mRNA_P-littoralis_Contig200.91.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.91.1
Unique NamemRNA_P-littoralis_Contig200.91.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:293067..294984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size697
Hectar predicted targeting categoryother localisation
Exons4
Cds size696
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789983.9176784-CDS-P-littoralis_Contig200:293066..2932711680789983.9176784-CDS-P-littoralis_Contig200:293066..293271Pylaiella littoralis U1_48CDSP-littoralis_Contig200 293067..293271 -
1680789983.9297702-CDS-P-littoralis_Contig200:293434..2936241680789983.9297702-CDS-P-littoralis_Contig200:293434..293624Pylaiella littoralis U1_48CDSP-littoralis_Contig200 293435..293624 -
1680789983.940835-CDS-P-littoralis_Contig200:294051..2942861680789983.940835-CDS-P-littoralis_Contig200:294051..294286Pylaiella littoralis U1_48CDSP-littoralis_Contig200 294052..294286 -
1680789983.955313-CDS-P-littoralis_Contig200:294918..2949841680789983.955313-CDS-P-littoralis_Contig200:294918..294984Pylaiella littoralis U1_48CDSP-littoralis_Contig200 294919..294984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.91.1prot_P-littoralis_Contig200.91.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 293067..294984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.91.1

>prot_P-littoralis_Contig200.91.1 ID=prot_P-littoralis_Contig200.91.1|Name=mRNA_P-littoralis_Contig200.91.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=232bp
LFSALRLRQDAASGREKRRRRRATESRHSEEVLAGMLTRTGRDATNSQAG
QQRASASSCTIALLRAGCPRPAVQHLHRSGEVGLGRAMGLAGGDSSDIDS
GISEWGSGDDGDTATFEEFLDKEARNTRRNNRGSSPVSSSSTCRSLDDSR
RPSRAASKPRPAQKEKVTEGLPAPQALPAEVSPEATIVSVNTKSQTKTCQ
TTFEERSLPTSRQNAPAPQAPRQLSQVIEKCQ
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mRNA from alignment at P-littoralis_Contig200:293067..294984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.91.1 ID=mRNA_P-littoralis_Contig200.91.1|Name=mRNA_P-littoralis_Contig200.91.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1918bp|location=Sequence derived from alignment at P-littoralis_Contig200:293067..294984- (Pylaiella littoralis U1_48)
CTTTTCTCGGCACTGCGTCTACGACAAGATGCAGCGTCTGGTCGGGAGAA
ACGCCGGCGCCGCCGGGTAAGCCTACACACCTTTGTTGACGGATGTTGTC
GGCGGAGCGTTTCAAAAGGTCTTCGCTAGATGCACTTTCCTCTAGACTGC
TTGGTCAGCACGCTCACTTGAAGTGGGCAAGTGTGGGGTGAGTCTATCTG
TGTTGCAAAGAATTAATGCCGCCGGGAGTTCGAATGCAATCAGGTCGCGG
GCCTTTTCTATGGAAGATAAAAAGTTCGCACGTTAGATGGCAAAGGGGTT
TCGGCCCGCGAACCACCATGAGCTCGCTTGTACTCAGGAGCGTTTGGCGA
GGAGGCGACGAAGGCAGGGAAGACCCGCAAACCCTCAGAGACCACCGTGT
ACCTGATGAGATAGGATAAAATCCAAGGAACATACCATATGTTTTTCTCG
