mRNA_P-littoralis_Contig200.92.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 1031 bits (2666), Expect = 0.000e+0 Identity = 516/613 (84.18%), Postives = 562/613 (91.68%), Query Frame = 1
Query: 1384 MYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWAASGDAMELVAELERGIETVKWQLDADDILTSVMWAWPEQILLAKTYGGIVIQDSTCLTNRYDYKLCLYVGVDSENKTQVFAQGFFGNGSIEAFDFANKFFLEICGGYPKVIITDSDMAMKSSIEGVFP--HTMHLLCSWHICKSIKKKCMSILKKENCTSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEGLASMQSLQNLATRSASDSNDATN------GSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADEFKGQSIHPRWRSSVEPWSIAKVPLGTFDGDADGSYDGGFTGEWEQSGDFEDLQGDNTQDPVLSVLRGRAAANLTELCNRAIRTFTDSMTRDSTIADQSMFGDLTRHVNDFVQKRRSGDTEQSSF 3198
MYRCIAESI+PQKLGPRGARKVRNMSRKVTGELWA+SGDA+ELVAELERG ETVKW+LDA++IL S+MWA PEQILLA+TYGG+VIQD+TCLTNRY+ KLCL+VGVDSENKTQVFAQGFF N S EAFDFANKFFL+ICGG+PKVIITDSD AMK SI GVFP HT HLLCSWHICK+IKKKC+SILK E C LLRRWTRASLATS +AFDGVW DVE+LVKGTDCEEYIL FLY RRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGR+LRRNSTFRQ+RAKC+++A EL LASTMQ TK TSLGKG+VE+ VKKSMEKV T YA+VGASKYA++EIWAEMLASSAYD+SIV+EG SMQ LQNLATRS +DSND+TN G+GDVCCQVP++VF+ED APDTTMFGTTSLHSFCRLVE VEIDCIVKVLY+ K DRKVGHLV+VGPGGFQLCTCLQLLRRGLQCRHVLAALVT+LKR+DEFKGQSIHPRWRSSVEPWSIA+V LGTFDGD DGSYDGGFTG+WE SGDFEDLQGDNT VLSVLRGRA ANLTELCNRA+RT+TDSMTRDST ADQSMFGDL RHVNDFV+KRRSGDTE+SSF
Sbjct: 1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKSEKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVTEGRDSMQFLQNLATRSVNDSNDSTNVSGHDHGAGDVCCQVPKEVFEEDEAPDTTMFGTTSLHSFCRLVECVEIDCIVKVLYKHKPDRKVGHLVIVGPGGFQLCTCLQLLRRGLQCRHVLAALVTRLKRSDEFKGQSIHPRWRSSVEPWSIAEVKLGTFDGDGDGSYDGGFTGDWEPSGDFEDLQGDNTSVSVLSVLRGRAFANLTELCNRAVRTYTDSMTRDSTTADQSMFGDLMRHVNDFVEKRRSGDTEESSF 613
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 680 bits (1755), Expect = 2.460e-218 Identity = 451/1080 (41.76%), Postives = 602/1080 (55.74%), Query Frame = 1
Query: 46 TSGAGDGRTSATDYKSKCLALYIKWKA-ARIVAKRGKTRYKHLKNRLAIAEALQKEQKLECTQSFIKVVTNLQLGLGARRVAAAKARGKFDKAASALTKVEARLEK--------VGGDETGEVDKSSSSGDDRSGEDVSDKWFSEDELETDEDEAGGTDARAAVTAAVAAAEVKVAGARKELAERVEALKVAARESKKMCRQLEQASDVANGGVAGEEDKEDEGDGLGGNAAFEAAQKGRIEAIRAWKAYKHAQRALMKAYGNSSDMDIEGASDDESDCDTDGWEGWESGD----DRTDKE-----------------------EEGDK-----PVQLESGFMFDIEEDADATWETVLRRVDAQLRREGFKGKRVPVWRNKIGQGFGRSSRVEIRCAAWGTARGLKKPAQKRTWSCKCKCNFGVAVSLNSIAPPTIQKIELQHVRECTMEACAAVEQQQNLISLDVLEKEWADSIREMTRGGIKPHLMYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWAASGDAMELVAELERGIETVKWQLDADDILTSVMWAWPEQILLAKTYGGIVIQDSTCLTNRYDYKLCLYVGVDSENKTQVFAQGFFGNGSIEAFDFANKFFLEICGGY--------------PKVIITDSDMAMKSSIEGVFPHTMHLLCSWHICKSIKKKCMSILKKENCTSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLAS-----------------------------------TMQP--------------------TKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEGLASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEI---DCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADEFKGQSIHPRWR-SSVEPWSIAKVPLGTFDGDADGSYDGGF 2943
