mRNA_P-littoralis_Contig20.207.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.207.1
Unique NamemRNA_P-littoralis_Contig20.207.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 4.740e-109
Identity = 183/348 (52.59%), Postives = 210/348 (60.34%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWNRCDIPALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKDGSIKIYDRDSGGLIVDHAEPECGGYTGLAYQYDSSTGCPLLLASTITGGLYVFRLEEEKQEGKESGVGGGVDDGWRNMRAGCGGRLRCLGFVQGCQIL 1044
            +YSCSRDTT+RQWNR  I ALRVFEGHDLACT +ALS DEKTL SGS      AWDV+TG+CT+S KVPRNLVTCL+ L+  PS S                      VVQ               GLR ++TV+GYTFFP+ LD+S+D H+VLT CKGFNG GCETKLWDLR    P+REYTGHTQDTTACVF+ SK+      GAR             E    +      S S  S    IAT SKDG++KIYD   G ++VDH EPECGGYTGLA Q DS TG P+  ASTITGGLY  RLEE+      S  G G            G RLRC+GFV+G  IL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEDEKTLYSGSXXXXXXAWDVQTGQCTSSAKVPRNLVTCLKCLSGGPSSS----------------------VVQXXXXXXXXXXXXXXXGLRSSMTVDGYTFFPLFLDVSSDGHQVLTSCKGFNGAGCETKLWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAR-------------EGGYGLSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEKVATAGTSRTGLGEG----------GLRLRCVGFVRGNPIL 303          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 6.740e-98
Identity = 183/382 (47.91%), Postives = 210/382 (54.97%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWNRCDIPALRVFEGHDLACTDLALSA----------------------------------DEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKDGSIKIYDRDSGGLIVDHAEPECGGYTGLAYQYDSSTGCPLLLASTITGGLYVFRLEEEKQEGKESGVGGGVDDGWRNMRAGCGGRLRCLGFVQGCQIL 1044
            +YSCSRDTT+RQWNR  I ALRVFEGHDLACT +ALS                                   DEK L SGSRDTS+RAWDV+TG+C +S KVPRNLVTCL+ L  S  LSS                     V QGGEDL+LRVWD REGGLRP++T++GYTFFP                           LWDLR    P+REYTGHTQDTTACVF+ SK+     GG  G            EN   V    S+S S  S    IAT SKDG++KIYD   G ++VDH EPECGGYTGLA Q DS TG P+  ASTITGGLY  RLEEE     +S            ++ G G RLRC+GFV+G  IL
Sbjct:    1 MYSCSRDTTVRQWNRSGISALRVFEGHDLACTAIALSEGDVPSQRKILPARQSILSKLFHDDDPPPYEHSLEDEKALYSGSRDTSIRAWDVQTGQCISSAKVPRNLVTCLKCL--SGELSSS--------------------VAQGGEDLKLRVWDAREGGLRPSMTIDGYTFFP---------------------------LWDLRSPGIPVREYTGHTQDTTACVFVTSKE-----GGDDGSGVE--------ENGYGVSPSPSTSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQT---------ELQEG-GLRLRCVGFVRGNPIL 310          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A835ZHR6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.080e-52
Identity = 120/310 (38.71%), Postives = 156/310 (50.32%), Query Frame = 1
Query:    4 YSCSRDTTIRQWNRCDIPALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKDGSIK--IYDRDSGGLIVDHAEPE--CGG-YTGLAYQYDSSTG-------CPLL-LASTITG 894
