mRNA_P-littoralis_Contig20.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.8.1
Unique NamemRNA_P-littoralis_Contig20.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:36994..37681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size689
Hectar predicted targeting categorysignal anchor
Exons1
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.4712517-UTR-P-littoralis_Contig20:36993..370721680789972.4712517-UTR-P-littoralis_Contig20:36993..37072Pylaiella littoralis U1_48UTRP-littoralis_Contig20 36994..37072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.4836097-CDS-P-littoralis_Contig20:37072..376811680789972.4836097-CDS-P-littoralis_Contig20:37072..37681Pylaiella littoralis U1_48CDSP-littoralis_Contig20 37073..37681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.8.1prot_P-littoralis_Contig20.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 37073..37681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.8.1

>prot_P-littoralis_Contig20.8.1 ID=prot_P-littoralis_Contig20.8.1|Name=mRNA_P-littoralis_Contig20.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MGATWLCNVHWGRARKQLGCRRRVRWRSHRWSRLDFFFAVFWRIFWLGKH
ILCKRGAAVEGGGLMTATVWASSAATAATAVTSMVPVMAAATAAGTETRV
IGPTTAATAGAPTGAGLLTAASDSPLIEGNCLARPSLRERGGKTMWRRRD
YEEACGYSNCSRGHTPSARILHPPKAIIFSRASSLWAPAAGGGSGYHQSQ
QFL
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mRNA from alignment at P-littoralis_Contig20:36994..37681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.8.1 ID=mRNA_P-littoralis_Contig20.8.1|Name=mRNA_P-littoralis_Contig20.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=688bp|location=Sequence derived from alignment at P-littoralis_Contig20:36994..37681+ (Pylaiella littoralis U1_48)
TTCCAGGCTGAGGCTGACGAAGCGGCGAGATTAGAGGTCGGCATCCCGGA
AGCAGCGACAGCAGTAGAAACACGAGGCGATGGGGGCCACTTGGCTCTGC
AATGTACACTGGGGTCGGGCGAGAAAGCAGCTAGGTTGCAGGCGGAGAGT
ACGGTGGAGGAGTCATCGCTGGAGCCGGCTGGACTTCTTTTTCGCCGTAT
TTTGGAGGATATTTTGGTTGGGGAAACACATCCTTTGCAAACGAGGGGCA
GCGGTGGAAGGAGGAGGGCTGATGACCGCGACGGTATGGGCATCGTCAGC
GGCGACGGCGGCTACAGCGGTGACGTCGATGGTCCCCGTGATGGCAGCGG
CAACAGCAGCGGGGACAGAAACACGGGTGATAGGCCCAACCACCGCGGCG
ACGGCGGGGGCACCAACAGGGGCGGGGCTGTTGACGGCGGCAAGCGATTC
CCCTTTGATCGAGGGAAACTGCCTCGCGAGACCGAGTTTGAGGGAGCGGG
GAGGAAAAACCATGTGGCGGAGGAGGGATTACGAAGAAGCCTGCGGGTAC
AGCAACTGCAGCAGAGGACACACGCCTTCTGCTAGGATCCTACACCCGCC
CAAGGCCATTATTTTCAGCCGGGCATCCTCTTTATGGGCACCGGCAGCGG
GAGGTGGTAGCGGATATCATCAATCGCAGCAGTTCCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:36994..37681+

>mRNA_P-littoralis_Contig20.8.1 ID=mRNA_P-littoralis_Contig20.8.1|Name=mRNA_P-littoralis_Contig20.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig20:36994..37681+ (Pylaiella littoralis U1_48)
ATGGGGGCCACTTGGCTCTGCAATGTACACTGGGGTCGGGCGAGAAAGCA
GCTAGGTTGCAGGCGGAGAGTACGGTGGAGGAGTCATCGCTGGAGCCGGC
TGGACTTCTTTTTCGCCGTATTTTGGAGGATATTTTGGTTGGGGAAACAC
ATCCTTTGCAAACGAGGGGCAGCGGTGGAAGGAGGAGGGCTGATGACCGC
GACGGTATGGGCATCGTCAGCGGCGACGGCGGCTACAGCGGTGACGTCGA
TGGTCCCCGTGATGGCAGCGGCAACAGCAGCGGGGACAGAAACACGGGTG
ATAGGCCCAACCACCGCGGCGACGGCGGGGGCACCAACAGGGGCGGGGCT
GTTGACGGCGGCAAGCGATTCCCCTTTGATCGAGGGAAACTGCCTCGCGA
GACCGAGTTTGAGGGAGCGGGGAGGAAAAACCATGTGGCGGAGGAGGGAT
TACGAAGAAGCCTGCGGGTACAGCAACTGCAGCAGAGGACACACGCCTTC
TGCTAGGATCCTACACCCGCCCAAGGCCATTATTTTCAGCCGGGCATCCT
CTTTATGGGCACCGGCAGCGGGAGGTGGTAGCGGATATCATCAATCGCAG
CAGTTCCTG
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