CGGATGGACTTCTCCACAACGGTAGACCACTCAGTCAGAGAAGCATTGCA
AGTGTGGGTAAGCAGCAGGATACACGACAAAGAAGGCGCATTTTCCTCAC
ACACAGCAGCAGTATTATCCGCGCCTAAACGAACTCCGAGTTCGAACGCA
CCCACGACAGTGGCTACAGGCTCGAAATACGAGCAAACACCACTTTTTCT
TGAGAAGTAAAAGTCACCGGTCCACCTCTTCGATCCGTGGGAAAACAGGC
GACAGAAAGCCGGCACAGCGAAGAGGTGCTGGCCGGGATGCTCACCCGTA
CTGGCCGCGACGCGACCAACTCCCAAGCTGGCCAACAACGAGCGAGCGCT
AGTAGCTGCACCATCGCCCTCTTGCGTGCCGGTTGTCCAAGACCTGCCGT
CCAGCATCTGCATAGGTCTGGGGAGGTCGGGCTTGGCCGGGCAATGGGGT
TGGCTGGGGGTGACAGCAGCGATATAGATTCAGGTATATACATTGCTCGT
TAGCAATGCTGGCAGGCGATCGTGGTGAGGAAATGCCGGCGCGCGGGCGG
GGGTGGGTCTTGAGAAGTTGGCATACTAGAGGGCTACAGACGAACGGGCG
CGTAGGGGGAGCAATCAAAATTGCTCTAGTGTACCCTCTTGCTTTCTCCA
TTTAGCGCAGCGAATGCAACAGTGCGGAGGGGGGAGTCCACTCACGCTAA
AGAAATTTCCCCGTGCTTTCTGTCTCACACTTTTATTCAGTGAACAACCA
CGAAGGGTTTGTTTAGCCTTCCGGGCTACACATACAGCTTCCCTCTCGTG
AACGAAGGCATTGGCGCACACAGCAGCTGTTTTTTTTACCAATTATAGGT
CGATCGGTGTCTTCTATGTTTCGCTGTCTCCCGCGCCTCGCTTTGGACTG
ATCTACCTAGGCATTTCGGAATGGGGGTCCGGTGACGACGGTGACACAGC
CACATTCGAGGAGTTCCTAGACAAGGAGGCCAGAAATACAAGGCGAAATA
ACAGGGGTTCTTCTCCTGTCTCCTCATCATCCACCTGCCGCTCACTCGAC
GATTCGCGACGACCTTCTCGAGCGGCCAGCAAGCCCCGGCCAGCGCAAAA
GTGAGCCTATCAGCCGCTCAAGAGCAACGCTTAATTCGTCTACTTTGATC
ATAAAACAGTGAAGTAGTATTTTCCCTGCTTACATTTCAGTTTTTTTTCG
TTCCTACAGCAGCCCTCTCTTTCTGTGCCACACCTCCATGTTCCTCCCGC
ATGCACACTCCAGGGAGAAAGTTACTGAAGGCTTACCAGCACCGCAAGCT
CTGCCGGCGGAAGTTTCCCCCGAAGCTACAATCGTAAGCGTGAACACCAA
ATCGCAAACGAAAACTTGTCAGACGACCTTCGAGGAGAGGTCATTGCCGA
CATCACGTCAGAACGCGCCCGCACCACAAGCGCCGCGCCAGCTATCACAA
GTGATCGAGAAATGCCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:293067..294984-

>mRNA_P-littoralis_Contig200.91.1 ID=mRNA_P-littoralis_Contig200.91.1|Name=mRNA_P-littoralis_Contig200.91.1|organism=Pylaiella littoralis U1_48|type=CDS|length=696bp|location=Sequence derived from alignment at P-littoralis_Contig200:293067..294984- (Pylaiella littoralis U1_48)
CTTTTCTCGGCACTGCGTCTACGACAAGATGCAGCGTCTGGTCGGGAGAA
ACGCCGGCGCCGCCGGGCGACAGAAAGCCGGCACAGCGAAGAGGTGCTGG
CCGGGATGCTCACCCGTACTGGCCGCGACGCGACCAACTCCCAAGCTGGC
CAACAACGAGCGAGCGCTAGTAGCTGCACCATCGCCCTCTTGCGTGCCGG
TTGTCCAAGACCTGCCGTCCAGCATCTGCATAGGTCTGGGGAGGTCGGGC
TTGGCCGGGCAATGGGGTTGGCTGGGGGTGACAGCAGCGATATAGATTCA
GGCATTTCGGAATGGGGGTCCGGTGACGACGGTGACACAGCCACATTCGA
GGAGTTCCTAGACAAGGAGGCCAGAAATACAAGGCGAAATAACAGGGGTT
CTTCTCCTGTCTCCTCATCATCCACCTGCCGCTCACTCGACGATTCGCGA
CGACCTTCTCGAGCGGCCAGCAAGCCCCGGCCAGCGCAAAAGGAGAAAGT
TACTGAAGGCTTACCAGCACCGCAAGCTCTGCCGGCGGAAGTTTCCCCCG
AAGCTACAATCGTAAGCGTGAACACCAAATCGCAAACGAAAACTTGTCAG
ACGACCTTCGAGGAGAGGTCATTGCCGACATCACGTCAGAACGCGCCCGC
ACCACAAGCGCCGCGCCAGCTATCACAAGTGATCGAGAAATGCCAG
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