mRNA_P-littoralis_Contig200.89.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: D7FPF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPF5_ECTSI) HSP 1 Score: 546 bits (1408), Expect = 1.230e-187 Identity = 279/399 (69.92%), Postives = 309/399 (77.44%), Query Frame = 1
Query: 139 LMQQHRTVSEPAGLRRLLRRDHNRRTNKTGGIPAAPPAGILHSMSTMDSHDLEVGGSNGAGDSAT----RKALPKITRLTGVVLLEALAILGLLATLVRVRARCATAFADDWMGLSHENRAIHTGPRAMFVGSRASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHPGGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPWSPVDADAGGAGEGLGVRERL 1323
+ +QH+ V+ P GLRRLLR + +TN T P S+ DLE GG++ A T R +P++T VVLL+A AILGLL +L R RC TA A + + H GPR +FV S+AS+ELTHLIMVPCHGVTVTESLEGADSRD DWFLLDYQKGKDVPRALVGHIQGGLD L+AD+N+LLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPDLRARASTEDFARDSFENVLFSICRFKEITG YPTKIT++GFDFKE+RFE LH P+LRFPPEAFRYVG HP GRFDHAAAAEGER SALEPYR DPYGCA GG L KR RDPFHRTPPYS+VCPEMSELL +C TELF+GDLPWSP + G EG GVRERL
Sbjct: 1 MQRQHQRVAAPEGLRRLLRNEG--KTNMTYSRRVEPMYASKPSLV-----DLEAGGTDLANSKTTAALCRPTMPRLTLAAIVVLLQAAAILGLLVSLALTRDRCRTAAATE---------SFHVGPRVVFVDSQASKELTHLIMVPCHGVTVTESLEGADSRDGDWFLLDYQKGKDVPRALVGHIQGGLDALDADENALLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPDLRARASTEDFARDSFENVLFSICRFKEITGDYPTKITVVGFDFKEDRFEHLHMPSLRFPPEAFRYVGLHPEGRFDHAAAAEGERTSALEPYRSDPYGCAVGGTLVQKRHARDPFHRTPPYSMVCPEMSELLGWCETELFTGDLPWSPASEE--GTEEGSGVRERL 381
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A835Z903_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z903_9STRA) HSP 1 Score: 291 bits (746), Expect = 2.140e-89 Identity = 145/266 (54.51%), Postives = 183/266 (68.80%), Query Frame = 1
Query: 514 FVGSRASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHP-GGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPWSPVDADAGGAGEGLG 1308
FV + A+R LTHLIMVP H +T+ + L A D W LLDYQ+ DV V HIQGG+ AD +LLLFSGG+TR AGPKSEG SYF VA+ WWG+P +R RA++E+FARDSFEN+LFS+ RF+EITG YP KITI+G+DFK +R+ HA ALR+P A Y+G P G RFD A A GE A P++ DPYGC + LA+KR++R+P+ R PPY L PEM+ELL +CG +++G LPW P A+ GG EG G
Sbjct: 43 FVRAGAARLLTHLIMVPGHAITMGDGLAAAPETDEAWHLLDYQREHDVGITFVDHIQGGVTLAAADTAALLLFSGGQTRADAGPKSEGFSYFAVAEANSWWGQPQVRGRAASEEFARDSFENLLFSVARFREITGHYPEKITIVGYDFKRDRYVNQHAAALRYPARAVSYLGIAPRGARFDTAGATAGEAAHAALPFKTDPYGCGSP-VLADKRRDRNPYAREPPYPLTAPEMAELLRWCGPGIYAGALPWDPPAAE-GGKEEGAG 306
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: F0YCD0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCD0_AURAN) HSP 1 Score: 270 bits (690), Expect = 3.500e-82 Identity = 127/243 (52.26%), Postives = 167/243 (68.72%), Query Frame = 1
Query: 541 LTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRY--VGQHPGGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPW 1263
L L++V H VT+ ESLEG + DA W+LL YQ+G+D+PR V H + G + ++LL+FSGG+TR AGP+SE +SY+ +A+H+ WWG P + ARA+TE++ARDS+EN+LFSICRF+E+ G YP + ++ FDFKE RF LHAPA+RFP +AF + V G RFD AAAAEGE +A + DPYGC G L KR+ RDPFHR PY VCPE+ LL +CG L+ LPW
