mRNA_P-littoralis_Contig201.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.14.2
Unique NamemRNA_P-littoralis_Contig201.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-16
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 2 
Query:  143 HFLQNFE-VGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 316
            HF++NF+    G F EM  RW KW D HQHLP SMARL CSSF+EGKWAGSEKA +  +
Sbjct:  481 HFMRNFQNEKSGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAV 539
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.780e-13
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  188 MEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 316
            M  RW  W D HQHLP SMARL CSSF+EGKWAGSEKAF+  +
Sbjct:    1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAV 43
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-11
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:  131 ASSRHFLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 316
            A ++ F+ NF    GFF E +QRWIKW +RHQ LPLSMAR+GC SF+       E A +Q +
Sbjct:  207 AMAKLFMTNFSEDKGFFAEFKQRWIKWMERHQQLPLSMARIGCPSFFARTGIMGEGAVEQAV 268
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.150e-9
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 2 
Query:  131 ASSRHFLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 316
            A  +HF+ NF     FF E   RW KW  RHQ LPLSMAR+GC SFY       + A +Q +
Sbjct:  158 AEKKHFMVNFSEDSFFFAEFNMRWKKWMQRHQELPLSMARIGCPSFYARMGIMGKGAVEQAV 219
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.520e-9
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 2 
Query:  107 RSTPSQINASSRHFLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFYEGKWAGSEKAFDQQI 316
            R  P    A+ + F  N     GFF   ++RWIKW +RHQ LPLSMAR+GC SFY      +E A +Q +
Sbjct:  113 RKDPETYFAAEKLFTTNCSEDKGFFALFKKRWIKWMERHQQLPLSMARIGCPSFYARTGIMAEGAVEQAV 182
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.510e-9
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:  146 FLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 271
            F+ NF     FF E+++RWIKW  RHQ LPLSMAR+GC SFY
Sbjct:  343 FMLNFSEDSFFFAEVKKRWIKWMQRHQELPLSMARIGCPSFY 384
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.860e-8
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 2 
Query:  146 FLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 271
            F+ NF     FF E ++RWIKW +RHQ LPLSMAR+ C SFY
Sbjct:  172 FMTNFSEDKVFFAEFKKRWIKWMERHQQLPLSMARIACPSFY 213
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5JMW8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 9.450e-8
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 2 
Query:  140 RHFLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 271
            + F+  F     FF E ++RWIKW  RHQ LPLSMAR+GC SFY
Sbjct:  136 KFFMLAFSEDRVFFAEFKKRWIKWMQRHQELPLSMARIGCPSFY 179
[Close]
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 6.500e-5
