mRNA_P-littoralis_Contig201.21.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: D8LRK4_ECTSI (ER membrane protein complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK4_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.700e-101 Identity = 149/169 (88.17%), Postives = 158/169 (93.49%), Query Frame = 2
Query: 62 MESPIRSWRFDLNPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
M P R+WRFDLNPGPG+ PK+LA+PLGFNPG LI DDD +GPSALAQENLKKKRAMEIA+GPGK++LMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAIL VH VFRTVDDGK SLLLPKLIFCA+NF GVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL
Sbjct: 1 MAPPERTWRFDLNPGPGEAPKSLARPLGFNPGALIDDDDATGPSALAQENLKKKRAMEIALGPGKSILMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILSVHSVFRTVDDGKISLLLPKLIFCAVNFGGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 169
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A6H5JF63_9PHAE (ER membrane protein complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF63_9PHAE) HSP 1 Score: 202 bits (513), Expect = 5.630e-60 Identity = 106/150 (70.67%), Postives = 110/150 (73.33%), Query Frame = 2
Query: 230 MEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHG-------------------------------------VFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
MEIA+GPGKT+LMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVH VFRTVDDGK SLL+PKL+FCALNF GVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL
Sbjct: 1 MEIALGPGKTILMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHNGMPSSTILRTIPAMPTAHAPAQPAMSSPCPRFPQTYAVFRTVDDGKISLLMPKLLFCALNFGGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 150
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A7S2FYU7_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYU7_9STRA) HSP 1 Score: 167 bits (422), Expect = 3.890e-46 Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 2
Query: 71 PIRSWRFDLNPGPGD--VPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
P +WRFDL P D + + PLG++PG I + + + K AM IA GPGK ++MNGFMMYMSG+ I+IFSIMIT MG+ NP AI+ V+ F VDDG + +PKLIFCALN +CVALWK MGLLPVT+ADWTSYL+ K E SG+P+
Sbjct: 7 PDGAWRFDLVPTEADHKILRECEGPLGYDPGA-IEEKETEEKKQGSLSKRKAAMAMNIATGPGKQIMMNGFMMYMSGSQINIFSIMITAMGLWNPINAIVNVNKAFVKVDDGSHDCTMPKLIFCALNLLSLCVALWKCKAMGLLPVTSADWTSYLIEKTNDEMSGIPI 173
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A7S2DUV1_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUV1_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.180e-43 Identity = 80/166 (48.19%), Postives = 107/166 (64.46%), Query Frame = 2
Query: 77 RSWRFDLNPGPGD--VPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
+ W DL P P + + + PLGF+ L+ + D +G + LK K AM+IA PGK +LMNGFMMYM+G+ I+IFSIM+ M + NP AI G++ F VDDG L++PKLIF LN +CV LWK +MGLLP+T+ADWTSYL+ K + SGVP+
Sbjct: 7 KRWTVDLVPNPSEHAIIREAVNPLGFDLNALV-EVDAAGKKEKDLKGLKTKMAMDIATAPGKNILMNGFMMYMTGSYINIFSIMMLSMSLWNPLNAIAGINKAFTKVDDGTVDLIMPKLIFFCLNVLSLCVGLWKCGRMGLLPITSADWTSYLLTKVDVSSSGVPI 171
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A7S2SV60_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV60_9STRA) HSP 1 Score: 151 bits (382), Expect = 3.330e-40 Identity = 83/169 (49.11%), Postives = 105/169 (62.13%), Query Frame = 2
Query: 65 ESPIRSWRFDLNPGPGD--VPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVP 565
E R+W F L+ G D + K + PLG+ + D + A + LK K A +A PGK +LMNGFMMYMSG+ I+IFSIMIT MGI P AI G++ FR V+DG L +PKLIF ALN + VA+WK MGLLP+TAADWT YLV K +E +G+P
Sbjct: 9 EKKRRAWAFHLSRGGNDHELAKRIEAPLGYVVNYVPDKDVSTKTKADNRAALKSKIAFNMATAPGKQILMNGFMMYMSGSQINIFSIMITTMGIWTPINAIAGINKHFRRVEDGNVDLTMPKLIFFALNILSLGVAMWKCKAMGLLPITAADWTGYLVDKEMLEVTGIP 177
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A835Z218_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z218_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.860e-37 Identity = 78/164 (47.56%), Postives = 107/164 (65.24%), Query Frame = 2
Query: 77 RSWRFDLNPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
R W+FDL P P + KP GF G +L S+ AQ +K +RAM++A PG+++ MNGFMMYM+G+ I+IFSIMIT M + + A ++ V+ F ++DDGK L+ PK I+ ALN AG+ +AL+K+ +GLLPVT+ADWTS L K E SG PL
