mRNA_P-littoralis_Contig20.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.19.1
Unique NamemRNA_P-littoralis_Contig20.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:97885..99675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789972.2032204-CDS-P-littoralis_Contig20:97885..979411680789972.2032204-CDS-P-littoralis_Contig20:97885..97941Pylaiella littoralis U1_48CDSP-littoralis_Contig20 97886..97941 -
1680789972.2168386-CDS-P-littoralis_Contig20:98753..988071680789972.2168386-CDS-P-littoralis_Contig20:98753..98807Pylaiella littoralis U1_48CDSP-littoralis_Contig20 98754..98807 -
1680789972.2260733-CDS-P-littoralis_Contig20:99620..996751680789972.2260733-CDS-P-littoralis_Contig20:99620..99675Pylaiella littoralis U1_48CDSP-littoralis_Contig20 99621..99675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.19.1prot_P-littoralis_Contig20.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 97886..99675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.19.1

>prot_P-littoralis_Contig20.19.1 ID=prot_P-littoralis_Contig20.19.1|Name=mRNA_P-littoralis_Contig20.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
GGSNTVARRRYAGAHTSTGGSNTVARRRYAGAHTSTGGSNTVARRRYAAA
HTSTG
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mRNA from alignment at P-littoralis_Contig20:97885..99675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.19.1 ID=mRNA_P-littoralis_Contig20.19.1|Name=mRNA_P-littoralis_Contig20.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1791bp|location=Sequence derived from alignment at P-littoralis_Contig20:97885..99675- (Pylaiella littoralis U1_48)
GGTGGATCCAACACCGTCGCCCGTCGACGATACGCCGGAGCCCACACCAG
CACTGGTGAGTGTCGTTGCCCCATTGGTTGTATGTCGACTTTTTTGCCCC
CATGACCAAAGTTGCACAGACCATGGTGCCAGCATACACGCGTCAAACGT
GTGCCTCCCCGTATCGCCGTACCACAGCACTTGAGGTGGCGACTTGCTGC
TATACCTCGTGTATTGTAGCGAGGTACTTGTGAAGTATCATACCAATATT
CAAGTTTGCTTCCATCGCATTTCGGCTGGGCCGTTCAAAACAGCGGCTCA
GACGAGACTCCAGCTTGTGCTGAACATGTTTCCCACAACAGGAAAGGCTA
TGAGAAGGAATCTTCGTGCACCGTGCATATGAACTCCTGGCGCTCCGGCC
CTTGGCCCGTTCACTACTGTCTCTAGAACCTCATCAGTGCTAGCAAACGC
CGAGGGTGTTCGTCGGTTTCCCAACGTGGAAGTGGCGCCCTTGGGCGTTC
ACCGCGTGACCAGCGTCCTGAAAGCAAAAACCGGGTGTCGGGGCGCCCCC
TAGGGCGTCATGAAGGAACAACGCCCGCCACCCCCTCCCACTTCAGCCGC
GCGTGAGCCAGTGCTCTTCATATGATAACCCAGCAACATGACACGTTACC
TATCAAAAAGTTTCTCAAGACCACCCCGCCTGTAGCTTATTTTACCTTAT
TCACATGGATCGGGTCCAACGGAGGGCGTAATTGGCATGGTTGTTTTTCC
CCGTGGCGTCCGCCGGCAATATTTTTCAGTGCTGACTGTTGTTTATAACG
CCTACGCCCTCGTCCGACATGTCGTCTGTTCTCCGTTCGTACATCCACCG
CCGACGCCGGCGCCTCAGGTGGATCCAACACCGTCGCCCGTCGACGATAC
GCCGGAGCCCACACCAGCACTGGTGAGTGTCGTTGCCCCATTGGTTGTAT
GTCGACTTTTTTGCCCCCATGACCAAAGTTGCACAGACCATGGTGCCAGC
ATACACGCGTCAAACGTGTGCCTCCCCGTATCGCCGTACCACAGCACTTG
AGGTGGCGACTTGCTGCTATACCTCGTGTATTCTAGGGAGGTACTTGTGA
AGTATCATACCAATATTCAACTTTGCTTCCATCGCATTTCGGCTGGGCCG
TTCAAAACAGCGGCTCAGACGAGACTCCAGCTTGTGCTGAACATGTTTCC
CACAACAGGAAAGGCTATGAGAAGGAATCTTCGTGCACCGTGCATATGAA
CTCCTGGCGCTCCGGCCCTTGGCCCGTTCACTACTGTCTCTAGAACCTCA
TCAGTGCTAGCAAACGCCGAGGGTGTTCGTCGGTTTCCCAACGTGGAAGT
GGCGCCCTTGGGCGTTCACCGCGTGACCAGCGTCCTGAAAGCAAAAACCG
GGTGTCGGGGCGCCCCCTAGGGCGTCATGAAGGAACAACGCCCGCCACCC
CTTGCACTACAGCCGCGCGTGAGCCAGTGCTCTTCATATGATAACCCAGC
AACATGACACGTTACCTATCAAAAAGTTTCTCAAGACCACCCCGCCTGTA
GCTTATTTTACCTTATTCACATGGATCGGGTCCAACGGAGGGCGTAATTG
GCATGGTTGTTTTTCCCCGTGGCGTCCGCCGGCAATATTTTTCAGTGCTG
ACTGTTGTTTATAACCCCTACGCCCTCGTCCGACATGTCGTCTGTTCTCC
GTTCGTACATCCACCGCCGACGCCGGCGCCTCAGGTGGATCCAACACCGT
CGCCCGTCGACGATACGCCGCAGCCCACACCAGCACTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:97885..99675-

>mRNA_P-littoralis_Contig20.19.1 ID=mRNA_P-littoralis_Contig20.19.1|Name=mRNA_P-littoralis_Contig20.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig20:97885..99675- (Pylaiella littoralis U1_48)
GGTGGATCCAACACCGTCGCCCGTCGACGATACGCCGGAGCCCACACCAG
CACTGGTGGATCCAACACCGTCGCCCGTCGACGATACGCCGGAGCCCACA
CCAGCACTGGTGGATCCAACACCGTCGCCCGTCGACGATACGCCGCAGCC
CACACCAGCACTGGT
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