCTGCCACATTCACGCTGTTTTATTTTCTCACCGATGTG
CGAACACGAACACGACCAACTCTCAACTCTCCCCCCCCCCCCCATGCCAC
CGTGCGTACACTGCTGTACCGCCCCCATTTCACTCGCGGTGCACTCTCAA
AACAGAGAGTTAGCAGCGCTCCGAGAACGTCTCACAACCCTCGGCTATCA
GGACGGCGTGGAGGACGGTGTGCAGAAGGCCGTGCAAGAGGGCTTTGACC
AGGGCTATGCGGCGGGGGCGGTAGCGGGATGGAATGCTGGCTTGCTCTAC
GGCGGCGCAGCTGCCGCGGCAGCGGCTCTTGCGGCCAGTCATGAACGGCT
GGCGGAGGTCGGGGGAGAAGGAATGACATTTCCTGATAAGGCGGATGTGA
CCACTCGGACAGGAGACGAACCCAAGAAGTTGTCAGTAGGGCTGGCGGTG
GACAGTAGAACCAGCGTGGAGGGTGGTGGAGGCGATAGCGCCGCGACTAC
AACCTTACCGGGGGCAACATCCACTCTCTGGTTTCACGAACAATTAGTAG
AAAGCGACGGGAAGAAGGCGGTGGGAGTAGTGAAAGGTTTGCAGGGGTTA
GTGGAGGAGCTCAAGCGCGCCAGTCTTTCGGGGCCGGACGGTCCTGGCGC
GCCGGACAGGGCGGACGTCCTGCGAAGGCTTAGATTAGCTGGCCCCGCCG
GAGCGGCGGTTGCTGACGGCTTGGATAAACGTAGCCCCACAGGAGGTGGG
CATTGTTGATTCCATCAACTCGTGCCGTTTGCTGTACAGCCTGTAGAAAG
ACAAAAGAGCGCGAGTTATTTATGACAGCTTGCGTGTTTGTACAGCGGTC
GAATCGGCCTTCTTCACAGGAGTTTGTGCGGTGTGTATTGGGAATTTTGC
GTCTTGTACCGACGGTTTTTAGCCACACCAAAGTGTTCGGAATGTTCCGT
CGGTGTTGTTTCGTCACACCACCGCATGAGCGCTGACAATATTTTATCGA
CGGAACATGAACCAGTGGTGTATGCTTTTTGCATTTATTCGTAATAACCT
TGTAGATATTCTACCCATGACAAAAAAAAACTTTTTGCTGTTCTAATGAC
GTCGGTCATTCGTCCTGTTCAGGTATATGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:113790..116571-

>mRNA_P-littoralis_Contig201.24.1 ID=mRNA_P-littoralis_Contig201.24.1|Name=mRNA_P-littoralis_Contig201.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig201:113790..116571- (Pylaiella littoralis U1_48)
ATGGAAGATAAGAATCCGGAAGAGTTCGGAGAGGATGGGGTGGACGAGTT
CTTCGGTGATGGTGTGGAAGAAGAAGAAGAAGGAAGAACATCCAGTACGA
TGGCTGACAGAGAGTTAGCAGCGCTCCGAGAACGTCTCACAACCCTCGGC
TATCAGGACGGCGTGGAGGACGGTGTGCAGAAGGCCGTGCAAGAGGGCTT
TGACCAGGGCTATGCGGCGGGGGCGGTAGCGGGATGGAATGCTGGCTTGC
TCTACGGCGGCGCAGCTGCCGCGGCAGCGGCTCTTGCGGCCAGTCATGAA
CGGCTGGCGGAGGTCGGGGGAGAAGGAATGACATTTCCTGATAAGGCGGA
TGTGACCACTCGGACAGGAGACGAACCCAAGAAGTTGTCAGTAGGGCTGG
CGGTGGACAGTAGAACCAGCGTGGAGGGTGGTGGAGGCGATAGCGCCGCG
ACTACAACCTTACCGGGGGCAACATCCACTCTCTGGTTTCACGAACAATT
AGTAGAAAGCGACGGGAAGAAGGCGGTGGGAGTAGTGAAAGGTTTGCAGG
GGTTAGTGGAGGAGCTCAAGCGCGCCAGTCTTTCGGGGCCGGACGGTCCT
GGCGCGCCGGACAGGGCGGACGTCCTGCGAAGGCTTAGATTAGCTGGCCC
CGCCGGAGCGGCGGTTGCTGACGGCTTGGATAAACGTAGCCCCACAGGAG
GTGGGCATTGTTGA
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