T AG GR ++ K + L K + AR +AK+ K RY LK A A+ L+ + + +T L L A RVAAA AR K+DKA +A +++ R+ K V ++ + D S S RSG + D W S DEL +DE GT + V AAV A ++ V + A +K+ L + SD N DG A+ Q R A+ AWK YK+A R++ + Y MDI+G +D D+ GW W+SG+ D D E E+GD+ PV LE+GF F ++ A+ TW++V+RRV+++L R+GFKGK PV RG +K+ L+H +C M+ A + +++ L+ LEK WAD I+ MT GG++P MYRCI E+I+P+KLG RG RKVRNMS KV+ WA+ DA+ELVA+LERG TVKW+ DA+ +L S+MWA PEQI+LA+TYGGIVIQD+TCL NRYD+KLCL+VGVDSENKT +FAQG N I +FDFAN+F LEI GG P+VIITD+D AM SS+ + PHT HL SWHI K++K+KC E ++RR+T AS ATS KAF+ +W +++ +V+GT CEEYI G+L+ +RKHWARC HPT MTL MT+SQRVEG+FSV+K G +R+NSTF +R + + VA++L LAS T++P TK SL +E VKK++E V EY K GAS YA +EI AEM+AS +YD++++ +G S + L++LA + +++ +G+GDVCCQVP VF PDT+MFGTT L SF RLV V+I D +VKV+Y+ RKVGHLVV+GP GFQLC CLQL+RRGLQCRHVLAALVT+L RA EFKG+ IHPRWR +SV+ WS+ KV LG+FD + SY G F
Sbjct: 363 TGAAGAGRQTSLQAKEEELEAVTKREVEARSIAKKFKARYVRLKAESAHAQYLRDKDARSAQNDYTAALTMLNRTLKAGRVAAAVARRKYDKAVAATSRISRRIRKLRAGIPVDVSCEDNSDFDLDSDSST-RSG-CMGDDWLSTDELSSDE----GT--KEEVEAAVKKAVTTATQGHEKQKRHVLVCRAGAMGAKRTYNTLLKISDALNSSTRE--------DGEAAEASINETQTTRTAAVEAWKKYKNADRSMQEEYEGFDTMDIDGGLEDP--YDSTGWADWDSGEESLSDAPDSEGGGQVGRHVRGQESLGGHMTKVGEKGDERESHGPVSLETGFTFLEKDSAEDTWDSVVRRVESELHRQGFKGKTTPV-------------------------RG--------------------------------KKVNLEHHADCEMQHVAKKHKDDSVVPLEELEK-WADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGG----EVFADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRMWVSRGVKARVALYHIFILIHCIGMYGLLRGVSHTVEPASFTITSITAVRCLSPCRLSTKAGSLRFAHMEDDVKKAIEPVMKEYEKAGASTYARREIMAEMVASDSYDTTVLVKGRESKRFLEDLAAQPSNN-----DGNGDVCCQVPADVFDGKKHPDTSMFGTTCLQSFYRLVAHVDIYMGDAVVKVVYKR---RKVGHLVVIGPDGFQLCACLQLMRRGLQCRHVLAALVTELDRASEFKGEFIHPRWRPNSVDTWSLDKVELGSFDEEGRTSYKGRF 1354
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 3.750e-123 Identity = 272/708 (38.42%), Postives = 377/708 (53.25%), Query Frame = 1
Query: 1321 LEKEWADSIREMTRGGIKPHLMYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWAASGDAMELVAELERGIET-VKWQLDADDILTSVMWAWPEQILLAKTYGGIVIQDSTCLTNR------------------------------------YDYKLCLYVGVDSENKTQVFAQGFFGNGSIEAFDFANKFFLEICGGYPKVIITDSDMAMKSSIEGVFPHT-MHLLCSWHICKSIKKKCMSILKKENCTSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSE----GLASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLY---RDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADEFKGQSIHPRWRSSVEPWSIAKVPLGTFDGDADGSYDGGFTGEWEQSGDFEDLQGDNTQDPVLSVLRGRAAANLTELCNRAIRTFTDSMTRDSTIADQSMFGDLTRHVNDFVQKRRSGDTEQSSFRA-EDPPVS--SSRKQTRSRDCFEKGGKAKKVKTEVK 3300