            YS SRDTT+ QW + + P L  + GH L  + L LSADE  L SGSRDTSVR WDV TG+       PRNLVTCL+ +      +                     VVVQGGEDL+LR+WD R     PA T++G+ +FP+CLD+S D + +LTG KGFN  GCE +LWD R T   ++EY GH QD TAC+   +      +GGA                                    + T SKD +IK  ++ R+SG L+ D AEP   C   +TG  Y    S G        P+L +AS++ G
Sbjct:    7 YSASRDTTLAQWGQGEGP-LATYRGHTLTVSALDLSADETHLWSGSRDTSVRLWDVSTGQQRGMVATPRNLVTCLKCMPGEEGTN---------------------VVVQGGEDLKLRLWDFRTPSSVPAQTLDGFVYFPLCLDVSEDGNYLLTGSKGFNSVGCEGRLWD-RRTGQVVQEYNGHAQDVTACLLAPAA-LAASSGGA------------------------------------VITASKDQTIKARVWGRESGQLLSDFAEPHRLCAATFTGGLYDLQLSEGEAGGETAAPVLSVASSVAG 256          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 5.160e-43
Identity = 107/330 (32.42%), Postives = 150/330 (45.45%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWNRCDI------------PALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRI--------ATVSKDGSIKIYDRDSGGLIVDHAEPECGGYTGLAYQYDSSTGCPLLLASTITGGLYVFRLEEEKQ 930
            IYSCSRDTTI   +                P      GH L  + +A++ DE +LCSG RDT    WD+ TGR  A     +N++TC +++   P                        +VVQG EDL L++WD R     PA +  GY +F +C+D+S D +  LT  KGFNG GCE ++WD R T   L E+ GH QDTT+C FL S                                GSSS+ S  S    +         T SKDGS+K++D  +  ++ +  EP  G +T +    DSST    +LAST    ++ F    +++
Sbjct:   79 IYSCSRDTTIALTSHIASKSSSPSSSSRKQPQPVYLRGHHLNVSTIAVNDDETSLCSGGRDTQTIFWDLTTGRLKAKNTTSQNVITCSKWVPVEP------------------------LVVQGSEDLTLKLWDERTNLRAPAQSFHGYVYFALCVDVSPDGNYFLTSSKGFNGVGCEVRIWD-RRTGKQLYEFNGHQQDTTSCCFLPS------------------------------ATGSSSNDSVTSPADSVRASAIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSIC-AVDSST----VLASTFADEVHQFAFNGDEK 348          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: UPI00109BE923 (WD repeat-containing protein 31 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BE923)

HSP 1 Score: 139 bits (350), Expect = 1.490e-35
Identity = 79/197 (40.10%), Postives = 102/197 (51.78%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWN--RCDIPALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFL 585
            +YS SRD TI+ W    C    +  +EGH L  T + L+ D+  L SGSRD SVR WDV TG+C +  +V RNLV+C++++  S                          VVQ GED  ++VWD R   L PA T     +F  C D S D   +LT   GFN  GCE  LWDLR     + +Y GHTQ  +AC+FL
Sbjct:    3 VYSSSRDKTIKLWKIGDCHQDPIDTYEGHKLVVTGIDLNNDQTVLFSGSRDNSVRLWDVVTGQCISHNEVTRNLVSCVKWIPQSHE------------------------VVQTGEDKMVKVWDTRT--LTPAFTFPPKQYFQTCCDCSDDGKYILTCNNGFNRSGCEATLWDLRQKKQ-VYQYVGHTQTASACIFL 172          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A5D6Y005_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y005_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.430e-35
Identity = 94/286 (32.87%), Postives = 130/286 (45.45%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWNRC--------DIPALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKDGSIKIYDRDSGGLIVDHAEPECGGYTGL 834
