mRNA_P-littoralis_Contig200.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.20.1
Unique NamemRNA_P-littoralis_Contig200.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:81602..83339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1031
Hectar predicted targeting categoryother localisation
Exons3
Cds size1029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789980.9379277-CDS-P-littoralis_Contig200:81602..818991680789980.9379277-CDS-P-littoralis_Contig200:81602..81899Pylaiella littoralis U1_48CDSP-littoralis_Contig200 81603..81899 -
1680789980.9499712-CDS-P-littoralis_Contig200:81936..820471680789980.9499712-CDS-P-littoralis_Contig200:81936..82047Pylaiella littoralis U1_48CDSP-littoralis_Contig200 81937..82047 -
1680789980.958915-CDS-P-littoralis_Contig200:82718..833391680789980.958915-CDS-P-littoralis_Contig200:82718..83339Pylaiella littoralis U1_48CDSP-littoralis_Contig200 82719..83339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.20.1prot_P-littoralis_Contig200.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 81603..83339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.20.1

>prot_P-littoralis_Contig200.20.1 ID=prot_P-littoralis_Contig200.20.1|Name=mRNA_P-littoralis_Contig200.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=343bp
TTSTSAAAAAAAAAARWLNPSAMTMETPTAASAKAASKPQPQKMGERKNN
EMEQKQPFRGAPASTATSTSAAAAAAAARLLNPSAMAMETPTAASAKVAS
KPQAQQMGERKNNKMELKQPFRRAPAIATANATTNPTTPPPSPAAIATAA
ATATATCTAACTAASTASPCEVEDKEGMGAVAAGKAPPPPDSIKREAFGS
TLTARQWVGSPRLKPPRPFSGRTGASAASSCPTARETRARVCGRLPGGGF
LGAPVRGGRRRLLSGLGVRRLEHCQGVRRRAAVAAGRAAAGASLVVGASE
AGVLASAAGGAGGGVGFGVDGVNEADIEISDRRSRRKWPSGRG
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mRNA from alignment at P-littoralis_Contig200:81602..83339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.20.1 ID=mRNA_P-littoralis_Contig200.20.1|Name=mRNA_P-littoralis_Contig200.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1738bp|location=Sequence derived from alignment at P-littoralis_Contig200:81602..83339- (Pylaiella littoralis U1_48)
ACGACGTCAACATCAGCAGCAGCGGCCGCAGCAGCAGCAGCAGCAAGATG
GTTGAACCCGTCTGCGATGACGATGGAGACGCCGACGGCGGCGTCAGCAA
AAGCGGCGTCGAAGCCGCAACCGCAAAAGATGGGGGAGAGGAAAAACAAC
GAGATGGAGCAAAAACAACCGTTTCGCGGAGCACCAGCATCGACCGCAAC
GTCAACATCGGCAGCAGCGGCCGCTGCAGCAGCAAGATTGTTGAACCCGT
CTGCGATGGCGATGGAGACGCCGACGGCGGCGTCAGCAAAAGTGGCGTCG
AAGCCGCAAGCACAACAGATGGGGGAGAGGAAAAACAACAAGATGGAGCT
AAAGCAGCCGTTTCGCAGAGCCCCGGCGATCGCGACAGCGAACGCAACGA
CGAACCCGACCACGCCCCCACCGTCACCCGCAGCTATAGCGACAGCTGCA
GCGACAGCTACAGCGACCTGTACTGCGGCATGTACTGCGGCATCTACAGC
AAGCCCCTGCGAGGTGGAGGACAAGGAGGGCATGGGGGCGGTGGCAGCAG
