mRNA_P-littoralis_Contig20.28.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A6H5L662_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L662_9PHAE) HSP 1 Score: 259 bits (662), Expect = 4.350e-71 Identity = 225/691 (32.56%), Postives = 303/691 (43.85%), Query Frame = 3
Query: 342 LLCITAALTSWAGVVY--GSEGGDGHPEYLAVYSLGVGGSHTLQLGG-APLEERSVEFMVVPSSSADQEGLEEAERASASAWEDLFSGSEAPTSLLNGSSAIPSRSVVYTVPLLTSESSSTFTEAANRPIVEVALAIPVAGAYTLLLNHG--EVPAAMMSPTGEVLVPVVFEEGGHAEEQQDQGAGSTTARQWANALAESFLISLCSFAGIVTVVSSRVAHKINLSLAFLFASGALLATTSSHHPGGDGRAQARGRGRPARRIPAFGCQYHRGYLRSLPPTPRARQQRQPLPPPLVDGAGATAIANKIEAIAVRP-RNDGHGEGEEEVSSGILAGNDSPVVAPAPGVGWGGYKASSLNVDGDGCGDGSDRIVAGEATAFGGIEGTITEDCSDDSRGCEEEEGRRQRRRRPNGDASEVAAEEGKSATAFARSYRMEPGQAPVFAAPSAVNLRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDA-DGGHDH 2393
L C+ TS +G Y S DGH E AVY + G + + + E+ ++ FMVV ++SAD EGL AE + +AW+ SG+E T L G A PS VVY V L P+V V + + +AGAY + L HG EV + SP+G V G+ S T QW N L SF++S+CSFAG++ V + RVA+ I LS AF+FASGALL H +P L AG T + ++ + GH E G G + V P GG+ + DG AG G EG +V+A G ++ A + + Q P A S NLR A R L DV GL P+CWNVV GD+ HNF+DG+T+ AAFL CS TVGWTV A+ ++HE+PHE+ +FMAL+NGGMS+KQA YNFLSAL VLG ++ +L + ++ +S +LL+GSG+FIF+ LSEL+P+AL +H S G V S Q+ K +F +GA+L+G+PLL HCDA GHDH
Sbjct: 12 LACVAPEATSHSGHDYDESSHAEDGHFEVSAVYDVEPGTNSFIAIPAEGRFEQDTLAFMVVLAASADTEGLAGAEEDAEAAWDAYTSGAEDATVLAPGEPATPSTVVVYQVAL-------------EDPLVLVQVEVTIAGAYAVFLEHGAEEVGIVLASPSGVVXXXXXXXXXXXXXXXXXSGSASGT--QWVNGLVASFVVSVCSFAGLLVVANKRVAYSIGLSHAFIFASGALLTAALVH---------------------------------IIPEAMEGLDSSYDNLHDLGLYAGLTVLGGLSVSVVIHGLMESGHSHSPHE---GHSHGGGTETVRPG-----GGHGHHARVSDG-----------AGTTMPLGMAEG------------------------------DKVSAWPGGNSP-HAVQIQADVTQPPSPAESSTDNLRALIAERAGRSLLDVKGLQPVCWNVVIGDLVHNFADGLTIGAAFLTCSATVGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILALGDTLSDKDVSIVLLLGSGSFIFIALSELLPEAL--------------------------VVTHAVSEKGAVAVMCS--------------------------QLLKLGSFLLGAILIGIPLLVDQHCDAAHEGHDH 552
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: D7FLW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLW4_ECTSI) HSP 1 Score: 241 bits (614), Expect = 3.780e-65 Identity = 218/697 (31.28%), Postives = 296/697 (42.47%), Query Frame = 3
Query: 342 LLCITAALTSWAGVVYGSEG-------GDGHPEYLAVYSLGVG-GSHTLQLGGAPLEERSVEFMVVPSSSADQEGLEEAERASASAWEDLFSGSEAPTSLLNGSSAIPSRSVVYTVPLLTSESSSTFTEAANRPIVEVALAIPVAGAYTLLLNHGEVPAAMMSPTGEVLVPVVFEEGGHAEEQQDQGAGSTTARQWANALAESFLISLCSFAGIVTVVSSRVAHKINLSLAFLFASGALLATTSSHHPGGDGRAQARGRGRPARRIPAF--GCQYHRGYLRSLPPTPRARQQRQPLPPPLVDGA---GATAIANKIEAIAVRPRNDGHGEGEEEVSSGILAGNDSPVVAPAPGVGWGGYKASSLNVDGDGCGDGSDRIVAGEATAFGGIEGTITEDCSDDSRGCEEEEGRRQRRRRPNGDASEVAAEEGKSATAFARSYRMEPGQAPVFAAPSAVNLRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDADGGHDH 2393