LE + IR T G+K MYR I+E ++P +LG G +KV+ E W+ DA++LV+EL+ VK+ D L V W+ +Q + A+ +GGIV+QD+T LTNR Y L++GVDSENKT VFAQGFF + S + + +A K + ICGG P+VIITD+D M ++E P T +HL C WH+ K+++K C L K+ + R A+ A + +A W ++ VKG+DCEEY+ G L +HW+RCF PT MTL+MT++QRVEG FSVLKKGRI+ R + +++A+ ++ LAS + TK SLG+ ++ V K+ E V + VGAS YA E+ AEM AS+AYD++++++ A L LA R T G C VP + F+ PD TM+GTTSL SF LV V I+ +V+V Y R KV H+VVVGP GFQLCTCL+L+R GL C HV AALVT+L RA +F G SIHPRWR SV WS+ V LGTFDG ++ GGFT ++ GDF+ GD+ SV R A + + + T D T A + + VQ G +PP++ + RK+TR +D G K K++V+
Sbjct: 7 LEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKVQR-------ECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKK-ASRFYRLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGG-----RTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE--TFTGGFTEDFG-GGDFD---GDSQDTLNTSVAYTRKKAYVDYIAMAQQWANQAAATLDGTPAAYQAYCAMVERQRHEVQALLRGPGPSDGLAGLGNPPIALPNDRKETRHKDAAGTEGGRPKKKSKVE 692
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE) HSP 1 Score: 194 bits (493), Expect = 6.750e-48 Identity = 162/527 (30.74%), Postives = 251/527 (47.63%), Query Frame = 1
Query: 1465 KVTGELWAASGDAMELVAEL--ERGIETVKWQLDADDILTSVMWAWPEQILLAKTYGGIVIQDSTCLTNRYDYKLCLYVGVDSENK-TQVFAQGFFGNGSIEAFDFANKFFLEICGGYPKVIITDSDMAMKSSIEGVFPHTMHLLCSWHICKSIKKKCMSILKKENC-TSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEG------------------LASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRH---VLAALVTQLKRADE------FKGQSIHPRWRSS----VEPWSIAKVPLGTFDGDA-DGSYDG 2937
K++ EL A DA + +A L E G+ LDA L V W+ EQ +GG + D+T TN + C + G D + TQ F + N++ G PKVI+TD+D+AM ++I +P T+HL C WHI K+++K C S + T +LR + RA+ A +P+AF ++ LV G CE+Y+ + + K WA C+ PTV+TL M ++QR EG F V K+ + ++ S L + V++ + + + T + G F + V++ + V E GAS+Y +K + S +YD +V+ G + +++ N+ + D++ + ++ A D TM+ TSL +F LV I+ + V Y+ A+ HLV GP F L +CLQLLRRGL CRH VLA L+ + +DE F G +H RWR S V PWS++ V + G+ DG + G
Sbjct: 174 KLSDELNAKPEDATDFLASLKSEPGMYC-DHTLDAQGRLVDVFWSTIEQQAHIARFGGCIQLDTTVFTNSACF--CAFWGRDCCGQCTQTFER------------MLNRYETAAGGRRPKVILTDADLAMTAAIASCWPDTLHLHCLWHIFKNVRKNCSSSFPDNDAKTDMLRTFRRAAYAATPEAFATQAARLKTLVAGKKCEDYMTDLITNKTK-WAFCWRPTVVTLGMVATQRTEGLFGVAKRSGVEKKLSLC-ALWDRLQHVSKMIAIETARLATPLITPGVAFRDKHVEEFFQPVKQELLACGASQYCQK-----VDGSESYDVELVTSGNVDEDGQPLPLHDDDFVQIRNLRLKLNILQVAPPDTD------------LERDSLADEPAEDNTMWACTSLLAFLELVAGFPIELVAAVRYKYSANNP-SHLVAFGPHNFHLRSCLQLLRRGLPCRHYFAVLANLIGRTGESDEWSFTHAFDGSCVHNRWRQSDDGKVLPWSVSFVLSSSGHGEGWDGHHQG 665
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5JY17_9PHAE (SWIM-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY17_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.410e-44 Identity = 150/486 (30.86%), Postives = 234/486 (48.15%), Query Frame = 1
