mRNA_P-littoralis_Contig201.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.1.1
Unique NamemRNA_P-littoralis_Contig201.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:13702..14987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size450
Hectar predicted targeting categoryother localisation
Exons3
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.5956807-CDS-P-littoralis_Contig201:13701..137981680789985.5956807-CDS-P-littoralis_Contig201:13701..13798Pylaiella littoralis U1_48CDSP-littoralis_Contig201 13702..13798 -
1680789985.6074147-CDS-P-littoralis_Contig201:14206..143321680789985.6074147-CDS-P-littoralis_Contig201:14206..14332Pylaiella littoralis U1_48CDSP-littoralis_Contig201 14207..14332 -
1680789985.6174881-CDS-P-littoralis_Contig201:14760..149811680789985.6174881-CDS-P-littoralis_Contig201:14760..14981Pylaiella littoralis U1_48CDSP-littoralis_Contig201 14761..14981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.630343-UTR-P-littoralis_Contig201:14981..149871680789985.630343-UTR-P-littoralis_Contig201:14981..14987Pylaiella littoralis U1_48UTRP-littoralis_Contig201 14982..14987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.1.1prot_P-littoralis_Contig201.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 13702..14981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.1.1

>prot_P-littoralis_Contig201.1.1 ID=prot_P-littoralis_Contig201.1.1|Name=mRNA_P-littoralis_Contig201.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MSGRARVPLGASKRTEMFGPASGRTTPSSEEDFLSANKDVPRAVSRQQQP
QQQQTGAGGASATPYGALSPGRRRPFSSPYNGNPVAPGRAEYGPTSQSGR
EGGTPTGNEGAQESPRGEVSRSKNATGGDNGAHHGDEDMLELEHIIG*
back to top

mRNA from alignment at P-littoralis_Contig201:13702..14987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.1.1 ID=mRNA_P-littoralis_Contig201.1.1|Name=mRNA_P-littoralis_Contig201.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1286bp|location=Sequence derived from alignment at P-littoralis_Contig201:13702..14987- (Pylaiella littoralis U1_48)
GAACATATGAGTGGCCGAGCACGGGTGCCCCTGGGGGCCTCGAAACGAAC
CGAGATGTTTGGCCCAGCATCGGGTAGGACGACACCCTCGTCGGAGGAGG
ACTTTTTATCAGCTAACAAGGATGTCCCACGTGCAGTTTCACGGCAGCAG
CAGCCGCAACAACAGCAGACAGGAGCCGGCGGTGCCTCAGCTACGCCATA
CGGGGCCCTGTCGCCAGGACGACGACGGTGCGCTACTTTTGTCGATATCA
AAAGTTTGTGTTCATGATGAGCCAGCCGTCAGCGCAGTTGCAGGATCTCC
GTGGTGCTCCTACCATACCGTGGGTAGATTCGGACGTCGTCTCGGCAGCC
GAAACATAGACTAGACTATACTTCGTACACAAATTTCATTGCAGCATCTA
TACAAACCAGCACCTTGCGAGAATAAGCAACTTCTCGCATACAAAGGTAC
ACCGCAGGAGTGCGACAAGACATGACGGTTCTGCGGCTTACCGCATCGGT
GATGATCATACCCTTCGAAACTGTGGCTGGCGAATGACACCTCCAGAGGT
TGCATGGCGTGATATATCACAGCCAGTCTACATGATGGTGTATCCCTACC
CAAATGTTCTGTGTCTCCTTGCTATTGTCTGTACCCTGGTGCGGAATGAC
GTTAGGCCTTTCTCTTCGCCGTATAACGGCAACCCGGTCGCACCCGGGAG
GGCGGAGTACGGACCCACCAGCCAAAGCGGTCGGGAGGGTGGCACACCGA
CTGGCAACGAGGGGGCACAGGAATCTCCCAGGTGCACATGGCCCGCTCAC
CGCTTGCCAGACAACTGCTTGTGGAAGTGTTCACTGTTAGCGATCCTCTC
TAACACCACAGCTGTTCGAGCCCCGGATATACTCTTGATAGATATCCACT
TCACCACTGTGCTAATTAGTTAACGGCTGACTGATTAACAGAGCGATACA
TAAAGAGGATATCTAATGTTTTGTCGTTCTTGCATCATGGCTAGGGGTGA
TGTACAGGTTATCCCAAACCCCCCCGTCTACATGTCGGTTGGTGACGAGC
CATTTGTGGACGTACATATACTCTGCTGTAGTACCGAATCGTGGATTGTA
AACTTCTATGCCATGCTGCTACGTCTTCAGCCCTGACCAGTGTATCTCCT
TCTTCTTCGGATTGATCGTTGCGTCGGGTGCATGCGTAGGGGTGAAGTAT
CCCGATCGAAGAACGCCACCGGGGGGGACAACGGGGCACATCATGGCGAC
GAGGATATGCTTGAACTCGAACACATTATCGGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig201:13702..14987-

>mRNA_P-littoralis_Contig201.1.1 ID=mRNA_P-littoralis_Contig201.1.1|Name=mRNA_P-littoralis_Contig201.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig201:13702..14987- (Pylaiella littoralis U1_48)
ATGAGTGGCCGAGCACGGGTGCCCCTGGGGGCCTCGAAACGAACCGAGAT
GTTTGGCCCAGCATCGGGTAGGACGACACCCTCGTCGGAGGAGGACTTTT
TATCAGCTAACAAGGATGTCCCACGTGCAGTTTCACGGCAGCAGCAGCCG
CAACAACAGCAGACAGGAGCCGGCGGTGCCTCAGCTACGCCATACGGGGC
CCTGTCGCCAGGACGACGACGGCCTTTCTCTTCGCCGTATAACGGCAACC
CGGTCGCACCCGGGAGGGCGGAGTACGGACCCACCAGCCAAAGCGGTCGG
GAGGGTGGCACACCGACTGGCAACGAGGGGGCACAGGAATCTCCCAGGGG
TGAAGTATCCCGATCGAAGAACGCCACCGGGGGGGACAACGGGGCACATC
ATGGCGACGAGGATATGCTTGAACTCGAACACATTATCGGGTGA
back to top