            +YSCSRDTTI   +            PA     GH+L    +A++  E TLCSG RDT    WD+ TG+  A     +N+VTC +++   P                        +VVQG EDL L+ WD R     PA    GY +F + +D+S D   +LT  KGFNG GCE ++WD R T   L E++GH QD T+C FL                                  G+S S S         T SKDG++K++D  +  ++ + +EP  G +TGL
Sbjct:  126 LYSCSRDTTIALTSHIAPPSSPSRKQPASVQLRGHNLNVATIAVNDAETTLCSGGRDTQTIFWDLVTGKLKAKNTTSQNVVTCSKWIPLEP------------------------LVVQGSEDLTLKFWDERTELRTPAQIFHGYVYFALSVDVSPDTSYILTSSKGFNGVGCEVRVWD-RRTGKQLLEFSGHQQDATSCCFLP---------------------------------GTSDSQSAIPIP---VTASKDGTVKVWDAAASRVLCEASEPTGGMFTGL 350          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A1V9Z8M6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8M6_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.390e-35
Identity = 95/322 (29.50%), Postives = 139/322 (43.17%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWNRCDIPA------LRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKG-------------FNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVTGGARGXXXXXSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKDGSIKIYDRDSGGLIVDHAEPECGGYTGLAYQYDSSTGCPLLLASTITGGLYVF 909
            +Y+CSRDTTI ++ R D         +  F GH L+ + + ++  E  L SGSRDTSV  WDV T          +N+VTC+ ++    +L                       V QGGEDLR+R+WD R     P  T+EGY +FP+ LD+S D + +LT  KG             FNG GCE ++WD R T   + E  GH QD TAC ++  +++                                           + T SKD S+++++  SG L+    +   G +T L        G   +  S+ TG L V+
Sbjct:   97 LYACSRDTTISRY-RLDFDGAVNTVKMESFAGHSLSVSAITINGSETQLASGSRDTSVSLWDVATTTQLQHTTTSQNIVTCMAWVPIHDTL-----------------------VAQGGEDLRVRIWDSR-AWKSPVQTIEGYVYFPLSLDVSDDGNYILTSSKGTILSWICWLMPLGFNGVGCEGRVWD-RRTGKQVCEMAGHLQDATACSYIKQRNEY------------------------------------------VLTASKDSSLRVWNSASGALVSSTYDHALGMFTALTSLPPDDAGIVRIFTSSFTGHLAVY 350          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A485KVW2_9STRA (Aste57867_12386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVW2_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.270e-34
Identity = 81/216 (37.50%), Postives = 109/216 (50.46%), Query Frame = 1
Query:    1 IYSCSRDTTIRQW------NRCDIPALRV------FEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVT 612
            +YSCSRDTTI +       N    P+         + GH L  + LA++  E TL SGSRDT V  WDV T          +N+VTC+ ++    +                       VV QGGEDLR+R+WD R     P  T+EGY +FP+ +  S D H +LT  KGFN  GCE ++WD R T   + E  GH QD TAC ++  ++ EG+T
Sbjct:  117 LYSCSRDTTIARHTFGSLANDPTTPSPTAVTTHPPYHGHTLTVSALAINESESTLASGSRDTGVSLWDVATSMRRQHTITSQNIVTCMAWVPRDAN-----------------------VVAQGGEDLRVRLWDAR-AWKAPTQTIEGYIYFPLSIACSDDGHYLLTSSKGFNAVGCEGRVWD-RRTGKQVAEMRGHAQDATACAYIPGRNHEGIT 307          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: A0A067CE75_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CE75_SAPPC)