LL AA TS + +GS G+GH E AVY + G S GG EE + FMVVP++SAD +GLE AE + +AW++ SG+E T L +G SA PS VVY V L P+V V + + AGAY + L HG E G+ TA +W NAL S ++S CSFAGIV V S VA+ I+LS AF+FASGALL H IP G + G L L L G G ++ + A+ + GE + AG GG KAS+ EAT + + E SD+ + ++A +GKS L DV GL+P+CWNV+ GD+ HNF+DGV + AAFL CS T+GWTV A+ ++HE+PHEV +FMAL+NGGMS+ QA +YNFLSAL VLG V+ +L++ ++ I+ +LL+G+G+FIF+ L EL+P AL+ AA A +R G ++ R QV K +F +GA+++G+PLL HC HDH
Sbjct: 13 LLACAAAHTSHSDHDHGSHSXXXXXXEGEGHFEAAAVYDVEAGTNSLAAYPGGGSFEEETFAFMVVPAASADLDGLEGAEEDAEAAWDEYTSGAEDATVLASGESATPSADVVYQVTL-------------EDPLVLVPVDVTAAGAYAVFLEHGSDEEGXXXXXXXXXXXXXXE------------TGTATAGKWGNALVASLVVSACSFAGIVVVASKHVANNIDLSHAFVFASGALLTAALLHI------------------IPEALEGLEESYGSLHDLG---------------LYAGLAVMGGMSLGIVLHALLESGHSHSPGESXXXXXXAVEAGG-------------GGAKASAYT-------------GTSEAT----LPPSPVESNSDNLQAL-------------------ISARKGKS-------------------------------------LLDVKGLEPVCWNVIAGDLVHNFADGVAIGAAFLSCSTTMGWTVAASVVLHEVPHEVADFMALLNGGMSLMQAFVYNFLSALSAVLGTVIILALQDTLSEKDIAIVLLVGAGSFIFIALCELLPGALA--------------VAALVA----------------KRGGGAI----------------------ARSQVLKLGSFLLGAIVIGIPLLFDEHCGTGHDHDH 513
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: D7FLV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV2_ECTSI) HSP 1 Score: 183 bits (464), Expect = 4.840e-47 Identity = 108/254 (42.52%), Postives = 140/254 (55.12%), Query Frame = 3
Query: 1635 QAPVFAAPSAVNLRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDA-DGGHDH 2393
Q P A S NLR R L DV GL P+CWNVV GD+ HNF+DGVT+ AAFL CS T+GWTV A+ ++HE+PHE+ +FMAL+NGGMS+KQA YNFLSAL VLG ++ SL + ++ +S +LL+GSG+FIF+ LSEL+P+AL +V V + GA Q+ K +F +GA+L+GLPLL HCDA GHDH
Sbjct: 153 QPPSPAESSTDNLRALIAEREGRSLLDVKGLQPVCWNVVIGDLVHNFADGVTIGAAFLTCSATIGWTVTASAVLHELPHEIADFMALLNGGMSLKQAFAYNFLSALSAVLGTIIILSLGDTLSDKDVSIVLLLGSGSFIFIALSELLPEAL------------------------------------------AVTHAVSEKGAVA----------MMCSQLLKLGSFVLGAILIGLPLLFDQHCDAAHEGHDH 354
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: D8LNP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNP7_ECTSI) HSP 1 Score: 160 bits (406), Expect = 3.820e-39 Identity = 91/232 (39.22%), Postives = 133/232 (57.33%), Query Frame = 3
Query: 1698 DRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDADGGHDH 2393
+R LFD+ GL P+CWNV+ G++ HNF+DGVT+ AAFL C ++GWT+ A+ ++HEIP E+ +F+AL+ GGMS+KQA L+NFLSAL VLG V+ SLR ++ A +S +LL+GSG+FIF+ L+EL+P AL ++ A +K A + Q++K +F +GA L+G L+ HC+A+G HDH
Sbjct: 196 ERSLFDLKGLKPVCWNVIAGELVHNFADGVTIGAAFLTCGSSMGWTITASTVLHEIPQELADFIALLAGGMSLKQAFLFNFLSALTCVLGAVVILSLRSQLSDADVSVILLLGSGSFIFIALTELLPGAL-------------------------------------------------EVTKAESDKAGGAVMCN---QMKKLGSFVLGAALIGGALIFDQHCEAEG-HDH 374
