mRNA_P-littoralis_Contig20.203.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.203.1
Unique NamemRNA_P-littoralis_Contig20.203.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: D8LJL1_ECTSI (6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL1_ECTSI)

HSP 1 Score: 546 bits (1406), Expect = 2.210e-191
Identity = 282/330 (85.45%), Postives = 305/330 (92.42%), Query Frame = 2
Query:  530 LRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWGHRRETKHAGRALLEDLIKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASASLLESARSQIDETIRSGYSDCSFASVATVIEEEFCKPKDKDG 1519
            LRVGVVGLGRMGSGMALN+AKAGFPL+++DAEEGRTQELRE WVKDKHLPTGPGGLSTPHLHL+ESPADVMLASDVCLVCVHTEQQS+EALAGEDGLLAVG++ MADKIIVDHGTVSP FA+ MS+ VIKGGGAFLDAPISGGPQGALEGTLSIMVGGK EHL TCLPV+EAMGSR+EHMGG+GAGAAAKLVNQHLVI NTVAACEAYVLARRLGLSD  KLK LLG SWGH +        +L DL+KVEEAGDDVE+LRRSLAPIRTLGKDAAILARAAAESGAS+SLLESA++QIDET+RSGYSDCSFASVAT IEEEFC+  DK+G
Sbjct:    2 LRVGVVGLGRMGSGMALNVAKAGFPLAIYDAEEGRTQELREGWVKDKHLPTGPGGLSTPHLHLLESPADVMLASDVCLVCVHTEQQSVEALAGEDGLLAVGSKVMADKIIVDHGTVSPSFARSMSKAVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKGEHLKTCLPVLEAMGSRIEHMGGYGAGAAAKLVNQHLVIINTVAACEAYVLARRLGLSDMGKLKALLGASWGHSQMLDQ----VLGDLLKVEEAGDDVEVLRRSLAPIRTLGKDAAILARAAAESGASSSLLESAQAQIDETVRSGYSDCSFASVATTIEEEFCEAVDKEG 327          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A6H5JLP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP7_9PHAE)

HSP 1 Score: 419 bits (1076), Expect = 8.890e-143
Identity = 208/234 (88.89%), Postives = 222/234 (94.87%), Query Frame = 2
Query:  530 LRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWGHRR 1231
            LRVGVVGLGRMGSGMALN+AKAGFPL+++D EEGRTQELRE WVKDKHLPTGPGGLSTPHLHL+ESPADVMLASDVCLVCVHTEQQS+EALAGEDGLLAVG++ MADKIIVDHGTVSP FAK MS+ VIKGGGAFLDAPISGGPQGALEGTLSIMVGGK+EHL TCLPV+EAMGSR+EHMGG+GAGAAAKLVNQHLVI+NTVAACEAYVLARRLGL DT KLK LL  SWGHRR
Sbjct:    2 LRVGVVGLGRMGSGMALNVAKAGFPLAIYDTEEGRTQELREGWVKDKHLPTGPGGLSTPHLHLLESPADVMLASDVCLVCVHTEQQSVEALAGEDGLLAVGSKVMADKIIVDHGTVSPSFAKSMSKAVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKEEHLKTCLPVLEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLGDTAKLKALLEASWGHRR 235          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A2D8MY99_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MY99_9BACT)

HSP 1 Score: 167 bits (423), Expect = 2.480e-44
Identity = 113/302 (37.42%), Postives = 166/302 (54.97%), Query Frame = 2
Query:  530 LRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWGHRRETKHAGRALLEDLIKVEEAGDDVEILRRSLAPIRTLGKDAAILARAA-AESGASASLLESARSQIDET 1432
            ++VG  GLG MG GMA N+ +AGF L V++    + + L  + V                   ME+P ++  A+D+ L C+     + E    E+G+LA     +A KI VDHGTV    ++ +    ++ G AFLDAPISGGP+GA  GTL+IM GG +E  +   PV EAMGS+V HMG  GAG A KL NQ LV  N++A CEA  +AR +G+ D  +L+ +L  +WG  R  +  G  +  +    +E G  +  + + L+ I  LGKD+ +  +AA A  G    L+++  S+ D T