HSP 1 Score: 139 bits (349), Expect = 1.350e-34
Identity = 81/208 (38.94%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    1 IYSCSRDTTIRQWN--RCDIPAL--RVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVT 612
            +Y+CSRDTTI Q      D+PA   + F GH L+ + +A++A E  L SGSRDT    WDV TG         +N+VTC+ ++    +L                       V QGGEDL +R+WD R     PA T++GY +FP+ +D S D + +LT  KGFNG GCE ++WD R T   + E   H QD TAC ++  K+   VT
Sbjct:   93 LYACSRDTTISQQAIASSDVPAAAPQSFTGHTLSVSAIAINAPETHLASGSRDTGTSLWDVTTGTRVQHTTTSQNIVTCMTWVPQCETL-----------------------VAQGGEDLCVRLWDARSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWD-RRTGKLVTEMHVHLQDATACAYVRHKNAFAVT 275          
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Match: T0QNJ3_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QNJ3_SAPDV)

HSP 1 Score: 138 bits (347), Expect = 3.680e-34
Identity = 80/207 (38.65%), Postives = 111/207 (53.62%), Query Frame = 1
Query:    1 IYSCSRDTTIRQW--NRCDIP-ALRVFEGHDLACTDLALSADEKTLCSGSRDTSVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESXXXXXXXXXXXXXXVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADCHEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDKEGVT 612
            +Y+CSRDTTI Q   +  D P A + F GH L+ + LA++A E  L SGSRDT    WDV T          +N+VTC+ ++    +L                       + QGGEDL +R+WD R     PA T++GY +FP+ +D S D + +LT  KGFNG GCE ++WD R T   + E  GH QD +AC ++  K+   VT
Sbjct:   98 LYACSRDTTISQHVLSSSDAPTAPQSFTGHTLSVSALAINAAESNLASGSRDTGTSLWDVTTRARVQHTTTSQNIVTCMTWVPQCETL-----------------------LAQGGEDLCVRLWDTRSWK-SPAQTIQGYVYFPLSIDASDDGNYLLTSSKGFNGVGCEGRVWD-RRTGKLVTEMHGHLQDASACAYMRHKNAYAVT 279          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJK8_ECTSI4.740e-10952.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE9_9PHAE6.740e-9847.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZHR6_9STRA3.080e-5238.71WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
K3WSF6_GLOUD5.160e-4332.42Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI00109BE9231.490e-3540.10WD repeat-containing protein 31 n=1 Tax=Exaiptasia... [more]
A0A5D6Y005_9STRA4.430e-3532.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9Z8M6_9STRA6.390e-3529.50Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KVW2_9STRA1.270e-3437.50Aste57867_12386 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CE75_SAPPC1.350e-3438.94Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
T0QNJ3_SAPDV3.680e-3438.65Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:892466..897352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LJK8
Preferred nameWDR31
PFAMsDUF4496,WD40
Model size1047
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.77e-110
EggNOG OGsKOG0279@1|root,KOG0279@2759|Eukaryota
Descriptionpositive regulation of Golgi to plasma membrane protein transport
