mRNA_P-littoralis_Contig200.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.24.1
Unique NamemRNA_P-littoralis_Contig200.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.930e-12
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            G LRCNMLPSKVERMMFIRLNRHLVAEVRELDAAV ++KA
Sbjct:  587 GQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKA 626
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.000e-12
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            G LRCNMLPSKVERMMFIRLNRHLVAEVRELDAAV ++KA
Sbjct:  782 GQLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVVKAKA 821
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.200e-11
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKAT 266
            G LRC +LPSK ER MFIRLNRHLVAEVRELDAAV Q+KAT
Sbjct:  376 GQLRCKILPSKFERTMFIRLNRHLVAEVRELDAAVAQAKAT 416
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.130e-10
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            GHLRCNML  KVERMM IRLNRHLV EVRELDAAV  ++A
Sbjct:  205 GHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARA 244
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.300e-9
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            GHLRCNML  KVERMM IRLNRHLV EVRELDAAV  ++A
Sbjct:  770 GHLRCNMLSRKVERMMLIRLNRHLVDEVRELDAAVSLARA 809
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.040e-8
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            G LRCNML  KVERMM IRLNRHL+AEVR LDAAV Q++A
Sbjct:  465 GTLRCNMLARKVERMMLIRLNRHLLAEVRALDAAVAQARA 504
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BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.180e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:  144 GHLRCNMLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKA 263
            G L CNML  +VERMM +RLN+HL+AEVR  DAAV  ++A
Sbjct:  583 GDLCCNMLSHRVERMMLVRLNKHLLAEVRAYDAAVAWARA 622
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JTB8_9PHAE1.930e-1290.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE2.000e-1290.00Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAS2_9PHAE5.200e-1182.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJT6_9PHAE6.130e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.300e-980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE1.040e-877.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE3.180e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:106046..106589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size469
Hectar predicted targeting categorysignal anchor
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789980.9891446-UTR-P-littoralis_Contig200:106045..1060531680789980.9891446-UTR-P-littoralis_Contig200:106045..106053Pylaiella littoralis U1_48UTRP-littoralis_Contig200 106046..106053 -
1680789981.0167365-UTR-P-littoralis_Contig200:106428..1065891680789981.0167365-UTR-P-littoralis_Contig200:106428..106589Pylaiella littoralis U1_48UTRP-littoralis_Contig200 106429..106589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789980.9981122-CDS-P-littoralis_Contig200:106053..1062481680789980.9981122-CDS-P-littoralis_Contig200:106053..106248Pylaiella littoralis U1_48CDSP-littoralis_Contig200 106054..106248 -
1680789981.0070825-CDS-P-littoralis_Contig200:106323..1064281680789981.0070825-CDS-P-littoralis_Contig200:106323..106428Pylaiella littoralis U1_48CDSP-littoralis_Contig200 106324..106428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.24.1prot_P-littoralis_Contig200.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 106054..106428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.24.1

>prot_P-littoralis_Contig200.24.1 ID=prot_P-littoralis_Contig200.24.1|Name=mRNA_P-littoralis_Contig200.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MLPSKVERMMFIRLNRHLVAEVRELDAAVEQSKATTKAATGDSRSLGLHG
AEEATTLYCSSFLFFFFVCFFVFFLIFWLFLFSSRVPEYALSSWHVPGF*
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mRNA from alignment at P-littoralis_Contig200:106046..106589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.24.1 ID=mRNA_P-littoralis_Contig200.24.1|Name=mRNA_P-littoralis_Contig200.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=544bp|location=Sequence derived from alignment at P-littoralis_Contig200:106046..106589- (Pylaiella littoralis U1_48)
CCAGAGTGCGTGCGGTCCAGCAGAACCAGAAAGATGGCAGCTGTACAGGG
GAATGCCGGTAGTACTAATACTAACAGCAGCAGCAGTGTCGAGGGTGCTG
GTGCTGCTGGCGATTCGTTGGGTGGGAATGCAAATGAACCGGTGGCCACC
TACGCTGCAATATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATCAGG
CTGAACAGGCACTTGGTCGCCGAGGTCCGCGAGCTGGACGCTGCAGTCGA
GCAGTCGAAAGCTACGGCAGCCAAGACCGCACAGAGCTCAATGGCTGCTC
AGGAGGAGAGGGCGAACCAGACGATTGACGTTTCCCTATAGACGAAAGCG
GCTACGGGTGACAGCAGAAGTCTGGGTTTGCATGGGGCCGAGGAAGCAAC
AACACTCTATTGTAGTAGTTTTCTCTTCTTTTTTTTTGTTTGTTTTTTTG
TTTTTTTTCTTATCTTCTGGCTTTTCTTGTTTTCTTCGAGAGTACCAGAG
TACGCCTTGTCGTCTTGGCATGTTCCTGGTTTTTGATCGCATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:106046..106589-

>mRNA_P-littoralis_Contig200.24.1 ID=mRNA_P-littoralis_Contig200.24.1|Name=mRNA_P-littoralis_Contig200.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig200:106046..106589- (Pylaiella littoralis U1_48)
ATGCTTCCAAGCAAGGTGGAGCGCATGATGTTCATCAGGCTGAACAGGCA
CTTGGTCGCCGAGGTCCGCGAGCTGGACGCTGCAGTCGAGCAGTCGAAAG
CTACGACGAAAGCGGCTACGGGTGACAGCAGAAGTCTGGGTTTGCATGGG
GCCGAGGAAGCAACAACACTCTATTGTAGTAGTTTTCTCTTCTTTTTTTT
TGTTTGTTTTTTTGTTTTTTTTCTTATCTTCTGGCTTTTCTTGTTTTCTT
CGAGAGTACCAGAGTACGCCTTGTCGTCTTGGCATGTTCCTGGTTTTTGA
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