Sbjct:    1 MKVGFAGLGNMGGGMARNVLQAGFELLVYNRTRSKAEALAGAEV-------------------METPRELARAADIILTCLADIAVTRELFLEEEGILA---EAVAGKIFVDHGTVDLDTSRALHAACLERGAAFLDAPISGGPEGASAGTLAIMAGGDREVFERARPVFEAMGSKVVHMGPAGAGTATKLANQLLVGVNSLACCEALTMARGVGV-DLEQLQDVLASAWGQSRMLERCGPIIARE--GYDEPGAPLRNILKDLSIITRLGKDSGLSVKAADAALGVYQGLVDAGMSESDMT 277          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A356FFG8_9BACT (2-hydroxy-3-oxopropionate reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FFG8_9BACT)

HSP 1 Score: 167 bits (423), Expect = 2.480e-44
Identity = 112/322 (34.78%), Postives = 167/322 (51.86%), Query Frame = 2
Query:  530 LRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWGHRRETKHAGRALLEDLIKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASASLLESARSQIDETIRSGYSDCSFASVATVIEEEF 1495
            ++VG  GLG MG GMA N+ +AGF L V++    + + L  + +                   M++P D++  +D+ LVC+       E   GE+G++      +  KI VDHGTV    ++D+       G  FLDAPISGGP+GA  GTL+IM GG+ +  +   PV +AMGS+V HMG  GAG AAKL NQ +V  N++A CEA  +AR++G +D  KL+ LL  +WG  R  +  G  +  +    +E G          AP+R + KD +I+ R   ESG S    E+A     + + +G S+    +    +  E 
Sbjct:    1 MKVGFAGLGNMGGGMARNVLQAGFELFVYNRTRVKAEALEGAVI-------------------MDAPRDLVREADLVLVCLADIASGREFFLGEEGVV---DDSVEGKIFVDHGTVDLATSRDLHAACGAQGAGFLDAPISGGPEGASAGTLAIMAGGEPDIFERARPVFDAMGSKVVHMGPAGAGTAAKLANQLMVGVNSLACCEALTMARQVG-ADLEKLQDLLANAWGQSRMLERCGPIIARE--GYDEPG----------APLRNILKDLSIITRQGKESGLSVRAAEAAFGVYQQLVDAGLSESDMTAACRCVSGEL 287          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A7C7KWK6_9BACT (2-hydroxy-3-oxopropionate reductase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C7KWK6_9BACT)

HSP 1 Score: 149 bits (377), Expect = 1.270e-37
Identity = 85/220 (38.64%), Postives = 127/220 (57.73%), Query Frame = 2
Query:  518 MSPTLRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGL 1177
            M+   R+G +GLG MG  MA N+  AG+PL+V++    +  EL E+  +                   E P DV  +SDV +  V       + + G+DG++  G RE    ++VD  T+SPR A++++Q +++ G AFLDAP+SGG +GA+EGTLSIMVGG +   + CLP+ + +G  + HMGG G G   KL NQ + + N +A CE  V A ++GL
Sbjct:    1 MATAERIGFIGLGIMGKPMARNLLNAGYPLTVWNRTRCKMDELVEAGAQPA-----------------ECPRDVARSSDVVITMVADSPDVQQVILGDDGVIE-GVRE--GMVVVDMSTISPRVARELAQALLRKGVAFLDAPVSGGQRGAIEGTLSIMVGGDERAFERCLPIFQVLGKTIVHMGGSGMGQTTKLANQIICVLNILAMCEGLVFAAKMGL 200          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A7C5A1E3_9CHLR (NAD(P)-dependent oxidoreductase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5A1E3_9CHLR)

HSP 1 Score: 147 bits (372), Expect = 7.200e-37
Identity = 88/220 (40.00%), Postives = 129/220 (58.64%), Query Frame = 2
Query:  533 RVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVK 1192
            +VG +GLG MG GMA NI KAGFPL+V++    + + L  +  K                   ++PAD+   SD+ L+CV         + GE+G+LA G +  A  +++D  T+SP   + +++ +   G A LDAP+SGG +GA  GTLSIMVGG+ + ++  +PV EAMG ++ H+G  GAG   KLVNQ LV+ N +A CEA + A+  G+ DT K
Sbjct:    4 QVGFIGLGIMGQGMAHNILKAGFPLTVWNRTASKAEPLLAAGAKAG-----------------QNPADIAAHSDIVLICVSDTPDVENVILGENGVLA-GVK--AGSLVIDCSTISPIATRKLAEKLAAAGAAMLDAPVSGGSEGAARGTLSIMVGGETKDVERAMPVFEAMGKKITHVGPVGAGQTVKLVNQILVVGNCLAMCEALLFAQAGGV-DTAK 202          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: I0I3Y9_CALAS (Putative 2-hydroxy-3-oxopropionate reductase n=2 Tax=Caldilinea aerophila TaxID=133453 RepID=I0I3Y9_CALAS)