Query: 1693 VGVDSENKTQVFAQGFFGNGSIEAFDFANKFFLEICGGY-PKVIITDSDMAMKSSIEGVFPHTMHLLCSWHICKSIKKKCMSILK-KENCTSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEG-------------------LASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRA-------DEFKGQSIHPRWRSSV----EPWSIAKVPLGTFDGDA-DGSYDGGFTGEWEQSGDFEDLQGDNTQDPVLSVLRGRAAANLTE 3051
VGVD EN++ V QG + E F + + + GG PKV++TD+D AM S++E + T+HL C WH+ K++ K C S KE +LR + A+ A +P+AF D+E +VKG CEEY+ + + K WA PT++T+ M ++QR EG F V K+ + ++ S L K + Q++ + + T+ F ++ + E +VGAS+Y + E AE+ S +YD ++ G L +++ +L + D++ + C + PE ED ++++ TSL + L+ + + V Y+ R GH+VV GP GF LC+CL+LLR GL CRH A LV L F G S+H RWR S+ EPW++++V T GD DG +G W + D +D GD P + AA + T+
Sbjct: 2 VGVDDENRSCVLGQGVLRSECKETFQWFLEAYETAAGGRRPKVMLTDADRAMTSALEE-WTTTLHLFCLWHVFKNVLKNCSSSFPDKEERAKMLRLFRSAAYAATPEAFARYRVDLEKIVKGKKCEEYMDALIQDKTK-WAFSCRPTLLTMGMVATQRTEGMFGVAKRSGVHKKLSLC-GLWEKLQLMYQKMDVEYSRVATRGVGAELPFQTKHLQGIFAPIQEELKRVGASQYCQVEARAEVGGSQSYDVEVICAGATDDDGRPDPLGEGVLRRKLEAVRFDLSLFEEAKPDTDLEKD-----CMRGPEAESTED----SSVWARTSLEALLDLIGELPVHVAAAVRYKLTPARP-GHVVVFGPNGFHLCSCLKLLRHGLVCRHYFAVLVRFLGCRFKGILLDHRFDGNSLHARWRQSLDGNDEPWTVSRVLKETGHGDGWDGCEEGADDNFWGPTFDDDDA-GDGVH-PSERAAKAAAARSATD 472
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE) HSP 1 Score: 179 bits (454), Expect = 5.420e-42 Identity = 136/348 (39.08%), Postives = 181/348 (52.01%), Query Frame = 1
Query: 2287 TKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSE----GLASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLY---RDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADEFKGQSIHPRWRSSVEPWSIAKVPLGTFDGDADGSYDGGFTGEWEQSGDFEDLQGDNTQDPVLSVLRGRAAANLTELCNRAIRTFTDSMTRDSTIADQSMFGDLTRHVNDFVQKRRSGDTEQSSFRA-EDPPVS--SSRKQTRSRDCFEKGGKAKKVKTEVK 3300
TK SLG+ ++ V K+ E V + VGAS YA E+ AEM AS+AYD++++++ A L LA R T G C VP + F+ PD TM+GTTSL SF LV V I+ +V+V Y R KV H+VVVGP GFQLCTCL+L+R GL C HV AALVT+L RA +F G SIHPRWR SV WS+ V LGTFDG ++ GGFT ++ GDF+ GD+ SV R A + + + T D T A + + VQ G +PP++ + RK+TR +D G K K++V+
Sbjct: 705 TKAPSLGRQHIDDHVLKTAEHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGG-----RTEG---YCADVPAEAFEGSHDPDITMYGTTSLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCGLPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFDGHE--TFTGGFTEDFG-GGDFD---GDSQDTLNTSVAYTRKKAYVDYIAMAQQWANQAAATLDGTPAAYQAYCAMVERQRHEVQALLRGPGPSDGLAGLGNPPIALPNDRKETRHKDAAGTEGGRPKKKSKVE 1038
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5JZB4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB4_9PHAE) HSP 1 Score: 159 bits (403), Expect = 6.850e-36 Identity = 168/615 (27.32%), Postives = 250/615 (40.65%), Query Frame = 1
