mRNA_P-littoralis_Contig20.37.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.37.1
Unique NamemRNA_P-littoralis_Contig20.37.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:177080..177839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.2585156-CDS-P-littoralis_Contig20:177079..1771581680789972.2585156-CDS-P-littoralis_Contig20:177079..177158Pylaiella littoralis U1_48CDSP-littoralis_Contig20 177080..177158 +
1680789972.2714906-CDS-P-littoralis_Contig20:177741..1778391680789972.2714906-CDS-P-littoralis_Contig20:177741..177839Pylaiella littoralis U1_48CDSP-littoralis_Contig20 177742..177839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.37.1prot_P-littoralis_Contig20.37.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 177080..177839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.37.1

>prot_P-littoralis_Contig20.37.1 ID=prot_P-littoralis_Contig20.37.1|Name=mRNA_P-littoralis_Contig20.37.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=59bp
WNKSCKLPIPTWLTPKLMGQSTLTDQTNRLYTVDGAIWSKYSEAGKIIKR
DFNLLWDR*
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mRNA from alignment at P-littoralis_Contig20:177080..177839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.37.1 ID=mRNA_P-littoralis_Contig20.37.1|Name=mRNA_P-littoralis_Contig20.37.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=760bp|location=Sequence derived from alignment at P-littoralis_Contig20:177080..177839+ (Pylaiella littoralis U1_48)
TGGAATAAGTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCT
CATGGGCCAGAGCACGCTGACTGACCAAAGTGAGATGCGGAAAGATTTGT
AGGGTGGAGCAGCTGCAGCAGCAGCTGCTGCAGCGGCAGCAGTAACAGCA
GTACCGGTACCAGTGTTTGCGTGCCACAAACTCTCAAGCAGGCTCACACC
AGCTATTTTTCGCCTCTGTGCTGTTTCAGCCTTCGATTGCGAGTTCATCT
GCTGGCACATCCAATAGGGTTTGCTGCACACATCATATCTTGGAATAACT
TTGTCGAGAAAGAAAAAGAAACAACAGCAGTACTGCTGTATCTGATACGT
ATAATTTGCTCGTTCCCGAGGACAGCAGTACAACAGCAGCAGTATATACA
AGACCACGCCTCTGCATCACGAACGACGCACATCCGACGAACCGTGTGCG
TTGTGCGGCAACACTCGTCTACCTGATTTATTATTAATTATTTACATAGT
TTTTTGTTTGTATTGCTGCCCAGTGCTCTGGCTTGTTCATAGCTTGAAGC
CCTTTGCCGAGGGAGACGCTCGAAACCATGCCGACATATCAGTGCTTGAC
GAATAGCCCTCCACCCCGTTGGCCTCCTCGTTACGTCCCGTCACGTTGTT
GCCTCCGTGCAGCTAACAGGCTGTACACAGTTGATGGTGCTATCTGGAGC
AAGTACTCGGAAGCTGGCAAAATTATTAAGAGGGACTTCAACCTCCTCTG
GGACAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:177080..177839+

>mRNA_P-littoralis_Contig20.37.1 ID=mRNA_P-littoralis_Contig20.37.1|Name=mRNA_P-littoralis_Contig20.37.1|organism=Pylaiella littoralis U1_48|type=CDS|length=177bp|location=Sequence derived from alignment at P-littoralis_Contig20:177080..177839+ (Pylaiella littoralis U1_48)
TGGAATAAGTCCTGCAAGCTGCCGATTCCTACGTGGCTGACGCCGAAGCT
CATGGGCCAGAGCACGCTGACTGACCAAACTAACAGGCTGTACACAGTTG
ATGGTGCTATCTGGAGCAAGTACTCGGAAGCTGGCAAAATTATTAAGAGG
GACTTCAACCTCCTCTGGGACAGGTGA
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