HSP 1 Score: 146 bits (368), Expect = 2.420e-36
Identity = 87/215 (40.47%), Postives = 123/215 (57.21%), Query Frame = 2
Query:  533 RVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGL 1177
            R+G +GLG MG GMA N+ +AGFPL+V++    R QEL                      H    PADV   SD+ ++CV       E + GE G++  G R     +++D  T+SP+  + ++  + + G   LDAP+SGG +GA +GTLSIMVGG+ E  +  LPV +AMG  + H+GG GAG   KLVNQ LV+ N +A CEA +LA+  G+
Sbjct:    4 RIGFIGLGIMGRGMAANLLRAGFPLTVWNRTTTRMQELVAQGA-----------------HAGAGPADVAERSDIVVICVSDTPDVEEVILGERGVIH-GARP--GSLVIDCSTISPKATRRIAGRLAEQGIFMLDAPVSGGSEGAAKGTLSIMVGGESEQFERALPVFQAMGKTITHVGGHGAGQTVKLVNQALVVGNCIAMCEALMLAQAGGV 198          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A7S2FHY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHY7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 5.940e-36
Identity = 113/291 (38.83%), Postives = 156/291 (53.61%), Query Frame = 2
Query:  536 VGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALA--GEDGLLAVGTREMADK--IIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGV---SWGHRRETKHAGRALLEDLIKVEEAGDDVEILRR-SLAPIRTLGKDAAILARAAAESG 1384
            VG++G G MG GMA ++A+A   +  +D++    Q         K +   PG      ++   S ADV    D   V V    ++ E       DG+L     E A K  +I+  GT++P FAK++   + + G  FLDAP+SGGP+GA  GTL+IMVGG KE  +    VM+ +GSR  H+GG GAGAAAKLVNQ L  SN +AA EA  LAR +G+     L+TLL     SWG+    + +G  + E L   + + D VE L   S AP+R   KD   +  AA E+G
Sbjct:   13 VGLIGAGNMGRGMAASLARANTRVIQYDSDAFSLQ---------KSVEQAPG-----LIYSATSVADVCERIDGGTVVVSVSGEAAERAVFFAADGIL-----EQARKGSVILGCGTMTPSFAKEIHAALAEQGLRFLDAPVSGGPEGAANGTLTIMVGGGKETFEASCEVMDTLGSRSVHLGGPGAGAAAKLVNQLLTASNALAASEALALARAMGIDSQDSLRTLLSTLETSWGNSTMLQRSGGIVAEAL---DGSKDPVEALAVISKAPLRNFAKDLDFVLAAADEAG 281          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A7C3N901_9CHLR (NAD(P)-dependent oxidoreductase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3N901_9CHLR)

HSP 1 Score: 145 bits (365), Expect = 6.290e-36
Identity = 92/230 (40.00%), Postives = 132/230 (57.39%), Query Frame = 2
Query:  533 RVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWG 1222
            RVG VGLG MG GMA N+ KAGF L+V++    +   L E+  K                   ++PADV   SD+ ++CV         + G DGLLA G R  A  +++D  T+SP+    +++ + + G A LDAP+SGG +GA +GTLSIM+GG+ + ++  +PV EAMG ++ H+GG GAG   KLVNQ LV+ + +A  EA + A+  G+      KTL  VS G
Sbjct:    4 RVGFVGLGIMGQGMAHNLLKAGFALTVWNRTASKMDPLVEAGAKAG-----------------KNPADVAAQSDIVVICVSDTPDVEAVILGSDGLLA-GAR--AGSLVIDCSTISPQTTVSLAEKLAEKGVAMLDAPVSGGSEGAAKGTLSIMIGGEAKDVERAMPVFEAMGKKITHVGGHGAGQTVKLVNQILVVGHALAMSEALLFAQAGGVDLN---KTLEAVSAG 210          
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Match: A0A7C6PTK3_9FIRM (2-hydroxy-3-oxopropionate reductase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6PTK3_9FIRM)

HSP 1 Score: 144 bits (364), Expect = 9.620e-36
Identity = 87/226 (38.50%), Postives = 130/226 (57.52%), Query Frame = 2
