mRNA_P-littoralis_Contig20.40.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.40.1
Unique NamemRNA_P-littoralis_Contig20.40.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig20.40.1 vs. uniprot
Match: A0A6H5J557_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J557_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.010e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:   30 FGDRPDDWINPFSLAFVLFGRPAGEQEDVDLKCKVSGG 143
            +G +P+ W++P SL F +FGRPAG  EDVDLK K++ G
Sbjct:  283 YGPKPEHWLHPASLVFAIFGRPAGTNEDVDLKLKMTSG 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J557_9PHAE1.010e-555.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:179177..179557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.5507197-CDS-P-littoralis_Contig20:179176..1795571680789972.5507197-CDS-P-littoralis_Contig20:179176..179557Pylaiella littoralis U1_48CDSP-littoralis_Contig20 179177..179557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.40.1prot_P-littoralis_Contig20.40.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 179177..179557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.40.1

>prot_P-littoralis_Contig20.40.1 ID=prot_P-littoralis_Contig20.40.1|Name=mRNA_P-littoralis_Contig20.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MLNVHVTWLNSATGPTTGSIPSASPSCCSGGPPASKRMWTSNARCLEAAR
QARQQLPRSNRGVRALVLRRKPMGWAGTTWPTWMGPGAGPAVSKVARQLR
RRGMSRTQRQRGRNRVRPPLSLGPRP*
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mRNA from alignment at P-littoralis_Contig20:179177..179557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.40.1 ID=mRNA_P-littoralis_Contig20.40.1|Name=mRNA_P-littoralis_Contig20.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig20:179177..179557+ (Pylaiella littoralis U1_48)
ATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGAC
TGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCGGGCGGCCCGCCGG
CGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGA
CAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGGCGTTGGT
TCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACCTGGCCAACCTGGA
TGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGA
AGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGCGGAACAGAGTAAG
ACCACCGCTAAGTTTAGGGCCGAGGCCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:179177..179557+

>mRNA_P-littoralis_Contig20.40.1 ID=mRNA_P-littoralis_Contig20.40.1|Name=mRNA_P-littoralis_Contig20.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig20:179177..179557+ (Pylaiella littoralis U1_48)
ATGCTCAACGTGCACGTGACGTGGCTAAATTCGGCGACAGGCCCGACGAC
TGGATCAATCCCTTCAGCCTCGCCTTCGTGTTGTTCGGGCGGCCCGCCGG
CGAGCAAGAGGATGTGGACCTCAAATGCAAGGTGTCTGGAGGCGGCAAGA
CAGGCGCGGCAGCAACTGCCGCGGTCGAACCGGGGGGTGCGGGCGTTGGT
TCTGCGGCGAAAGCCCATGGGCTGGGCAGGCACGACCTGGCCAACCTGGA
TGGGGCCGGGGGCGGGGCCGGCGGTCAGCAAAGTCGCGCGGCAGTTAAGA
AGGAGAGGCATGTCGCGAACTCAGAGGCAAAGAGGGCGGAACAGAGTAAG
ACCACCGCTAAGTTTAGGGCCGAGGCCTTGA
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