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A6H5KN39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN39_9PHAE) HSP 1 Score: 160 bits (405), Expect = 7.800e-38 Identity = 91/241 (37.76%), Postives = 131/241 (54.36%), Query Frame = 3
Query: 1668 NLRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDADGGHD 2390
NL + + R LFD GL PICWNV+ GD H+F+ G T+ AAFL C T+GWT+ A+ ++HE+P E+ +F+AL+NGGMS+KQAL +N S + +LG VL L + T I+ +LL+G+G+FIF+GL+EL+P+ALSS +VD G G+ +RK +FA GA+++G+PL+ H HC AD GH+
Sbjct: 322 NLWELVQQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLASGIPAILGAVLILGLGDQFTTFQIAIILLLGAGSFIFIGLTELLPEALSS----------------------------------------TVD------GKGLGD------------SLRKLGSFAFGALVIGIPLMFHAHCHADEGHE 504
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: D7FRW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRW4_ECTSI) HSP 1 Score: 151 bits (382), Expect = 6.770e-35 Identity = 87/236 (36.86%), Postives = 127/236 (53.81%), Query Frame = 3
Query: 1668 NLRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDA 2375
NL + R LFD GL PICWNV+ GD H+F+ G T+ AAFL C T+GWT+ A+ ++HE+P E+ +F+AL+NGGMS+KQAL +N +S + +LG VL +L + T I+ +LL+G+G+FIF+GL+EL+P+ALS DG + +G S+ RK +FA GA+++G+PL+ H HC A
Sbjct: 326 NLLELVEQRKGRALFDFKGLKPICWNVIVGDAVHSFTCGFTIGAAFLSCGSTMGWTITASTLIHEVPSEMADFVALLNGGMSIKQALTWNLVSGIPAILGAVLILALGDQFTNFQIAIILLLGAGSFIFIGLTELLPEALS-----------------LTMDG--------------KGLGDSI---------------------------RKLGSFAFGALIIGIPLMFHAHCHA 503
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A7S4DBT4_HETAK (Hypothetical protein n=8 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBT4_HETAK) HSP 1 Score: 123 bits (308), Expect = 3.720e-25 Identity = 87/255 (34.12%), Postives = 119/255 (46.67%), Query Frame = 3
Query: 1650 AAPSAVNLRDAKRVGADR----GLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGGSSAAISGTDATTAAFAADGSPFTASHNCSVVGRERVGTSVDAGVHQLGAATGEKQKEAKHLHRRGQVRKALAFAVGAVLLGLPLLTHTHCDAD---GGHDH 2393
A P + + D K+ + + + P WNVV GD HN DG+ +A AF GC ++GWT++ A M HEIP E+ +F L++ G+S QALL N S VLG ++ + + A I Y+LL GSG F+FVG +EL+PD LS G+ G+P + +GT R AL FA+GAV++ LPLL H HCDA G HDH
Sbjct: 347 APPQELEVADVKKAAGPKEKRSAAATLAEVRPQAWNVVVGDALHNCLDGMVIAVAFAGCGNSMGWTILGAVMAHEIPQEIADFFVLLDSGLSFVQALLLNLFSGFCAVLGGIIVLTAPG-LDAEGIGYMLLFGSGIFLFVGAAELLPDLLSGRGTG----------------GAP------------KALGT-----------------------------RLAL-FALGAVVVSLPLLAHLHCDAGFLAGAHDH 542
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A7S3Y4U9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4U9_HETAK) HSP 1 Score: 112 bits (280), Expect = 4.950e-25 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 3