Query:  533 RVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKDKHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDGLLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQGALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHLVISNTVAACEAYVLARRLGLSDTVKLKTLLG 1210
            +VG +GLG MG  MA N+ KAG+ L+VF+    +T+EL+ +  K                 +  SPA V   SD+ +  V       E + G++G++  G+R     I++D  T+SP+   +++  + + G   LDAP+SGG +GA+EGTLSIMVGGKKE  + CLP++++MG ++ H+G  GAG  AKL NQ L   N +A CE  VLA + GL     ++ L G
Sbjct:    4 KVGFIGLGIMGKPMAKNVLKAGYELTVFNRTSSKTEELKRTGAK-----------------VASSPAQVARESDIVITMVSDSPDVREVVLGKNGIIE-GSRP--GLILIDMSTISPQVTVEINHELGRRGVEMLDAPVSGGEKGAIEGTLSIMVGGKKEVFERCLPILKSMGRKITHIGPSGAGQWAKLCNQVLASLNLLAVCEGLVLAAKAGLDINKVIEALSG 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJL1_ECTSI2.210e-19185.456-phosphogluconate dehydrogenase NAD-binding n=1 T... [more]
A0A6H5JLP7_9PHAE8.890e-14388.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2D8MY99_9BACT2.480e-4437.42Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A356FFG8_9BACT2.480e-4434.782-hydroxy-3-oxopropionate reductase n=1 Tax=Planct... [more]
A0A7C7KWK6_9BACT1.270e-3738.642-hydroxy-3-oxopropionate reductase n=1 Tax=Armati... [more]
A0A7C5A1E3_9CHLR7.200e-3740.00NAD(P)-dependent oxidoreductase n=1 Tax=Anaeroline... [more]
I0I3Y9_CALAS2.420e-3640.47Putative 2-hydroxy-3-oxopropionate reductase n=2 T... [more]
A0A7S2FHY7_9STRA5.940e-3638.83Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7C3N901_9CHLR6.290e-3640.00NAD(P)-dependent oxidoreductase n=1 Tax=Anaeroline... [more]
A0A7C6PTK3_9FIRM9.620e-3638.502-hydroxy-3-oxopropionate reductase n=1 Tax=Firmic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:878534..887023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJL1
PFAMsNAD_binding_11,NAD_binding_2
Model size1534
Max annot lvl2759|Eukaryota
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Hectar predicted targeting categoryother localisation
Exons8
Evalue5.18e-195
EggNOG OGsCOG2084@1|root,KOG0409@2759|Eukaryota
Ec32 ortholog descriptionNADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain
Ec32 orthologEc-17_002410.1
EC1.1.1.31
Description3hydroxyisobutyrate dehydrogenase
Cds size1017
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.203.1prot_P-littoralis_Contig20.203.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 878534..885153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789979.973152-CDS-P-littoralis_Contig20:878533..8786471680789979.973152-CDS-P-littoralis_Contig20:878533..878647Pylaiella littoralis U1_48CDSP-littoralis_Contig20 878534..878647 -
1680789979.9848843-CDS-P-littoralis_Contig20:880169..8803331680789979.9848843-CDS-P-littoralis_Contig20:880169..880333Pylaiella littoralis U1_48CDSP-littoralis_Contig20 880170..880333 -
1680789979.9962556-CDS-P-littoralis_Contig20:880674..8808191680789979.9962556-CDS-P-littoralis_Contig20:880674..880819Pylaiella littoralis U1_48CDSP-littoralis_Contig20 880675..880819 -