Cds size1047
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789980.1159334-CDS-P-littoralis_Contig20:892465..8925801680789980.1159334-CDS-P-littoralis_Contig20:892465..892580Pylaiella littoralis U1_48CDSP-littoralis_Contig20 892466..892580 +
1680789980.1356204-CDS-P-littoralis_Contig20:893258..8935661680789980.1356204-CDS-P-littoralis_Contig20:893258..893566Pylaiella littoralis U1_48CDSP-littoralis_Contig20 893259..893566 +
1680789980.1502433-CDS-P-littoralis_Contig20:894154..8942351680789980.1502433-CDS-P-littoralis_Contig20:894154..894235Pylaiella littoralis U1_48CDSP-littoralis_Contig20 894155..894235 +
1680789980.1616154-CDS-P-littoralis_Contig20:895958..8962391680789980.1616154-CDS-P-littoralis_Contig20:895958..896239Pylaiella littoralis U1_48CDSP-littoralis_Contig20 895959..896239 +
1680789980.172142-CDS-P-littoralis_Contig20:897090..8973521680789980.172142-CDS-P-littoralis_Contig20:897090..897352Pylaiella littoralis U1_48CDSP-littoralis_Contig20 897091..897352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.207.1prot_P-littoralis_Contig20.207.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 892466..897352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.207.1

>prot_P-littoralis_Contig20.207.1 ID=prot_P-littoralis_Contig20.207.1|Name=mRNA_P-littoralis_Contig20.207.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
IYSCSRDTTIRQWNRCDIPALRVFEGHDLACTDLALSADEKTLCSGSRDT
SVRAWDVETGRCTASGKVPRNLVTCLRFLAPSPSLSSESRLESESSSASS
SSASSSSVVVQGGEDLRLRVWDLREGGLRPAVTVEGYTFFPICLDISADC
HEVLTGCKGFNGEGCETKLWDLRHTASPLREYTGHTQDTTACVFLDSKDK
EGVTGGARGGGGGGSRDEKGTENVGDVCHGSSSSFSCASHTRRIATVSKD
GSIKIYDRDSGGLIVDHAEPECGGYTGLAYQYDSSTGCPLLLASTITGGL
YVFRLEEEKQEGKESGVGGGVDDGWRNMRAGCGGRLRCLGFVQGCQIL*
back to top

mRNA from alignment at P-littoralis_Contig20:892466..897352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.207.1 ID=mRNA_P-littoralis_Contig20.207.1|Name=mRNA_P-littoralis_Contig20.207.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4887bp|location=Sequence derived from alignment at P-littoralis_Contig20:892466..897352+ (Pylaiella littoralis U1_48)
ATCTACAGCTGCTCTCGAGATACCACCATTAGACAGTGGAATCGATGTGA CATCCCAGCGCTTCGAGTGTTTGAGGGCCATGATCTTGCCTGTACAGACT TGGCGCTCAGCGCAGGTATGTAAGTTTGGCACTTCGCCAACCACAGGAAA TAAAGAACGGAATTGATTGGTTTGATCGTTGCATTTCATTCTGGGATGAC GCGGTTACTCCTTCGTTGGTGTAACTTAATACATTCGTTTGGGCTCCATG CGACTGCAAATTCGGTTAACATAATATTTCCCCCCTCGACTTTTCACGCG TCGCTAAGTTAGACACCCCGCTCGCTAAATAACACAAGAGGATTCTTCTG CAGAAAGCTAGACGTGGTTAAAACTCCAAGCAGACGTACATCATTTACGC CCTCCCCATTGCAATGAATGATCTAGCCGGTTTGGATTTGTTGAAGTTTT CTTCGTGGTTTCTATCCTCCGCGCGGTTTACATACACGCTGCGAGCCTCA TGGGAAACCGCCGCGCCGACACAGTTAACTAACCTTGACCCACCTCGTTG ACCAGATAAACTTGGCGCCCGCAAATGAGGATCGCCAAAATATGGTTAAG ACTCAATTTTCCGTTTAGTTTTGCCACTGTTTGAGCGAACCATTGTGTAG GATTCACATTGGTTAGAGCCCGTACTGTAGAGGGTTGTGTCCGCCAACTC