GCAAGGCTCCTCCTCCTCCGGATTCCATCAAGAGGGAGGCGTTTGGATCG
ACGCTGACGGCACGCCAATGGGTAAGCAAGTTACACGACGGAGAAGATAA
CGCGAAGCAACCCCGGCGGTACTCCGCGCGTCCCCGAAAACAGCAGGCCC
TTTCCATCTTAGATCTTGCGTCATTATTCTCGTAGGCGGTGTGGTGTACG
ACACAACTATTTTCGACTGCTCAAGGTTCGCATGAGGAATAACACGCTCA
AAATTGAGGGAGGTAGTTCTGGTTTGCCCAGTTTGCCCTCTGTGCGCGCT
CATTCCCGCTCAGTCGATGTAAGTACGTGCGTACAAGCACGTGTTTGTGG
TCTCTGCGCACACTCTTGCTACTCCGACCTATGCTTCCCTTTCGTTCGAA
ATTACGCGACATAGCTGAACCCCAATATGCCATGGCCGCCGGGAAGACTT
ACCGGGGATTTCCTCCGAGGTATGCCCGTAATCTAACCGAGGCGAGTGTT
CGGAAGACTAGTACAGAACCTCCCCCCCCCCCCCCCCCCCCGTGTGCGGT
TGTTCCCCCCCCTTCCTTCTCCCCCCCCAAAAAAGAAAAAAAAAACTTAT
TTCCCTTTCGCTTCATGACCGACTCGCTTTTCTCTTCCTCCTCCCGCTCG
TTCGCGGCCGACCGGCTTCGCTCTGTGCATGCACCCTCTTCTGCACTCAA
CGCTCACTCGCTCCGTCAATAAATCTACCGCATGCTCCCCAGGTCGGATC
CCCCCGCCTCAAGCCTCCTCGTCCCTTCTCCGGCCGGACGGGAGCCTCTG
CGGCGTCTTCCTGCCCCACCGCCCGCGAAACCAGGGCAAGGGTCTGCGGC
CGCGGAAGAAGCCGATGAGCGAGGCCAATGGCCTGGGCACCTTCCTGGAG
GGGGCTTCCTCGGCGCGCCTGTCCGCGGTGGCCGCCGCCGACTTCTCTCG
GGCCTGGGTGTCCGGCGCCTGGAGCACTGTCAGGGAGTGCGTCGACGTGC
AGCCGTCGCCGCGGGTCGGGCCGCCGCCGGCGCGTCTCTCGTCGTCGGAG
CTAGCGAAGCCGGCGTACTGGCAAGTGCGGCCGGAGGAGCAGGCGGCGGT
GTGGGGTTTGGCGTCGACGGAGTGAATGAAGCAGATATTGAGATCTCGGA
TCGTCGATCCCGGCGCAAATGGCCGAGCGGGCGGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:81602..83339-

>mRNA_P-littoralis_Contig200.20.1 ID=mRNA_P-littoralis_Contig200.20.1|Name=mRNA_P-littoralis_Contig200.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1029bp|location=Sequence derived from alignment at P-littoralis_Contig200:81602..83339- (Pylaiella littoralis U1_48)
ACGACGTCAACATCAGCAGCAGCGGCCGCAGCAGCAGCAGCAGCAAGATG
GTTGAACCCGTCTGCGATGACGATGGAGACGCCGACGGCGGCGTCAGCAA
AAGCGGCGTCGAAGCCGCAACCGCAAAAGATGGGGGAGAGGAAAAACAAC
GAGATGGAGCAAAAACAACCGTTTCGCGGAGCACCAGCATCGACCGCAAC
GTCAACATCGGCAGCAGCGGCCGCTGCAGCAGCAAGATTGTTGAACCCGT
CTGCGATGGCGATGGAGACGCCGACGGCGGCGTCAGCAAAAGTGGCGTCG
AAGCCGCAAGCACAACAGATGGGGGAGAGGAAAAACAACAAGATGGAGCT
AAAGCAGCCGTTTCGCAGAGCCCCGGCGATCGCGACAGCGAACGCAACGA
CGAACCCGACCACGCCCCCACCGTCACCCGCAGCTATAGCGACAGCTGCA
GCGACAGCTACAGCGACCTGTACTGCGGCATGTACTGCGGCATCTACAGC
AAGCCCCTGCGAGGTGGAGGACAAGGAGGGCATGGGGGCGGTGGCAGCAG
GCAAGGCTCCTCCTCCTCCGGATTCCATCAAGAGGGAGGCGTTTGGATCG
ACGCTGACGGCACGCCAATGGGTCGGATCCCCCCGCCTCAAGCCTCCTCG
TCCCTTCTCCGGCCGGACGGGAGCCTCTGCGGCGTCTTCCTGCCCCACCG
CCCGCGAAACCAGGGCAAGGGTCTGCGGCCGCCTTCCTGGAGGGGGCTTC
CTCGGCGCGCCTGTCCGCGGTGGCCGCCGCCGACTTCTCTCGGGCCTGGG
TGTCCGGCGCCTGGAGCACTGTCAGGGAGTGCGTCGACGTGCAGCCGTCG
CCGCGGGTCGGGCCGCCGCCGGCGCGTCTCTCGTCGTCGGAGCTAGCGAA
GCCGGCGTACTGGCAAGTGCGGCCGGAGGAGCAGGCGGCGGTGTGGGGTT
TGGCGTCGACGGAGTGAATGAAGCAGATATTGAGATCTCGGATCGTCGAT
CCCGGCGCAAATGGCCGAGCGGGCGGGGG
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