1680789980.0062907-CDS-P-littoralis_Contig20:882063..8821971680789980.0062907-CDS-P-littoralis_Contig20:882063..882197Pylaiella littoralis U1_48CDSP-littoralis_Contig20 882064..882197 -
1680789980.0199406-CDS-P-littoralis_Contig20:883222..8833461680789980.0199406-CDS-P-littoralis_Contig20:883222..883346Pylaiella littoralis U1_48CDSP-littoralis_Contig20 883223..883346 -
1680789980.0320606-CDS-P-littoralis_Contig20:883822..8839921680789980.0320606-CDS-P-littoralis_Contig20:883822..883992Pylaiella littoralis U1_48CDSP-littoralis_Contig20 883823..883992 -
1680789980.042518-CDS-P-littoralis_Contig20:884987..8851531680789980.042518-CDS-P-littoralis_Contig20:884987..885153Pylaiella littoralis U1_48CDSP-littoralis_Contig20 884988..885153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789980.058743-UTR-P-littoralis_Contig20:885153..8853971680789980.058743-UTR-P-littoralis_Contig20:885153..885397Pylaiella littoralis U1_48UTRP-littoralis_Contig20 885154..885397 -
1680789980.0782726-UTR-P-littoralis_Contig20:886750..8870231680789980.0782726-UTR-P-littoralis_Contig20:886750..887023Pylaiella littoralis U1_48UTRP-littoralis_Contig20 886751..887023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.203.1

>prot_P-littoralis_Contig20.203.1 ID=prot_P-littoralis_Contig20.203.1|Name=mRNA_P-littoralis_Contig20.203.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=339bp
MSPTLRVGVVGLGRMGSGMALNIAKAGFPLSVFDAEEGRTQELRESWVKD
KHLPTGPGGLSTPHLHLMESPADVMLASDVCLVCVHTEQQSIEALAGEDG
LLAVGTREMADKIIVDHGTVSPRFAKDMSQTVIKGGGAFLDAPISGGPQG
ALEGTLSIMVGGKKEHLDTCLPVMEAMGSRVEHMGGWGAGAAAKLVNQHL
VISNTVAACEAYVLARRLGLSDTVKLKTLLGVSWGHRRETKHAGRALLED
LIKVEEAGDDVEILRRSLAPIRTLGKDAAILARAAAESGASASLLESARS
QIDETIRSGYSDCSFASVATVIEEEFCKPKDKDGGSSG*
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mRNA from alignment at P-littoralis_Contig20:878534..887023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.203.1 ID=mRNA_P-littoralis_Contig20.203.1|Name=mRNA_P-littoralis_Contig20.203.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8490bp|location=Sequence derived from alignment at P-littoralis_Contig20:878534..887023- (Pylaiella littoralis U1_48)
GACAGCACAGACCACCGCGCCGTGATTTCTAAAGGTAGCAAGCTCAAAGA GGGTTCCGTGCAACCCTGTAGTCACTGTGCCAACACCTTAGCCGCTGGTT TATGTGGTGGAAGTGTGCCAGCCATGCAAAACACATCGTCTGAGCAGCGA CTCTTTGAAAGTATTTTTTTAGTTTGGGCTGGCGTGCGTCCCCAGAGGCA CACAGCAGTTGAACGCGACAGACATCAGAACATCACAGCAGTCACGCCCT CGCTCTCTACACCACGTATCAAGGTGAATACTTCTTGGCTGTCTCATTTA TGTAGTGCTCTCCACCTGCAGGAGATTGGGCTGGAGGTGGGCTCATTCAA TCGGTGGAGAGAAGCAGAAGCATCGCTCGAGGTCTGGCCGGCCACGCTGG AAATGCAAGCGACCTTTATTTGCACATGAAAATAGACGGGCCAAAATAGA ACAGCAGTTCCCTGCTGCCCATGACCCCTGACTTTGCATTTACTTCGCTT GACCCGGCACCCTTCACCACCACTTGAACGAAAGACTCATTGTGTTGTCT CTACAGCAGCACATCATCAGCCGTGTGTGTGTATTTATTTGTGTTGCTAT GCTTTACAGCAAAGTGTAGACTAGGTGTTTCTTCCAGAAAGGATATTCGA TTTCGCAAACTCATTTTCAAATTTTATTTATTTTAAAAGGAATTCCTATT CACCGCGCTTATTATTATTTTTTTCCAAGAAAGGACATTCGAGATAAGAT ATTCTATTTCGCAACACTCTAAAGTGTAGACTAGGTGTTTCTTCCAGAAA GGATATTCTATTTCGCAAACTCATTTTCAAATTTTCGTTAAAAGGAATTC TTATTCACCGCGCTTTTTATTTATTTTTTCCAAGAAAGCATATTTGAGAT AAGATATTCTATTTCGCAAACACTCTATTGATTCATTTGAATATGAGAAA