AGACTTTCTCATTGTTCGTGATACCTCTGTGAGCTTCACTCTCTGTGTGT TGTACCTGCGAGCGCCAACTGTTGTATGTATGTACCGTATCAGACGAGAA AACGCTCTGCTCCGGATCTCGAGATACCAGCGTCCGAGCGTGGGACGTTG AGACGGGCCGGTGCACAGCCTCGGGGAAAGTGCCGCGCAACCTGGTAACT TGCCTAAGGTTCTTAGCGCCGTCGCCGTCGTTGTCGTCGGAATCGAGATT GGAGTCGGAATCGTCGTCTGCTTCCTCTTCTTCCGCCTCCTCCTCCTCCG TAGTGGTGCAGGGAGGGGAGGACTTAAGGCTACGAGTGTGGGATCTGCGA GAGGGCGGGCTGAGACCGGCCGTGACTGTCGAGGGCTACACGTTCTTCCC GGTGGGAACAATACTTCTGTATGCAGTAGATCCTTCTTCTTCCCCATTCG TTTGATTTATCTTCTGAAGGCGATAATGAGAAGGACAATAATAGAAAAAC GGAGTGTCCCCCGTCGCATTTTTGTGGGGAGAGCAACAATGAATGAAAAA CACTCACAATTTAAACATGCCACCCTTGAGTAACTTTTTGAGATAGAAAA TATCAGAGGGGGGAGAGGGGGGGTGGGGGTATCTCAGAGATGATCCTGCC GAGGAGGGGAAGTTTCCCTTTATGCTGTTGTCGTTACTGCTGCTGCTGCT GCTGCTGCTGCTGTCCTCCACCGCTCTCAAACTACTGCCCATATTTTAAC GCAGACCAGTGTCTTTCGGAAAACTACTGCTGCTGTGTATCCTACAGCAG CCGCAGCATCCATTCCTGGAAAACATCGATTCTCTAAATTGCAGACATCG ATTTGCTTTCCGAAATTCTGTGTGTTCATAATGAAATCAGCTCTCAGTTC ATTCAATTGACTACGTTACGCGGTGCCTACATTTATCTGCATCTCCCACT GCCTTTACCATACATGCGTCGCTCGTTCGTCGCGCACAGATTTGTCTCGA CATTTCAGCGGACTGCCACGAGGTCCTGACGGGCTGTAAGGGTTTTAACG GCGAGGGGTGTGAGACGAAGGTAGGTTATATGGGGTTCAGAATAATACAA ATGTAGCTTATAAGGTGAGACATTCGTTGCGGCGCCATAAAACATGAGTG AGAATGTATGTACTTGAAGATACATATATGAGGAGAATGACCGAAACACA TTCCTTCTGTCGTCAATCAGAATAAGTTGTTGTTGTTGTTGTTGATTCTC ACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCAC ATATCGTGCTAGGAGGAAAAAAAGAAAAAGAAAAGAAACGGACCATGATC ACCCACAGTCAAATCAGATCAGAATAAGTATTGGCAGGTAAATGTGTCGA AACTTTGTGAGGAATGCCACAAACGTAGACTTCCTCTTTCTTTTCAGATT TGTTGGACATATATACATATATATCCATATACGTATGAATATACTTCCTC TGTGTCATAAGTCTGTGCCGTTATGTTTTTACGCCCCCTCAACGGTGTCC GATGTCTTCGGCGATAACTTTTTCGAAATCTTCGGAGTTTTTTGGGTTGA AACACATATATATTTTTTTCTTGCGCACTACCCTGCGCATGGGCTAGCGG CTAACAAAAAAGTAGTATTTGACCCTTTCCAGAGGTGGAGTGGGGGGCGG GGGCAAAAAAAAAACCAATGCAATCCCCTCCAAAATTATCCCGAACCCTG AACCTAGCCCCCCTACCTCAAAGATTCATGTCGAGTCCCTCCTTACTAAA ATCAGTATAATAGTGACGCAACGCTAAAACCAAGATACTTGGGTTTGCCA CACTAAAACGAAGATACGTGGGACTCATGCTCTAAAACCAAGACATCTGG CGGAATCAAAATTCTTTAAATGGGCCAAAATGGGCATATTTTGACTTCAT TTTAGTATAAACAACTGGCATTTTTTTTTCTTTTTTTTTTGCATCAGCTT CTTTGAGACTTCATCTTCCGAACGAACCTAACTATAGGATGATCGAAACA GTATGGATGCGCAAACAATTACACGCACCTAACAGCCCAGACTTATGATA CAGGATAAGTATACTTCGAAGTACTTATTTACTGTGTGGAAACGGTGTAA CGCTTGCCTAAATAAAAAGACCCACCATCATGTTGCTACACAGGATATAG TCGCAGCTAATAAGGTGAAGCTTTTGTGACGCAGGCAAAAACAAACGTTC TTCCATGTTGCACGCGTGCGAAAGATACGCGAGCTTCCATCTGTGACAGT GCATAGAGTTTCGCATGCATATCCCGCCAACGAACATCTACATTTTAACT CAAAACTTGCCGACAACACGAACGAACGAGCGTTTTTCTCGCGAGGAGTC GTCGTTTTGGCACGAGGGTGGCGTAATGGTTGCTTGTACATGAACGAAGC GCTTCACTTTGTCCCCAAAGGCCAGACATCGAGCGCAACGGCACGATGTC ACCGAAACATTTGGGTGTTGCTACAAAAAATATGTGATATACCATCGGGT GATAAAAAACAATTGTCTTCGGCTGGAGCGGGTGCTGATGCACCCAGCGA AAGTTACCATACACTAGAATACCAGACAAACGGCCCCGTGCTAACGTCAG CGTCCGTTGATAAAAATGAGGGACGTTGAGAAGTGTACACAGATGCGCTG CTAGCAAGCAACATCCAGTCACATCAAACGTTGGTTCTTGCTCGGGCGGT