Query: 1339 DSIREMTRGGIKPHLMYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWAASGDAMELVAELERGIET-VKWQLDADDILTSVMWAW-PEQILLAKTYGGIVIQDSTCLTNRYDYKLCLYVGVDSENKTQVFAQGFFGNGSIEAFDFANKFFLEICGGY-PKVIITDSDMAMKSSIEGVFPHTMHLLCSWHICKSIKKKCMSI----------------------------------------------------LKKE---NCTS----------LLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEGLASMQS---------LQNLATRSASDSNDATNGSGDVCCQVPEKVFQE-DGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRA-------DEFKGQSIHPRWRSSVE----PWSIAKVPLGTFDGD 2916
D +R+ T G+KP M++ + L +KV N +K+ EL++ D +A+LE VK D+ + V WA +Q +A T G + D+T T+RY L VGVD EN+T V QG + S E F + + E GG PKV++TD+D AM +++ + +HL WH+ K + K C S L K+ +C+S +LR + A+ A +P+AF D+E V + + WA PT +TL M +++R EG F V KK I ++ S L A DR+ + TM +E G S+Y + E E+ S +YD ++ G A + L+ + D N G D ++ K+ E + D T++ TSL + L RV + V Y+ R GH+VV GPGGF LC+CL+L+R GL CRH A L + EF G S+H RWR S + PW+ ++V G GD
Sbjct: 307 DDVRKWTTAGVKPTDMFKLLKMHYDGLCLAKDEKKKVYNAIKKIQNELYSTPEDGANFLAKLEAEPGMFVKRTFDSLGRIVDVFWATVDQQDKMAAT--GCMQMDTTVFTDRYGCPLLFIVGVDDENRTCVLGQGVLRSESTETFKWFLDSYEEAAGGRRPKVMLTDADQAMAAALRE-WKTIVHLWYLWHLNKDVVKHCSSFFSDPRTREKMLRLFRNAAYAATPEVMLTDADQAMAAALREWKTIVHLWYLWHLNKDVVKHCSSFFSDPRTREKMLRLFRNAAYAATPEAFAAYRADLERTVATSTSGTF--------STKWAFSCRPTALTLGMVATKRTEGMFGVAKKSGIHKKLS----LCALWDRLQH---VYQTMD-----------IEHG-----------------SQYCQLEAKDELGGSQSYDVEVICVGAADDEGHPVPLEGDVLRQQLEAAHFDFNLCEEGPPDTDLEIDCKLDPEAESTEDNTVWARTSLEALLDLFSRVPVHLAAAVPYKLTPSRP-GHVVVSGPGGFYLCSCLKLMRHGLPCRHYFAVLFRFVGGKFGGVLLNHEFDGNSVHTRWRQSPDGSHAPWTASRVLEGAGQGD 874
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5K6K4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K4_9PHAE) HSP 1 Score: 141 bits (355), Expect = 7.400e-35 Identity = 85/168 (50.60%), Postives = 106/168 (63.10%), Query Frame = 1
Query: 2398 EIWAEMLASSAYDSSIVSEGLASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADEFKGQSIHPRWRS-SVEPWSIAKVPL 2898
E +EML Y ++ EG SM+ L++L A SN +G+GDVCC+VP + F P+T FG L SF RLV V+ID VKV Y+ ++ V HLVV+GP FQ+CTCLQ++RRG QCRHVLAALV R EF G SIHPRWR S EPWS+ +V L
Sbjct: 6 EFMSEMLTFLYYCPEVLVEGKGSMRFLEDLT---AHPSN--RDGNGDVCCEVPREAFDGKDNPETK-FGAICLQSFFRLVANVKIDAGVKVSYKYRSPT-VSHLVVLGPDRFQMCTCLQVMRRGWQCRHVLAALVRS-NRDSEFAGASIHPRWRPRSAEPWSLERVAL 165
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE) HSP 1 Score: 150 bits (380), Expect = 5.520e-33 Identity = 118/371 (31.81%), Postives = 176/371 (47.44%), Query Frame = 1
Query: 1867 FPHTMHLLCSWHICKSIKKKCMSILK-KENCTSLLRRWTRASLATSPKAFDGVWKDVENLVKGTDCEEYILGFLYGRRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPTKHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEG---------------LASMQSLQNLATRSASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRADE---------FKGQSIHPRWRSSVE----PWSIAKV 2892