AATGAAAAACGGGAAACGGTACTGAAATGTTGTTTAGGGTCCGGGGGGGT GGAAACCTTGATCGCATGAACCAACGTGGTGCGTGTGTTCCCAAGAGATT TTAACTACGTCACGTTCTGTCTCTACCTGGAGTGCACGGGTACCCCCCTT CTCAGCAAACCTGCTTTCAGTACCCTTTACCCACAGCACATCTCGTCTGT AGCAGAGAGTTGTTCTTTGGTTTCTTGACAGCGTGGCAAAGAGTCATAAA GATCAATGTACAGAAGTGCGTATCCATACCGTGGGGTGTGCACTGTATCT CCAACTTTTCATTTCCTTCGACTGGCGAGAACCTCTCTGCTGCACTACGC TACTGCTGCATTTGCGGCACTCCTGGGCTGAAACAAGAGCAAAGCTTGCA CACATAGACGGAGACATGAGAGATCTATCATGCCATTTGCGTTCCAGGAA AATACCTGCTGTTACAAGTATGCGTGCGACAGAATATGGAATAGACTAGC AGACAAGGATGGCAGGTGCCACGGCACCACCACCACTGCTGCTGCCGCTG CCGTTGCTGCACTTTGCTCGCTCGCCAACCAAAACTGGCCGTGATGCGCA GAAAATTTCAGGCCCTTTCGAACAGTCTCCCGTCCTGCTGTCTTCCGTAT ACGTGTATATTTTGTGGTCCTTTCAGCTGCGGAAGACCAACAAAACCAAG GTGTTCGAGCTTTGGTTTGGTGGAGGCTGCAGCTATATAGCCACTCGCTG CGACTGTCTGGAGGAAAGTTTTCCGAGGCAGGACTCACTCCCTAAAGAGA ACAGGTGTCTGGAAACTTTTCCCACAAGTTTTGGCTCTGCGGCTCAAACA ACAGCAGTCCACAGCACTAGTAAAACCACCCTTGAGCAAACGACCAAAAT CTATCGCATCGTCACGCGTCATGAGCCCCACGCTTCGAGTGGGCGTTGTG GGGCTGGGGAGGATGGGGTCAGGGATGGCCCTCAACATCGCCAAGGCGGG TTTCCCTCTGTCCGTGTTCGACGCCGAGGAAGGGCGCACGCAGGAGCTGA GGGAGAGCTGGGTGAAGGACAAGCACCTGCCGACAGGTGTGACACGATGT ATCGTATCATATGACGCGACCGGAAGGTTTCCATGTTTTTCCATGGCGTT TCTGTGCACAAGTACCGACGAAAAGAAAAAAAGCCAAGAACACGCGTCCA ATAAGAAGTGACTGCGTGAAAGGACAGGAACCTGCCGACAGGTATGGTTC TGCTGTATCTACTGCTGCCTGTGGAAGTATCGGCTTTTTAACATACCGGT ACGGATATACTTCGACGTTTATATGAACCTGGGCGGGTGAAAGACAGACG ACTGCCAGTAGGCTGATTGGCAGATGCCTTTCTTGGCCCAGATGTTGTCG CGTGTTTTTAAAGTCGGTGATCCTGCCTGTAGAAGCACCGATTACTGAAA CACTATATACGGGTATCGCTGGGTGAAAGGCAGGCACCTGCTCACATATG GCATGTCAGATACGGAGTATGTTTTAAGTTTTCTGTATGACCAAGGTGCT GCTAACCACATGCGGAAATGCATGGGGGTCAAACACTAGCGCACGATGTC ACGTACGTGGTGATTTCAGTTCTGTGTAGAAGTATGTGTGGTACTATCGA CAACTAGCTGTGTAAACACACCTGGGTGAGTGACTTAACACCTGCTGAAA GCTGCGGACTTTCTCGACAGCAGATGGTGTAGGGGACATCTCGTGGAAGT TTCGACCCAAGTACCGAAACTAGCTGGCAGTGGCAAAAGCACATGCCGCC GCCGCGCCGCACATCGAGCAGGATCCGGGAAGCCTGTCGAGTCCATCACA TATTGACTGTTCCCATATTTTTGTGCTGTGTGCACCAATCCACCCACCCA CCCACCCACCCACGCCTGAGTCTCTCATGTTCATTTTATTCCTTTATTCT TTCCTCTTCCCTCTCTCCTCTGTGTATCGCCAACGCTGACGTTATCGTAT CGTATCGTGTCGTATCGTGTCGTATCGTGTCGTGTCGTGTCGCCGCGCCG CGCCGCGCCGCGCACGCGCGCGCGCGCGCAGGACCGGGTGGTCTCTCGAC GCCCCACCTACACCTGATGGAGTCCCCCGCAGACGTGATGCTGGCCTCCG ACGTGTGCCTGGTGTGCGTCCACACGGAGCAGCAGTCGATCGAGGCTCTG GCAGGGGAAGACGGGCTTCTCGCCGTGGGTACGAGGGAGATGGCGGACAA GGTCGGGTGCGCCGCGGAAGAGGCATTTTTTCTAAGAGCGTCGACTTGCC TTTTATCCTACCCTCTGTCCGTGTGTGTAAGTGTGCTCGTGTAGGCAGGT GTATGTAGAAGTGGAAGTGGAGGAAGCGTAGAAGTGTGTGTGCGTGAAGG TGGAAGTGGAAGTGCAAGCATGCGGGGAAGGATTTTCCCACAGGCAGCAA ACATATTTTCTCCGCTGTGCTGTTCTAACCCCAGGTTCCACCGCGGCACC TCTCTCTGCCTTGCTGCCCTTTCGTCCCCGTCGAGTCAACAACCGACGCT CGCGCCGCCGATTTGCCCCCATCACCCTCTGTTTCTGTTGTTGCTGTCCT TGGTCGATTCGTTTGTTCTTTTTCTTCATCGCTGTGTCTGCCTTTGGTGG ATGGATGGGTGGGTGGGTACATGTGTGTGTGTGTCGGGGGGGGGGGGGAA TCGGGTATATTCGCGGCGACGATACAGATCATCGTGGATCACGGGACCGT TTCTCCTCGGTTTGCGAAAGACATGTCTCAGACAGTCATCAAGGGCGGGG GGGCGTTTCTCGACGCTCCCATCAGCGGGGGGCCACAGGGCGCCCTTGAA GGTAGGACTTGGGTGAGGGTGGGGGTGGGGTGGGGTGGGGTGGGGTGGAG GGGAATACCGGTACGTGCGTCCTGTACATCATCACTACCAGCATGTGGTA