Query: 1731 PICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGG 2099
P WNVV GD HN DG+ +A AF GC ++GWT++ A M HEIP E+ +F L++ G+S QAL +N S L V G ++ S +TA I Y+LL GSG F+FVG +EL+P+ L++ G
Sbjct: 20 PQAWNVVLGDGLHNCLDGMVIAVAFAGCGSSMGWTILGAVMSHEIPQEIADFFVLLDSGLSFGQALCFNLFSGLCAVAGGIIVLSTPS-LTAEGIGYMLLFGSGIFLFVGAAELLPELLAAPG 141
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A6V1U7C3_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U7C3_HETAK) HSP 1 Score: 112 bits (279), Expect = 1.360e-21 Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 3
Query: 1659 SAVNLRDA-KRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPDALSSGG 2099
SAV L A RVG RG + P WN+V GD N DG+ +A AF GC ++GW V A M HEIP E+G+F L++ G+S QALL N S + + G ++ L +TA + Y+LL GSG F+F G +EL+P+ L++ G
Sbjct: 371 SAVKLLAALPRVGPVRG------VRPQAWNLVLGDCICNGLDGMVIAVAFAGCDSSMGWIVFGAVMSHEIPQEIGDFFVLIDSGLSFGQALLANLFSGVCAIFGGIIVLLLNSSLTADVVGYMLLFGSGMFLFAGAAELLPELLAAPG 512
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Match: A0A8J2L3S1_9HEXA (Hypothetical protein n=2 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2L3S1_9HEXA) HSP 1 Score: 95.9 bits (237), Expect = 4.470e-17 Identity = 56/156 (35.90%), Postives = 89/156 (57.05%), Query Frame = 3
Query: 1632 GQAPVFAAPSAVN------LRDAKRVGADRGLFDVTGLDPICWNVVCGDIAHNFSDGVTMAAAFLGCSLTVGWTVMAANMMHEIPHEVGNFMALVNGGMSVKQALLYNFLSALFNVLGVVLTFSLREVITAAAISYLLLIGSGTFIFVGLSELVPD 2081
GQ P++ + ++N LR ++RV + G+ + W ++ GD HNF DGV++ AAF T G + A + E PHE+G+F L+N G+SVK+ALL+NFLSAL LG++L L + Y+ + +G F++V L ++VP+
Sbjct: 192 GQIPIYHSTFSLNKLAVEALRSSERVNGEAN-----GIKTVAWVIIFGDGLHNFIDGVSIGAAFT-TDFTTGAVICLAIVCEEFPHELGDFAILINSGLSVKKALLFNFLSALTCYLGLILGIMLGGEFDWSY--YIFAVAAGVFLYVALGDMVPE 339 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig20.28.1 >prot_P-littoralis_Contig20.28.1 ID=prot_P-littoralis_Contig20.28.1|Name=mRNA_P-littoralis_Contig20.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=703bp MLRKAGMSSRHCCRTPFLLCITAALTSWAGVVYGSEGGDGHPEYLAVYSLback to top mRNA from alignment at P-littoralis_Contig20:124807..138094- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig20.28.1 ID=mRNA_P-littoralis_Contig20.28.1|Name=mRNA_P-littoralis_Contig20.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=13288bp|location=Sequence derived from alignment at P-littoralis_Contig20:124807..138094- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig20:124807..138094- >mRNA_P-littoralis_Contig20.28.1 ID=mRNA_P-littoralis_Contig20.28.1|Name=mRNA_P-littoralis_Contig20.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2109bp|location=Sequence derived from alignment at P-littoralis_Contig20:124807..138094- (Pylaiella littoralis U1_48)back to top |