Sbjct: 6 RRWQFDLRSTP---PGGIPKPPGFTMGASA-SRELETRSSAAQLAMKNQRAMQVARMPGQSLFMNGFMMYMAGSSINIFSIMITGMVLSSAATGLMNVNKAFASLDDGKVKLMTPKAIYFALNVAGLALALYKLTSLGLLPVTSADWTSRLPLKALAEHSGAPL 165
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A5D6XRF1_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRF1_9STRA) HSP 1 Score: 135 bits (341), Expect = 3.020e-34 Identity = 77/161 (47.83%), Postives = 105/161 (65.22%), Query Frame = 2
Query: 83 WRFDLNPG-PGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQE--NLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQS 556
WR +LN D+P L +P+GF G + ++ S + A +LKKKRAMEI M P K+++ GFMM+MSG+ ++IFSIM+T M IMN K++L + G F +V+DG L+ PKL++ A N A V +A++K A MGLLP TAADWT L K AIE S
Sbjct: 15 WRVELNEARESDLPSRL-EPIGFTRGFVAEKENNSAVAKTASNTLDLKKKRAMEIGMAPFKSLMQTGFMMWMSGSSVNIFSIMVTGMIIMNTFKSLLNLQGAFVSVNDGVVDLVQPKLVYVAGNLANVAMAVYKCANMGLLPTTAADWTWLLPIKQAIETS 174
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A6G0XHH2_9STRA (ER membrane protein complex subunit 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHH2_9STRA) HSP 1 Score: 134 bits (338), Expect = 5.130e-34 Identity = 76/161 (47.20%), Postives = 98/161 (60.87%), Query Frame = 2
Query: 74 IRSWRFDLNPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQENLKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQS 556
+R W ++LN + P LA PLG+N + ++ ++ SA LK+KRA EIA P K +L GFMM+MSG+ I+IFSIMIT M I NP KA+ V+G F ++DGK LL K F N + VAL+K MGLLP T+ADWT L K AIE S
Sbjct: 2 VRKWTYNLN---ANTP--LADPLGYNKHVVDVNSAVTTTSANDTLELKQKRASEIANAPFKGLLQTGFMMWMSGSSINIFSIMITAMAIFNPLKALFNVNGAFVGLEDGKTDLLQAKATFVIANLVAISVALYKCGTMGLLPTTSADWTWLLPVKQAIESS 157
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A1V9ZF01_9STRA (ER membrane protein complex subunit 4 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZF01_9STRA) HSP 1 Score: 134 bits (336), Expect = 9.980e-34 Identity = 77/163 (47.24%), Postives = 97/163 (59.51%), Query Frame = 2
Query: 77 RSWRFDLNPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQEN---LKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQS 556
R W +DLN G +PLG N T D+ +A +N LKKKRA E+A P K + GFMM+MSG+ I+IFSIMIT M +NP KA+ ++G F +DDGK LL KLIF A NF + VAL+K MGLLP T++DWT L K A+E S
Sbjct: 3 RKWAYDLNAG------NAPEPLGSNKHTF--DEPSGAVTAKGGDNTLELKKKRANEVATAPFKGLFQTGFMMWMSGSSINIFSIMITAMAFVNPVKALFNINGAFAALDDGKLDLLQFKLIFVASNFVAIGVALYKCGTMGLLPTTSSDWTWLLPVKEAVEAS 157
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Match: A0A6V1SRW4_HETAK (ER membrane protein complex subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SRW4_HETAK) HSP 1 Score: 132 bits (332), Expect = 5.050e-33 Identity = 77/167 (46.11%), Postives = 95/167 (56.89%), Query Frame = 2
Query: 77 RSWRFDL--NPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQEN-LKKKRAMEIAMGPGKTVLMNGFMMYMSGAGIHIFSIMITFMGIMNPAKAILGVHGVFRTVDDGKNSLLLPKLIFCALNFAGVCVALWKMAKMGLLPVTAADWTSYLVPKHAIEQSGVPL 568
R W +DL N + K + P G LD+ A+E LK KRA E AM P K + M GFMM+MSG I+IFSIM+T M +NP KAI+G+ F +DG L +PKL F A+N GV ++K A MGLLP TAADW YL K +E SGVPL
Sbjct: 5 RRWAYDLTLNSTEKNALKDIPDPPGLLKSAGELDEMKGKMRDTAKEKELKMKRAQEFAMAPFKNIAMQGFMMWMSGKQINIFSIMMTAMAFLNPIKAIMGIDQAFARFNDGTLDLTVPKLTFVAVNLLGVGTGVYKCATMGLLPTTAADWQGYLAAKVPLEHSGVPL 171 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig201.21.1 >prot_P-littoralis_Contig201.21.1 ID=prot_P-littoralis_Contig201.21.1|Name=mRNA_P-littoralis_Contig201.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp MESPIRSWRFDLNPGPGDVPKTLAKPLGFNPGTLILDDDLSGPSALAQENback to top mRNA from alignment at P-littoralis_Contig201:110644..113841+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig201.21.1 ID=mRNA_P-littoralis_Contig201.21.1|Name=mRNA_P-littoralis_Contig201.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3198bp|location=Sequence derived from alignment at P-littoralis_Contig201:110644..113841+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig201:110644..113841+ >mRNA_P-littoralis_Contig201.21.1 ID=mRNA_P-littoralis_Contig201.21.1|Name=mRNA_P-littoralis_Contig201.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig201:110644..113841+ (Pylaiella littoralis U1_48)back to top |