CGGTCACGCTCCTTTGTTCTGTGTCCCTCACCCTCGCTGCTAGCTGTGGG ACCTCCGCCACACGGCATCACCCCTGCGGGAGTACACCGGGCACACTCAG GACACAACAGCTTGCGTCTTTTTGGACTCGAAAGACAAAGAAGGCGTCAC AGGGGGAGCAAGAGGAGGAGGAGGAGGAGGATCGAGGGATGAAAAGGGGA CAGAGAATGTCGGCGACGTCTGCCATGGCTCCTCCTCGTCGTTCTCCTGT GCTTCCCACACAAGAAGGATAGCTACAGTGTCCAAGGACGGGAGTATTAA GATCTACGACCGTGACAGTGGTGGGTGTGGTTGGTTTCCCCCGACGGTTT ACACGTCCTTTTATGTGGATGGCGTTGTTTGCGTTAGATGGCGGTATCTA TCCGGTAGAAAGAACGGTAGCTGGAGATAAATTATTTTTTGTTTCTGTTT TGTTACCACGCTACCCGTTTCGTGTACCATTTTTACATCCATGAGCGCGA GGCGCGGGTGCGTAAGGTGGTGATCTTCTTGTACAGAGTACTGCATGCGG TGCTGTTTCGTTCCTCGGCCTTGCTTGCTACCCCCCCGTTACCTCGAAAA ATATTTATGACACTCTTCCGCCTTCAAGCCTTGGTGGTCCACAAAAAACA GTCAGGCCACCTTGACCACATAGCTGTCACGTACCATACAAAGCACCCCG GAATAGCCCCTAGAGCGCAATCACCCTGACCCTGATTCTTGCCAGCCGTG CGAAGCTACACGCCGAAGCAGCCTTGTTCACGCCATGTTTTCATGATATG ATATGTGCGATGTTTTTAGATTATACTTCGCCACAATTGTGCCATTTTTT TGTACTTCGTACTTCTCTACCGGTGGAGTGAAATGTTTGGGGGGGATCCG CAAGGCTCTTACCAAGGTTATTATCAATCAAACCGAAGGAGGAGTAATAT TCGCTTTGCCTGTAACGACGGCAAAAATCCTTCCCCTTAAACCCTACTCT ATTGGAGTAGAGGAACGGCGCTCCGTCTCGAAAGGGATGCGCGTGGTCGG CCAAAATCCAGATGACAAAGACAAGCAACAGATAAGTATCCCCCCCCCTG TCCTTGTTTGCCGTCCTCGCGGCTGGGTACTCCCCGGCGGTCGAAACGAA ACCGTACCACCCCCGCCTTAGGAAGCCTCATCGTTGACCACGCCGAGCCC GAGTGCGGCGGGTACACGGGCCTCGCCTATCAATACGATTCGAGCACGGG ATGTCCCCTTCTCTTGGCGTCGACCATAACGGGAGGACTGTACGTTTTTC GGCTGGAAGAAGAAAAGCAAGAAGGAAAAGAATCAGGGGTAGGGGGGGGC GTGGACGATGGATGGAGAAATATGCGGGCGGGGTGCGGAGGGCGGCTGCG TTGCCTTGGATTTGTGCAAGGCTGCCAAATTTTATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig20:892466..897352+

>mRNA_P-littoralis_Contig20.207.1 ID=mRNA_P-littoralis_Contig20.207.1|Name=mRNA_P-littoralis_Contig20.207.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig20:892466..897352+ (Pylaiella littoralis U1_48)
ATCTACAGCTGCTCTCGAGATACCACCATTAGACAGTGGAATCGATGTGA
CATCCCAGCGCTTCGAGTGTTTGAGGGCCATGATCTTGCCTGTACAGACT
TGGCGCTCAGCGCAGACGAGAAAACGCTCTGCTCCGGATCTCGAGATACC
AGCGTCCGAGCGTGGGACGTTGAGACGGGCCGGTGCACAGCCTCGGGGAA
AGTGCCGCGCAACCTGGTAACTTGCCTAAGGTTCTTAGCGCCGTCGCCGT
CGTTGTCGTCGGAATCGAGATTGGAGTCGGAATCGTCGTCTGCTTCCTCT
TCTTCCGCCTCCTCCTCCTCCGTAGTGGTGCAGGGAGGGGAGGACTTAAG
GCTACGAGTGTGGGATCTGCGAGAGGGCGGGCTGAGACCGGCCGTGACTG
TCGAGGGCTACACGTTCTTCCCGATTTGTCTCGACATTTCAGCGGACTGC
CACGAGGTCCTGACGGGCTGTAAGGGTTTTAACGGCGAGGGGTGTGAGAC
GAAGCTGTGGGACCTCCGCCACACGGCATCACCCCTGCGGGAGTACACCG
GGCACACTCAGGACACAACAGCTTGCGTCTTTTTGGACTCGAAAGACAAA
GAAGGCGTCACAGGGGGAGCAAGAGGAGGAGGAGGAGGAGGATCGAGGGA
TGAAAAGGGGACAGAGAATGTCGGCGACGTCTGCCATGGCTCCTCCTCGT
CGTTCTCCTGTGCTTCCCACACAAGAAGGATAGCTACAGTGTCCAAGGAC
GGGAGTATTAAGATCTACGACCGTGACAGTGGTGGCCTCATCGTTGACCA
CGCCGAGCCCGAGTGCGGCGGGTACACGGGCCTCGCCTATCAATACGATT
CGAGCACGGGATGTCCCCTTCTCTTGGCGTCGACCATAACGGGAGGACTG
TACGTTTTTCGGCTGGAAGAAGAAAAGCAAGAAGGAAAAGAATCAGGGGT
AGGGGGGGGCGTGGACGATGGATGGAGAAATATGCGGGCGGGGTGCGGAG
GGCGGCTGCGTTGCCTTGGATTTGTGCAAGGCTGCCAAATTTTATGA
back to top