mRNA_P-littoralis_Contig200.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.40.1
Unique NamemRNA_P-littoralis_Contig200.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:163612..164370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size672
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789981.0458488-UTR-P-littoralis_Contig200:163611..1637371680789981.0458488-UTR-P-littoralis_Contig200:163611..163737Pylaiella littoralis U1_48UTRP-littoralis_Contig200 163612..163737 -
1680789981.074955-UTR-P-littoralis_Contig200:164271..1643701680789981.074955-UTR-P-littoralis_Contig200:164271..164370Pylaiella littoralis U1_48UTRP-littoralis_Contig200 164272..164370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789981.0550776-CDS-P-littoralis_Contig200:163737..1639751680789981.0550776-CDS-P-littoralis_Contig200:163737..163975Pylaiella littoralis U1_48CDSP-littoralis_Contig200 163738..163975 -
1680789981.065987-CDS-P-littoralis_Contig200:164062..1642711680789981.065987-CDS-P-littoralis_Contig200:164062..164271Pylaiella littoralis U1_48CDSP-littoralis_Contig200 164063..164271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.40.1prot_P-littoralis_Contig200.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 163738..164271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.40.1

>prot_P-littoralis_Contig200.40.1 ID=prot_P-littoralis_Contig200.40.1|Name=mRNA_P-littoralis_Contig200.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MSCCLVVFWCKFYLRTDSTQVNGKCRRVGACCVGCCQGRGFACDCFGRVH
WLASWKTPRTHATPLLAVHAFGPFFCRWSDVREKDAAQATPASSLPFSAS
WMPSRRRYCCTYDIRVCASWLSDQCPGDFRFRVFIFLFQRFPPPARRT*
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mRNA from alignment at P-littoralis_Contig200:163612..164370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.40.1 ID=mRNA_P-littoralis_Contig200.40.1|Name=mRNA_P-littoralis_Contig200.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig200:163612..164370- (Pylaiella littoralis U1_48)
GTTTTTTAAGACCCACTCCCTTCTCTGTTGCTCGGCCCTGTTTTGTTTTT
CTCCGCTCGGACCAAACGCGAAAGATGGGCGGTCTCCTTCCAGGCTGTAA
TGTCTTGCTGTCTCGTTGTATTTTGGTGTAAGTTTTATTTGCGGACTGAT
TCAACACAGGTCAACGGAAAGTGTCGAAGAGTCGGCGCCTGTTGTGTGGG
GTGCTGCCAGGGGAGGGGCTTTGCTTGTGACTGCTTTGGTCGTGTGCATT
GGCTGGCGTCTTGGAAAACACCACGTACTCACGCCACACCATTGTTGGCG
GTTCACGCGTAGAGTTTTAACAGAGAAGCAAAACAAAAAACCGAACGAAC
GAACGAACGTCGCATGAAAGAGGGTTGCGGGAACTATGGAGTTTTTTTCG
GACCCTTCTTCTGCAGGTGGTCGGATGTGCGGGAGAAAGACGCGGCGCAA
GCTACCCCAGCTTCCTCCCTTCCCTTCTCTGCGTCTTGGATGCCTTCTCG
TAGGCGCTACTGCTGTACATATGATATACGTGTGTGTGCGTCGTGGCTAT
CAGATCAGTGCCCTGGGGATTTTCGCTTCCGGGTGTTTATTTTTTTATTT
CAAAGATTCCCCCCACCTGCACGGCGCACATGATTTTGATTGGGTGACTA
AATTATAGTTTTTTTTTTCCTTTGTTTTTTCCCTCCTAGCACGATATGTG
CCTGGTTTTGTGACCACGGGCTAGATTGCGATGGTGGTGAGCTAATGTGA
GAACCATCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:163612..164370-

>mRNA_P-littoralis_Contig200.40.1 ID=mRNA_P-littoralis_Contig200.40.1|Name=mRNA_P-littoralis_Contig200.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig200:163612..164370- (Pylaiella littoralis U1_48)
ATGTCTTGCTGTCTCGTTGTATTTTGGTGTAAGTTTTATTTGCGGACTGA
TTCAACACAGGTCAACGGAAAGTGTCGAAGAGTCGGCGCCTGTTGTGTGG
GGTGCTGCCAGGGGAGGGGCTTTGCTTGTGACTGCTTTGGTCGTGTGCAT
TGGCTGGCGTCTTGGAAAACACCACGTACTCACGCCACACCATTGTTGGC
GGTTCACGCTTTCGGACCCTTCTTCTGCAGGTGGTCGGATGTGCGGGAGA
AAGACGCGGCGCAAGCTACCCCAGCTTCCTCCCTTCCCTTCTCTGCGTCT
TGGATGCCTTCTCGTAGGCGCTACTGCTGTACATATGATATACGTGTGTG
TGCGTCGTGGCTATCAGATCAGTGCCCTGGGGATTTTCGCTTCCGGGTGT
TTATTTTTTTATTTCAAAGATTCCCCCCACCTGCACGGCGCACATGA
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