mRNA_P-littoralis_Contig20.218.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.218.1
Unique NamemRNA_P-littoralis_Contig20.218.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:942581..943131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size551
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.6433675-UTR-P-littoralis_Contig20:942580..9426211680789972.6433675-UTR-P-littoralis_Contig20:942580..942621Pylaiella littoralis U1_48UTRP-littoralis_Contig20 942581..942621 +
1680789972.667919-UTR-P-littoralis_Contig20:942966..9431311680789972.667919-UTR-P-littoralis_Contig20:942966..943131Pylaiella littoralis U1_48UTRP-littoralis_Contig20 942967..943131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.6525753-CDS-P-littoralis_Contig20:942621..9429661680789972.6525753-CDS-P-littoralis_Contig20:942621..942966Pylaiella littoralis U1_48CDSP-littoralis_Contig20 942622..942966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.218.1prot_P-littoralis_Contig20.218.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 942622..942966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.218.1

>prot_P-littoralis_Contig20.218.1 ID=prot_P-littoralis_Contig20.218.1|Name=mRNA_P-littoralis_Contig20.218.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MEICDLVNGAQAHIVSSGGKYAVGTETEPVPRNIVPVDRVALHGYGLSTN
CSCECSWYQFCPMSNSDLRCPAWFGVPLVLVSRVPAAEKVNRKSSTYRDT
LMHDKSRPVMCGKF*
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mRNA from alignment at P-littoralis_Contig20:942581..943131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.218.1 ID=mRNA_P-littoralis_Contig20.218.1|Name=mRNA_P-littoralis_Contig20.218.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=551bp|location=Sequence derived from alignment at P-littoralis_Contig20:942581..943131+ (Pylaiella littoralis U1_48)
GAAAAGGAGCCCGCAGTCTTGTCATCGGTGAAATGTTTTGAATGGAAATT
TGTGATTTGGTTAACGGAGCGCAAGCTCACATAGTAAGCAGTGGAGGAAA
ATATGCAGTGGGGACAGAAACTGAACCCGTGCCTCGCAATATAGTTCCTG
TAGATCGTGTAGCGTTGCATGGATACGGATTGTCTACGAACTGCTCGTGC
GAATGCTCATGGTACCAGTTTTGTCCTATGTCAAACTCTGATCTTCGGTG
TCCCGCTTGGTTTGGGGTGCCTCTTGTTTTGGTTTCGCGTGTACCGGCTG
CCGAGAAGGTAAATAGAAAATCAAGCACGTATCGTGATACATTGATGCAT
GACAAATCGAGACCTGTGATGTGTGGTAAGTTTTGAAGCTTCGCAGGCGC
CTCCCCCACCCTAGAAAAACAAAAAGTTGCACCGTTTTTCACGATGCAAG
CAAAAGGAGACCGGGAATGAGATACATGCATGGATGGACAGCATCTCCTC
TCGTTCTGGACTTCCATGTACTTGCGTGTCTTCTGAGTGCCGGAGTTCCA
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:942581..943131+

>mRNA_P-littoralis_Contig20.218.1 ID=mRNA_P-littoralis_Contig20.218.1|Name=mRNA_P-littoralis_Contig20.218.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig20:942581..943131+ (Pylaiella littoralis U1_48)
ATGGAAATTTGTGATTTGGTTAACGGAGCGCAAGCTCACATAGTAAGCAG
TGGAGGAAAATATGCAGTGGGGACAGAAACTGAACCCGTGCCTCGCAATA
TAGTTCCTGTAGATCGTGTAGCGTTGCATGGATACGGATTGTCTACGAAC
TGCTCGTGCGAATGCTCATGGTACCAGTTTTGTCCTATGTCAAACTCTGA
TCTTCGGTGTCCCGCTTGGTTTGGGGTGCCTCTTGTTTTGGTTTCGCGTG
TACCGGCTGCCGAGAAGGTAAATAGAAAATCAAGCACGTATCGTGATACA
TTGATGCATGACAAATCGAGACCTGTGATGTGTGGTAAGTTTTGA
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