CACACAGAGAAAAATATTCACGGAGCGATCTCCCAAGCGGCACTGCTGTG CAGTAGGCGGCGGAAGAGCCTGGTGCTTGGATTGTGTCGATATACTTTTT TCTCGTGAAAAATTGCAGTGCGGGTTTTGAATTTGGACAGACAGTAGTAG TACAATTGGTGTTTCACACATACGTTCGCACCCATGCTGTTGTTCCAACA TCAGCTCAACTCAATTGCGGTTTCGTTCTGTTCAGTGATCCCCCTAACTT TGTCTGATCGGCTCGGCGGCGTCCCCAGACTGCTGCAACGCTGCTCAAAA GTAGTACGTCCTTGCTGCGCCAGGTACTGCTACTCCTTTTCTTTTTGAGA CTGAAGTAGCGAAAAGAGAAGCCTCCGCCATGCAGTAAAACGTATCATAA ATCGTTTGCGTAGAACCAAATGAACAAGCCAACCCACTTTTTACTACAGT ACGGCGTAGTTTACGAGCAAAATAATTCATGCAAAAAATGAGCTTCGTAC AAAAATCGCACCTGTCGACCGCCGATAAAAAATTTCCCCACACGATCGGG TAGAACCGTTGAAGAAATCAACCCACTGCTGTAGTACGGTCTTGGTGCGT GCGTACTCCGAATCATAAGGCCCGACCGTAGAGTCAAATACTTCTGAAGT TGGAAAGAGCCCGCCCCCTGAATGACTGACTTTCAATTACTTTTAAGGTC GATCGTCTCCACGAGAAAGGTAAGTCGTTAGCGCCGAAAAAAAGTGTGCG TCGCTGGAAATGAAAAAAACTTGGTCGATCGAGAATTGCTGCGGTGTCCG AAAACGTTCTCAAGTGTATGTAAAATTGACGCCAATATCACCACCGTAGC CTGGAAGGAAGCAGCCCGTCGGTACGTTCCTACTCTTGACCCCGACACGA CCGTCCTGATCTGATCTGATGCGAAGGGACGTTGTCGATCATGGTCGGCG GCAAGAAAGAGCACCTCGACACGTGCTTGCCTGTGATGGAGGCCATGGGC AGCCGCGTCGAGCACATGGGGGGATGGGGGGCTGGGGCAGCCGCAAAGCT CGTAAATCAGGTATGCCATGATTTGCATCATGCAGCAGCAGCAGCAATAT TGTGCTGCAAAGAATAAATGTCGTGTGCTACGTACAGTTAGTCAGTAATT CTTCGTGTAGTCATATTATGCTACATGCAGTCAGTACGCCGTTGACCGTG AAATCACATCATATGTGGAGGGATGCATGGTATAAGAAGGAGGTAGAGAG AGAGAGAGGGAGGGAGCCCAACAACATGCAGTCAAAGGCGGAAGAGACTT GCGTTTTTTGTGGAGTGTGCTGCGTACATACTGCTTTGTGGTCATTATAT TGAACGAAGGGATGGGTTAAGGCTGCTGAAAGAAGCCCATATTACATCGG AATGACGCAGCAGTACGGAAACTAGGAGACGAAAGAGATCGAAACGATTG AAATGTGAAGACAACACACGCACGCACACATCATAACAACGCATTGCCTC ATCGGGGAGGCATCATCCAAGCTCGGGTCAATTCCTCGGTGAACTTCGTA GATAGATAACACAGCAGTATTGGCAGTGGGGAAGGGACCTGCCTGCCAAA CCCAGTCCTCAGTCAAGAGTTCGTAGATTACGCTGTCAAATACAAAAAAA AGCACAGAATCTCCAATCGATTTCTGCGTGTGTTTTGCTCGTCGTCGAAA GGGTTCTCTCCGGTACAGTACATGGTTTTCTCCCGACATCCAGAAACAAG CCACAAATTGCCCGTCACCTCTGCTCAACACAAAACAACTACCTGTGCAC CAAACCCTTCCGCTAGTTCCCGCAAACGTCCCGCAAACGTCCCTTCCTTG CTTCTGGGCGGTCTCTTCAAACTGAGTGTGTGCGTGCACAACCACACGCT TGCCAGACGTTTTCGTTTGCTGTGAACGACCGCTACCCGTCAGCAGGAGG GAGCGTTTGATGTAATGTAGGACATTGCTTGAAGCGCGTATCCTATCGAT CAAAACGCATTTTTGTTTTGCCGGTTCCCATCTTCCATTCGTTCGCCGGT CTATAAAATTATCTCTTTCGCTATGTCCCTATCGGTCTCTTTCTCTCGCT CCCTCCTTTTATACGCACCTGGGTGAACAGCCGGGTGCCACTCACCCAGG AGGGTCCCTTCTCTCATTCCCCCGAACGCCCCACCCTTTAACTCACCCAT GCTTCATTGTGCGCCATACAGTCTCTCGAGTGAGTTCACTTTTGCGTGAT TTTTCTCGTTTCTCGCGTTTGTTTGTTTGTCTGTTTCCCCCGAATTTTGG ACAGCACTTGGTGATTTCGAACACGGTGGCGGCCTGCGAAGCGTACGTTC TCGCGAGACGCTTGGGGCTGAGCGACACGGTCAAGCTCAAGACTCTTCTC GGGGTATCTTGGGGGCACAGGCGAGAGACGAAGCACGCAGGACGCGCACG TACATACCGAGTTATGCGCGTGGGTACGACGTGATGTGATGTACTCCGCA GCGAACGAACAATACGACAGCAGTAGCGGTGTGTCGACATCGTATGTTGG GTTTCCTCATGTGGCATTCCACGGGCCTTCTTTCTGATGGATCTCGCTGG ATCTTGGTTACCGGTAGATCCCTCCGAGTCCGAGGAAAGAGGCATCACAG GCGCGTGACCTCCCCTGCCGTCCCCTCCCCTCCTTCCCCTTTCCCCGCGT TGGGGCGAAAACGCAACGGAACAATCCCAAACCTCAAACCTCGACCCGTG TTCAAAACCAAACCGCGCTGCAGCCGAATGCTGGACCAAGTTCTCGAGGA CTTGATCAAGGTCGAAGAGGCGGGCGATGACGTCGAAATTCTGCGTAGAT CCCTGGCACCAATACGAACGCTCGGCAAGGACGCCGCCATCTTGGCGAGG GCTGCGGCGGAGAGCGGGGCATCCGCCTCGCTGCTTGAGTCCGCGCGTTC GCAGGTGAACGAAACAAAAACAAAGCGTTAAATGATATGGTGGTGAAATG