+P TMHL C WH+ K++ K C S ++ T +++ + + A +P+ F +E LV G CE YI + + K WA C PTV+TL M ++QR EG F V K + ++ S L + R+++ + + + T G F + V+ V E GAS+Y ++ A+ +YD+ +VS G LA ++SL+ L + T+ GD + A D TM+ TSL +F L+E + I+ +V V Y+ A+R HLVV GP F LC+CLQLLRR L CRH A LV + R E F G +H RWR + W+I+ V
Sbjct: 681 WPGTMHLHCLWHVFKNVLKNCSSSFAYNDDKTDMMQCFRNEAYAATPEVFGTQVARLEQLVAGKKCEGYIADLIKNKTK-WAFCCRPTVLTLGMVATQRTEGLFGVAKSSGVEKKLSLC-ALWDRLQRLSKMIAIETARLATPPLGAGVAFGDIHVENFFRPVKQELLACGASQYCQQVDEAQ-----SYDAELVSSGRVEENGDPLPFHENDLAKIRSLR-LKLNVLQVAPPDTDLEGDQ--------LAGEAAVDNTMWARTSLSAFLDLIEDIPIELVVAVRYKWTANRP-SHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSV 1034
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE) HSP 1 Score: 128 bits (321), Expect = 2.170e-26 Identity = 96/286 (33.57%), Postives = 140/286 (48.95%), Query Frame = 1
Query: 2080 FLYGR-RKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRILRRNSTFRQLRAKCDRVAQELLLASTMQPT-----KHTSLGKGFVESGVKKSMEKVATEYAKVGASKYAEKEIWAEMLASSAYDSSIVSEGLASMQSLQNLATR--------SASDSNDATNGSGDVCCQVPEKVFQEDGAPDTTMFGTTSLHSFCRLVERVEIDCIVKVLYRDKADRKVGHLVVVGPGGFQLCTCLQLLRRGLQCRHVLAALVTQLKRAD-EFKGQSIHPRWRSSVEPWSIAKV 2892
F GR R+ WA CF+P +TL +TS+QRVE +VLK ++ R S+ +L A + V +L L S KH + G + + +K E + ++GAS YA +E +A+ Y + +++G ++ +L +R +A DS D N +DG D TM+ TSL +FC L+ +I + K+ +R HLVV GPGGF LC+CL LL G CRH LA L + EF +HPRWR PWS+A +
Sbjct: 199 FYCGRKREKWAFCFNPGALTLGITSTQRVERMNAVLKH--LISRYSSLSRLDAALETVEAKLHLESERGNNDKVLMKHPTWSSGVLGTMLK-FFEPIGQALKQLGASNYALDVTKSEAVAAMTYATERLAQGSDAVTTLLPTLSRGEGGVRFATAPDSRDLPN-------------IDDDGGDDATMYARTSLPAFCALLHGQDITEVYKISFRSGGADGRAHLVVTGPGGFYLCSCLHLLHTGRFCRHFLAVLADFFAKGGWEFDPACLHPRWREDERPWSMASI 468 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.92.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig200.92.4 >prot_P-littoralis_Contig200.92.4 ID=prot_P-littoralis_Contig200.92.4|Name=mRNA_P-littoralis_Contig200.92.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=900bp MCRQLEQASDVANGGVAGEEDKEDEGDGLGGNAAFEAAQKGRIEAIRAWKback to top mRNA from alignment at P-littoralis_Contig200:300924..309596- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig200.92.4 ID=mRNA_P-littoralis_Contig200.92.4|Name=mRNA_P-littoralis_Contig200.92.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=8673bp|location=Sequence derived from alignment at P-littoralis_Contig200:300924..309596- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig200:300924..309596- >mRNA_P-littoralis_Contig200.92.4 ID=mRNA_P-littoralis_Contig200.92.4|Name=mRNA_P-littoralis_Contig200.92.4|organism=Pylaiella littoralis U1_48|type=CDS|length=2700bp|location=Sequence derived from alignment at P-littoralis_Contig200:300924..309596- (Pylaiella littoralis U1_48)back to top |