Sbjct: 1 LRRLVVVAGHAVTMAESLEGVEENDASWYLLGYQRGRDLPREFVKHARRGAELAAGRDDALLVFSGGQTRRDAGPRSEAQSYWLLAEHFGWWGLPGVAARATTEEYARDSYENLLFSICRFREVAGDYPEAVDVVSFDFKERRFVDLHAPAIRFPKDAFHFEAVPVDGGSRFDGAAAAEGEAAAAAA-FEEDPYGC--DGELHAKRRSRDPFHRGVPYGTVCPELGGLLAHCGDRLYQEALPW 240
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: W7TH32_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TH32_9STRA) HSP 1 Score: 266 bits (679), Expect = 9.220e-79 Identity = 133/282 (47.16%), Postives = 180/282 (63.83%), Query Frame = 1
Query: 463 MGLSHENRAIHTGPRAMFVGS---------RASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKP----DLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHP--GGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPW 1263
+GLS R R+ + GS R + L HLIMV H VT++ESLEGA++ DA W+LL YQ+ +D+P V HI+ G++ + D SLL+FSGG+TR AGP+SEG SY+ VA+H+ WW D++ RA TED+A DS EN+L+SICRFKE T YPT+I+++ F FK++RF H ALRFP F +VG P GG+FDH A +GE A++ + DPYGC + L K ER+PF RT PY+ CPE++ LLEYC + ++ LPW
Sbjct: 87 LGLSSRPRGSSASLRSSYSGSLRNSFHRNSRGTESLNHLIMVAGHAVTISESLEGAETDDAVWYLLPYQRDQDLPATFVSHIRTGVELAKRDPASLLIFSGGQTRAEAGPRSEGSSYYRVAEHFGWWDSASSPSDVKKRALTEDYALDSIENLLYSICRFKEYTDHYPTRISVVSFAFKQKRFRFHHRAALRFPDSRFAFVGVDPPIGGKFDHKKAEKGELNEAVKLFESDPYGCNSK-KLQEKHAERNPFMRTMPYTFSCPEVAPLLEYCESTIYPDPLPW 367
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A7S2HNT6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HNT6_9STRA) HSP 1 Score: 264 bits (674), Expect = 2.250e-78 Identity = 144/328 (43.90%), Postives = 190/328 (57.93%), Query Frame = 1
Query: 349 KITRLTGVVLLEALAILGLLATLVRVRARCATAFADDWMGLSHENRAIHTGPRAM-FVGSRASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWW----------------GKPDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHP--GGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPWSPVD 1275
K T + +++ +++L ++ ++A TA + L ++ P A F + + HLI+V H V V +LE A + WFLLDYQK +P+A+V HI+ G+ E D SLL+FSGG+TR GP +EG SYF VAD D W G+ +RAR TE+FA DSFEN +FSICRFKEITGSYP KIT++ F FK RF+ LHA AL +P F YVG P FD A + GE +A +P+ DPYGC + L KR+ER+PF RTPPY L CP+MS LL+YCG ELF +LPW +D
Sbjct: 18 KQTNMIKYLIIILISVLAVVLLFYNIQAAANTAVLESDKSLRGTHKKSWVSPNAQAFNEHLEATQTNHLIIVAGHSVIVAGNLEDAAYDENVWFLLDYQKSVGMPQAIVSHIRAGIAEAAKDPKSLLIFSGGETRASTGPVTEGSSYFRVADALDLWQGENINDVPLVGRLADGRTTVRARTITEEFATDSFENFMFSICRFKEITGSYPQKITVVSFTFKRRRFQQLHAKALHWPLNRFSYVGIDPLPSTGFDLAKSKAGEVQNAAKPFESDPYGCHSP-ILQQKRKERNPFSRTPPYKLSCPDMSRLLDYCGPELFPSELPWDYLD 344
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A1E7EWA2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EWA2_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.030e-77 Identity = 127/245 (51.84%), Postives = 165/245 (67.35%), Query Frame = 1