TACTGCTGTATGCACAAGAAATTCACATACTGCTGTATCGCGCTGTGCCA AGCGTTTGCTTCTGTCGTGATGCATTTTGTCACTACCTCTCACGGTCAAA CAGCCAAAAAGAAAGAAGCACCTCAGTCAAATTGTGTAATGTAAAAAAAC AAGTATCTTCCTTCCTGTTACCAATAAGTGCCCTCCCTGAAAAAGCAACA ATTTTAAACTCACTTGTGCAAAATAAATTCTCCGATTGTACGATTGTGCA TTAGTGTGCATACTTCCTCTGTCTCATAAGTCTGTGCCATTATGTTTTTA CGCCCCCTTAATGGTGTCCGATGTCTTCGGCGATAATTTTTTCGAAATCT TCGGAGTTTTTTGGGTCGAAACACATTTTTTTTCTTTTCTTGCGCACTAC CCTGCATGGGCTAGCGGCTAACAAAAAAAAGTAGTCAGGCCAAAAATAGC CGTATTTGACCCTTTCCAGAGGTGGAGGGGGGGGGCGGGGGCACAAAAAA AAACAATGCAATCTCCCCCACAATTATCCCTAACCCTGAACCTAGCCCCC CTAACTCAAAGATTCATGTCGAGTCCCCCCTTACTAAAATCAGTATAATA GTGACGCCACACTAAAACCAAGACCATTGGGTTTTCCACACTAAAACGAA GATACTTGGGACTCATGCTCTAAAACCAAGACATGTGGCGGAATCAAATT TCTCAAAAATGGGCCAAAATGGGCATATTTTGACTTCATTTTAGTATAAA CAACTAGCTTTTTTTTTCTTTTCTTTTTTGCACCAGCTTCTTTGAGACTT CATCTTTCGAACGAACCTAACTATAGGATGATCGAAAGAGTATGGACGCG CAAACAATTACACGCATCTAACAGCCCAGACTTATGATACAGAGGAAGTA TATGATGATACGAAGGATGTTGTCACCTACCTCCATTCTGACCCATGTCA AAATGTCGAAACGATCGGAAGGAAGTTTTCAGCAAGGGCGCGAAAGTATG AAATTATCGTGTTTTTGGTTACACTCATATCTTGTACAGGCACGTCTTTT GTGGTCATGAGCGGCCACAGAAAAGGCAAACTGAAAAAGCATCTGATGTC AGAAAGTATGATACCATATGCACATGGCATGTTTCATGATCTTTATTTTC AAGACGGTCACAAATGCACCAAGGGAGTTCAGATTTGCTGGCACCTGCCG ATTCAGAAATCGGGCGTGTCACGTGCTTATATTGCACTTCTAGTAATGTA CTCGCTTTTGTCGCCGCTTAACAACTCCAGTCGTGTACCTCGTATTATCC GTTGTTGCCGCTTTCTTCGGAGTATATCCTACTTCGAAGTACAATTCTAC GCATTTACTCTCTCATCGCTGCTTGCGATTCTACCCGGTGGTAGTTAACT CTCTTTTGTCGCCGTTTCTTGCTTGCTGCTGGCACTACTGTAAATTATGC CTGCCGTGTTTTTTTGTTGTTGAAAGATTGACGAGACCATCAGGTCAGGT TACTCCGATTGCTCCTTCGCTTCCGTGGCCACTGTCATCGAAGAGGAGTT CTGCAAACCCAAAGACAAGGACGGCGGCAGCAGTGGGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:878534..887023-

>mRNA_P-littoralis_Contig20.203.1 ID=mRNA_P-littoralis_Contig20.203.1|Name=mRNA_P-littoralis_Contig20.203.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1017bp|location=Sequence derived from alignment at P-littoralis_Contig20:878534..887023- (Pylaiella littoralis U1_48)
ATGAGCCCCACGCTTCGAGTGGGCGTTGTGGGGCTGGGGAGGATGGGGTC
AGGGATGGCCCTCAACATCGCCAAGGCGGGTTTCCCTCTGTCCGTGTTCG
ACGCCGAGGAAGGGCGCACGCAGGAGCTGAGGGAGAGCTGGGTGAAGGAC
AAGCACCTGCCGACAGGACCGGGTGGTCTCTCGACGCCCCACCTACACCT
GATGGAGTCCCCCGCAGACGTGATGCTGGCCTCCGACGTGTGCCTGGTGT
GCGTCCACACGGAGCAGCAGTCGATCGAGGCTCTGGCAGGGGAAGACGGG
CTTCTCGCCGTGGGTACGAGGGAGATGGCGGACAAGATCATCGTGGATCA
CGGGACCGTTTCTCCTCGGTTTGCGAAAGACATGTCTCAGACAGTCATCA
AGGGCGGGGGGGCGTTTCTCGACGCTCCCATCAGCGGGGGGCCACAGGGC
GCCCTTGAAGGGACGTTGTCGATCATGGTCGGCGGCAAGAAAGAGCACCT
CGACACGTGCTTGCCTGTGATGGAGGCCATGGGCAGCCGCGTCGAGCACA
TGGGGGGATGGGGGGCTGGGGCAGCCGCAAAGCTCGTAAATCAGCACTTG
GTGATTTCGAACACGGTGGCGGCCTGCGAAGCGTACGTTCTCGCGAGACG
CTTGGGGCTGAGCGACACGGTCAAGCTCAAGACTCTTCTCGGGGTATCTT
GGGGGCACAGGCGAGAGACGAAGCACGCAGGACGCGCACTTCTCGAGGAC
TTGATCAAGGTCGAAGAGGCGGGCGATGACGTCGAAATTCTGCGTAGATC
CCTGGCACCAATACGAACGCTCGGCAAGGACGCCGCCATCTTGGCGAGGG
CTGCGGCGGAGAGCGGGGCATCCGCCTCGCTGCTTGAGTCCGCGCGTTCG
CAGATTGACGAGACCATCAGGTCAGGTTACTCCGATTGCTCCTTCGCTTC
CGTGGCCACTGTCATCGAAGAGGAGTTCTGCAAACCCAAAGACAAGGACG
GCGGCAGCAGTGGGTAA
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