Identity = 23/42 (54.76%), Postives = 27/42 (64.29%), Query Frame = 2 
Query:  146 FLQNFEVGGGFFWEMEQRWIKWTDRHQHLPLSMARLGCSSFY 271
            F    + G  F  E ++RWIK   RHQ LPLSMAR+GC SFY
Sbjct:  213 FRVELQRGQFFIAEFKKRWIKSMQRHQELPLSMARIGCPSFY 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE1.340e-1662.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSZ3_9PHAE9.780e-1369.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI3.100e-1150.00Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KR45_9PHAE1.150e-946.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQF6_9PHAE1.520e-944.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH75_9PHAE4.510e-961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE1.860e-859.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMW8_9PHAE9.450e-856.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI13_9PHAE6.500e-554.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:93072..95710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size384
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionPrefoldin
Ec32 orthologEc-12_000070.1
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.4402103-UTR-P-littoralis_Contig201:93071..931941680789985.4402103-UTR-P-littoralis_Contig201:93071..93194Pylaiella littoralis U1_48UTRP-littoralis_Contig201 93072..93194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.4505792-CDS-P-littoralis_Contig201:93194..933201680789985.4505792-CDS-P-littoralis_Contig201:93194..93320Pylaiella littoralis U1_48CDSP-littoralis_Contig201 93195..93320 -
1680789985.4787624-CDS-P-littoralis_Contig201:95575..957101680789985.4787624-CDS-P-littoralis_Contig201:95575..95710Pylaiella littoralis U1_48CDSP-littoralis_Contig201 95576..95710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.14.2prot_P-littoralis_Contig201.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 93195..95710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.14.2

>prot_P-littoralis_Contig201.14.2 ID=prot_P-littoralis_Contig201.14.2|Name=mRNA_P-littoralis_Contig201.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MSESDNALEEARREYAEAKSVALSAQLQEISVAKFEVDALPDKREFEAFF
AKFRSRRRLFLGDGAAVDQMDGQAPAPSPQHGAPGV*
back to top

mRNA from alignment at P-littoralis_Contig201:93072..95710-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.14.2 ID=mRNA_P-littoralis_Contig201.14.2|Name=mRNA_P-littoralis_Contig201.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2639bp|location=Sequence derived from alignment at P-littoralis_Contig201:93072..95710- (Pylaiella littoralis U1_48)
ATGTCTGAAAGCGACAATGCACTGGAGGAAGCACGACGAGAGTATGCCGA
GGCGAAATCCGTCGCTCTGAGCGCGCAGCTTCAAGAGATCTCAGTCGCTA
AATTCGAGGTCGACGCCCTCCCAGATAAACGCGAGGTACGTATCATATGT
TGAATGATTTGATTTGAGATAAAACTCAAGAGTACAAGAAGGCATGTTTC
GTGCTTCACCAGTGGATGAGAGCCATGCCGTCAGCAGTGGTACCACCGCC
ATGGTATCTCCTATTGGCCATCCATTTTGCTTCCACTTGTTGTGTATGCT
GTACGTAGCACCTGGGCCATTCGCATTGGCCGCCTTCCTCATGTATGTGC