Query: 547 HLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKPD---LRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHPGGR--FDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDL-PW 1263
+L+MV H VTV+ L+ A S ++DWFLL YQKG+ +P+A+ HI G++E D SLL+FSGG+TR +GP++E ++Y+ VAD + W D +RAR +TE+FA DSFEN++FSICRF+EITG YP KIT++ F FK RFE LHAPALR+P + F Y+G P FD + EGE +A P+ DPYGC L KR R+PF RTPPY L CPEM ELL++CG E S L PW
Sbjct: 1 NLVMVAGHSVTVSGHLQDAGSDESDWFLLGYQKGQGLPQAIHAHITAGIEEARKDPKSLLVFSGGETRAISGPQTEAQAYYHVADAMNLWLTNDGSSVRARTTTEEFATDSFENLMFSICRFREITGEYPKKITVVSFSFKRRRFETLHAPALRWPADRFAYIGVDPPASTGFDLQRSTEGESKNAAAPFAQDPYGCHTA-VLQEKRNSRNPFQRTPPYGLSCPEMKELLQFCGPEFISVQLIPW 244
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A448Z0J1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0J1_9STRA) HSP 1 Score: 253 bits (647), Expect = 8.590e-76 Identity = 126/242 (52.07%), Postives = 161/242 (66.53%), Query Frame = 1
Query: 556 MVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGKP---DLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHPGGR--FDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGD-LPW 1263
MV H VTV++ L ADS + DWFLL YQKG+ +P+A+ HI G++E D +LL+FSGG+TR +GP +E ++Y+ VAD + W +RAR +TE+FA DSFEN +FSI RF+E+TG+YP KIT + F FK RFE LHAPALR+P E F YVG P FD +AEGER +A P+ DPYGC + L KR+ R+PF RTPPY L CP+M LL YCG EL D +PW
Sbjct: 1 MVAGHSVTVSDHLRDADSDEKDWFLLSYQKGRGLPQAIHAHIAAGIEEARKDPEALLVFSGGETRASSGPHTEAQAYYHVADSMNLWPSDPGSSVRARTTTEEFATDSFENFMFSIARFREVTGTYPKKITAVSFSFKRRRFETLHAPALRWPSERFVYVGVDPPASTGFDLEQSAEGERKNAAAPFEQDPYGCHSE-VLQEKRKSRNPFKRTPPYPLSCPDMKYLLGYCGPELVPSDRVPW 241
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A1Z5JCQ7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCQ7_FISSO) HSP 1 Score: 256 bits (653), Expect = 1.520e-75 Identity = 136/302 (45.03%), Postives = 190/302 (62.91%), Query Frame = 1
Query: 394 ILGLLATLVRVRARCATAFAD------DWMGLSHENRA--IHTGPRAMFVGSRASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWW-GKPDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHPGGR--FDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGD-LPW 1263
I G L T++ A T +A W+GL R I + G AS +LI+V H VT++ LE A+ + DWFLLDYQ+ + +P A+VGHI+ G+ + D SLL+FSGG+TR GP++EG SY+ V D W + +RAR TEDFA DSFEN++FSICRF+E+TGSYP IT++ F FK+ RF+ +HA ALR+PP F+Y+G P F A +GE ++++P++ DPYGC + L KR++R+PF RTPPY+L CPEMS+LL +CG++L D +PW
Sbjct: 23 IFGSLLTILAFVAYTTTIWAPMVAQDHAWVGLRTIQRKKWISNSAQPFNTGGLAS-SAKNLIIVAGHSVTISGHLEDANQDENDWFLLDYQRHRGLPEAIVGHIRAGIAAAQKDPTSLLVFSGGETRAATGPETEGASYYRVTDAMQLWPSQSTVRARTITEDFATDSFENLMFSICRFREVTGSYPDTITVVSFSFKQTRFQTMHAKALRWPPNRFQYIGVDPSASTGFVLEEAMKGELENSVKPFQSDPYGCHSK-ILQEKRKQRNPFSRTPPYTLSCPEMSDLLRFCGSDLIPLDKVPW 322
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A2R5GD88_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD88_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.640e-75 Identity = 128/278 (46.04%), Postives = 175/278 (62.95%), Query Frame = 1