GAGATCCGGGGAGGCAACTTGACAGTCCCGAGAGACCGGAAGAATAAAAG
ATAATACTCCGTCTTCGTGTGATACGAAGTAATAAATAAAGAAACACTGG
TAGACGTATTTTACTCTTTGTGTTCGTTGCAATATCTGCTCCAGATCCTT
GTCTGGAGAGAGGCGAACACATTGATGTTTTTGTAAGTTTTTAAAAAATA
AAAGAAGAAAGGATGCGGCAGATTTAGAGTGTCTACTCGTACATACATAT
GACACGTAAAAATCGGCAGACTTGACTCGTGAGTTAGATTTGTGAGTTTG
AAAAGTTGAAAATAGAAAATACCTTTGAACAGACTCACCAATTCGCCTAC
GAGTACGAATCATACTCAGGTGGCCTAACGTACCACAAACGTTAGGCCAA
TAAATAACAAATGAAGGGAGAGCGAGGCCATAAAGAAAACGGGAAAATGA
TTACCAACAGCAGCAACAACCAGCCTTCTGGGACCAGCATAGCAGCAGCA
GCAACAGCAGTTTTGAAACCTCAATATTTATCTCCTTCTCATCATCCTTC
ACATACAAAAAATAACCGATACAGTTAGGGCTGCGCCTGACCCCGCTTTT
TGAGGGTAAAATATGTCCGGAGTTCGTTCCGAAAATGCTGAATAGATTTA
TTTTAGCCAATCATATAACAACATTTTGAGTGACGTTTTCATCTATTGGA
GTCGAAGAGCCCAAAGAACAAACCAAAGAACGGCGAGTACGTGTGTGTGC
CGGTGCTGCTGCTGCTCTCACGATTTTCTCTCAAGCGCTCTAGAGGCGCG
ATGCTGACGAAGCAGCAGTAACAGCAGCACTAGCAGTGTGCATTGCTGTG
CAAAGCAGCCGCCTGTGATTCAACAAGCAGCAGTAGCCAGATCACACCAC
CAGTGGGCCGCCATGGCCGATAGCGCGCAAGGACGCGGACAGCAGCCCTA
GAGCAATAATCAATCTCAACAAGCAGAGAGCGAGCCTGCTCCTGCTGCTG
CTACTTCTGCTTTCGATGGCTTCGTCTTTGCTATCCGTATCGGATGTCTC
TTGCACATCCTGCACCTCGCGGTGAATGCGGGGATGCAGTCTCTGTTCTT
CATGGGCCCCCTCACTCAGGCGTCATGGCACGAGTGGCCAAAGCCTCACC
TCGTCGCTTTACTTGGATCACTTTGGTACAACACCTCCAGGTCGGATTCA
TCTTGTATTTCATGGAAAAGATTTCAAAACCTGGTGTTTGGAAGCAAAGG
GGTCTTGTGGAAAACAAAATTCATCAGGCCCGCCGAAACGCGGTGGATGG
TGATTTGGGAGGGCGCAGCCATTCTTGAGGAACGCTGGGAGCAGGTCCGG
TGGCTGTTTGTGGAGTGGGCTGCCAAGGTTCTACTTCGCACCCCGTTCAT
GTCGTACTGGTTCAAGGCGACGTGCATGCTCCAAAATCCTCTCATCCGAG
TACACGCTAAGTTTTGTGGTGCCCTGCACAAGGCGATCCTGAGTTGGGCA
TACAACTGGCTGCGTGGCGAGGGTGGATACTTCTTGAAGGGCCCTGATGG
AGTACCGAAGCGGCTGCCACCTGGGATGCGATTGGCCGAAGTACCTGACT
TCTCCCTCTTGTTACTCTCCCGCCTGATCGAGCTTCGCGAGCACCCATGG
AAGTATTTTCCTGAGCTGCTCTATTTTGCGATGCAGAAGCTGGACGACGA
AGAGGTGAAAAAATGATTTCCCAGCAGCAGCTGTTTTTTTATCTGAACAA
ATGAATGAAAAAATGTTTTTACAGCAGTCTGAATTTGACTGAAACAAAGA
GGGAAAAATGATTTTTTTCCAAATCAAGAAAGAGAAGGCTGAACAAAACT
TTTTGCGGAACATCTTCTGCTGCTGTTTGCCTGCTCTCTTTCTCCGCTAT
CTGTCGTCTCCTGCTCGCGAGCGCCGGCTCGCATGCGTTGTGACTGGACT
TTCACTACCACCGTTCGCAACCCTCACAAGTTTCCTGTATTTCGCCTACC
CCTGCGTTCTCTATTCTCCTGACGCGTGCTGCTCGACCAGTTCGAGGCAT
TTTTTGCAAAATTTCGAAGTAGGCGGCGGCTTTTTTTGGGAGATGGAGCA
GCGGTGGATCAAATGGACGGACAGGCACCAGCACCTTCCCCTCAGCATGG
CGCGCCTGGGGTGTAGTTCTTTTTACGAAGGAAAGTGGGCTGGGTCGGAG
AAGGCTTTTGACCAGCAGATTCATGGACTGCAGCTCCCTTTTCCTTTGGC
TGGCCTGCATCCTCGCTTCAAGAACTTGCTGCTTAAGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig201:93072..95710-

>mRNA_P-littoralis_Contig201.14.2 ID=mRNA_P-littoralis_Contig201.14.2|Name=mRNA_P-littoralis_Contig201.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig201:93072..95710- (Pylaiella littoralis U1_48)
ATGTCTGAAAGCGACAATGCACTGGAGGAAGCACGACGAGAGTATGCCGA
GGCGAAATCCGTCGCTCTGAGCGCGCAGCTTCAAGAGATCTCAGTCGCTA
AATTCGAGGTCGACGCCCTCCCAGATAAACGCGAGTTCGAGGCATTTTTT
GCAAAATTTCGAAGTAGGCGGCGGCTTTTTTTGGGAGATGGAGCAGCGGT
GGATCAAATGGACGGACAGGCACCAGCACCTTCCCCTCAGCATGGCGCGC
CTGGGGTGTAG
back to top