Query: 451 ADDWMGLSHENRAIHTGPRAMFVGSRASRELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWGK---PDLRARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHPGGRFDHAAAAE---GERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFS-GDLPW 1263
ADD++ H A+R +LI+V CH +TV ESLEG D RD W L+DYQK +P+A GHI+ G++ D ++L++FSGG+TR AGPKSE SYFFVADH+ WW ++R RA+ E+++ DS EN+LFS+CRF E++GSYP +T++G+ FK+ERF LH ALR+P E+FRYVG P A + E ++L P+R DPYGC + L KR +R+PF R P + L CPE+S LL YC +L+ G+LPW
Sbjct: 29 ADDFVVQRHGVSVRSPSAELAPFDRTAARSARNLILVACHSITVGESLEGVDVRDDRWMLVDYQKHASMPQAFTGHIRKGIELALEDPHALVIFSGGQTRLHAGPKSEANSYFFVADHFGWWSSRAAKEVRPRAALEEYSTDSLENLLFSLCRFHELSGSYPKHVTVVGYTFKQERFRDLHRAALRYPLESFRYVGVDPDTNAFRARLPQLEFFESTASLAPFREDPYGCHSE-VLRTKRVDRNPFSRQPGFILSCPEISTLLRYCERKLYPVGELPW 305
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Match: A0A812GAR4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812GAR4_9DINO) HSP 1 Score: 255 bits (652), Expect = 6.190e-75 Identity = 126/265 (47.55%), Postives = 173/265 (65.28%), Query Frame = 1
Query: 538 ELTHLIMVPCHGVTVTESLEGADSRDADWFLLDYQKGKDVPRALVGHIQGGLDELEADKNSLLLFSGGKTRGPAGPKSEGESYFFVADHYDWWG----KPDL-----------------RARASTEDFARDSFENVLFSICRFKEITGSYPTKITIIGFDFKEERFEGLHAPALRFPPEAFRYVGQHP--GGRFDHAAAAEGERVSALEPYRLDPYGCAAGGALANKRQERDPFHRTPPYSLVCPEMSELLEYCGTELFSGDLPW 1263
+L+HL+MV H V + +SLE +++DWFL YQ+G+D+P+ALV HI+ G++ D +LL+FSGG+TR AGP++EG SY+ VA+++DWWG +PDL RA TE+FA DSF+NVLFS+CRFKE+ G YP ++TI+ F FK++RF LH ALRFP F Y+G P G RFD A GE +A + ++ DPYGC + L KR+ R+PF RT PY L CPE+ LL++CG ++F G LPW
Sbjct: 59 QLSHLVMVAGHAVVMADSLEHIVHKESDWFLEAYQRGQDLPQALVSHIKAGVEAAALDPRALLIFSGGQTRAAAGPRNEGWSYYRVAEYFDWWGYSANRPDLLREAQQRTQRTSTYLPVAQRAVTEEFALDSFQNVLFSLCRFKEVVGRYPDRVTIVSFTFKKQRFSELHRGALRFPSARFSYIGIQPPPGSRFDLVKAESGEHEAA-KLFQSDPYGCHSQ-TLVEKRRARNPFQRTTPYLLSCPELKALLQWCGPDIFRGALPW 321 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig200.89.1 >prot_P-littoralis_Contig200.89.1 ID=prot_P-littoralis_Contig200.89.1|Name=mRNA_P-littoralis_Contig200.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=395bp MQQHRTVSEPAGLRRLLRRDHNRRTNKTGGIPAAPPAGILHSMSTMDSHDback to top mRNA from alignment at P-littoralis_Contig200:280118..285258+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig200.89.1 ID=mRNA_P-littoralis_Contig200.89.1|Name=mRNA_P-littoralis_Contig200.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5141bp|location=Sequence derived from alignment at P-littoralis_Contig200:280118..285258+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig200:280118..285258+ >mRNA_P-littoralis_Contig200.89.1 ID=mRNA_P-littoralis_Contig200.89.1|Name=mRNA_P-littoralis_Contig200.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1185bp|location=Sequence derived from alignment at P-littoralis_Contig200:280118..285258+ (Pylaiella littoralis U1_48)back to top |