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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1178 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 714 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789972.303618-UTR-P-littoralis_Contig20:804020..804331 | 1680789972.303618-UTR-P-littoralis_Contig20:804020..804331 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig20 804021..804331 + |
| 1680789972.3152194-UTR-P-littoralis_Contig20:805103..805254 | 1680789972.3152194-UTR-P-littoralis_Contig20:805103..805254 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig20 805104..805254 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680789972.326467-CDS-P-littoralis_Contig20:805254..805564 | 1680789972.326467-CDS-P-littoralis_Contig20:805254..805564 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 805255..805564 + |
| 1680789972.335563-CDS-P-littoralis_Contig20:811242..811646 | 1680789972.335563-CDS-P-littoralis_Contig20:811242..811646 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig20 811243..811646 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig20.181.1 >prot_P-littoralis_Contig20.181.1 ID=prot_P-littoralis_Contig20.181.1|Name=mRNA_P-littoralis_Contig20.181.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MHIGSPMLRPLVHHQGGQDGATHQGDLADGLPHSSSNNNNNSNNFDALFS
ASSESLSSGSMVSSTSGSVASTVSSAGSAGAAAAVVVAASTPYYPRSSCT
SDDGTVCGEQQWLADAMSSSTGPGDVEAFFAGEGGGSGGGDGGTRLLQQS
AKQLLQQQRQQQSQRRPNNRIFAATSGSRTAGQGAALPDNIRLVLGGSRG
GGSDASTTSSSSFDIKSSSSSSSSSSSNGSSNNTEAAT back to topmRNA from alignment at P-littoralis_Contig20:804021..811646+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig20.181.1 ID=mRNA_P-littoralis_Contig20.181.1|Name=mRNA_P-littoralis_Contig20.181.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7626bp|location=Sequence derived from alignment at P-littoralis_Contig20:804021..811646+ (Pylaiella littoralis U1_48)
AGAGCCAACCCTTTTCCTCCCACCCGCTCCACACAACACACCATCCAGCA
GTCCACATATTCCGACATAAATATCGTACAGCAGTATTGTTGGTCGCCGA
TCCACCTATCTATGTCCCTGGTGTTTATTTAGTGCAGCCGGTTTGAGAAG
ACTGGTGGTGCTCGTTCGACTTGCCTGGGCAGCTGTGTGATTTGATCCGA
GGGGACACTGTTGTATACTGGCGGCTCCTGTCGTGCGTCATCCTGTCTTG
CCGAAAGCACCGAGAACGACCTTTTCTTCCTCTGCCTCTGTGAGGCTGGA
GGCGGAACAAGGTGAGAGGGGAAGAACATTGTATTGGCGCCAGTCTTGAG
GGAGTCAGAGAGGAATCCGTCGTGGTGTCTGTAGCGGGTACAGCACAAAT
TCGAATTTTCACTCTACTCCGCGCCCCTTCCCCTCCAGAGAGAGAGAGAT
AGGGAGATAGATAAAGAAAGGGAGAGAGGCAGCACAGCGGTGGTATGATC
TCAGCGCTCTCAAGGCCAAGATTCCTTGGAGGGTGGTTTCCATGTGCCCA
CGGGGTACTACGTATGGTTTGGGCTGCGCACACACCATTATGCAGATCCG
ATGTATGCACGGCAGACCACCCTCATGCAGCGACAACAACAAACAGAAGG
AGGATGCCCAAGTCAACCCTCTCTCTCGATCCGTGTTGTCCGTTCCGCGA
GGTCGTCACATGTAGTAGTATATTTGGGAATCTGCCTCAAAATGGCCAGT
AAGTACCTCGCGTGCTTCGTGCTTCCTCTCCACCTTGCTTGGGATTCTCA
TCAAGTTCTTGGTGTCTGACTTTCGTTGCCACGGGGTAATCGCGCGTCAT
CGTTTACTAATGCCCTCTTTATCTGCATGCTCTTTGTTTTTTGTTTTTTT
GTTGGCTATCTCACCCACCCACACACGGGGTGTAAGGCCACACTACTAGT
TAGAGCACATATACGTAGTCATATGATAGATAGGTCGTGTTCTACGGACA
GCGCGATTTGTCTTCTTCTCCTCTCCGCTCTGTTCATTCTCGATCGATCT
GCCAACCCTTCCTCGCGCCCTTTCGTATGCCAGAGCAGACACAAGAGAAG
GACGAAGCGAAGAGAAGAGAGTGGCGAGACACAAGGATCGAGTTGAGATC
GCGCACAAGACAGACAGAGGGAGACAGAGACAAGAGAGAGAGGGTGCGAG
GCGCATCATCAGCAAAATCCCCGTCATCAGCAGCATGCACATCGGCAGCC
CCATGCTCAGGCCCCTTGTTCACCACCAAGGAGGACAAGACGGAGCGACT
CACCAGGGAGATCTTGCAGATGGACTTCCGCACAGCAGCTCCAACAATAA
TAACAACAGCAACAATTTCGACGCGCTGTTTTCAGCCTCGTCTGAATCGC
TCTCTTCTGGCAGTATGGTCAGCAGCACAAGCGGCAGCGTCGCCTCGACG
GTTTCCTCTGCGGGATCGGCGGGAGCAGCAGCAGCAGTAGTAGTAGCTGC
TTCGACCCCCTACTACCCCCGATCTTCATGCACCAGCGATGATGGTGAGC
TGCCCCCAATCATAAGTAAGTACTTCAGCTGGGTCTATACGCGTTATTAT
TGACTTGTTTGTACGTAAAATCCCGATCACATGACATGAACGGACGAAGA
AGATTTTGACTTCAATTTACTACAACGCCAGCTCTCAGTCCACTCTTCTT
ACGGGTTGACTTTTACCATCTCCTCTGCCCCTCCTAATGTAATAAAAATC
TCATGTGCCCCCGCGGACAACATCAGGAGCACTGGTTCTGTAAAAGGAGA
TCTTCTTCCTCACGCTCAACTGCTGTGTACTTGCTCCTGTGATTGAAGTC
TTGAAGAATACGAAGTATCATGATATAATAGCACGAAGCTTTTTTAGTCC
CAGACAACTTTTGACTACCGTGTGTGGTACACACAAACAGACGGGGATAC
ATCAAACATCATACCGGTATATACTAAATGTAGTTCACAACCACACACGC
ACACCACACATCATACGTATGATACATACGATGCACCATCAGGTAATGGA
AGGACCACTGCGTCGATGGCAGGCACACAGAGCACACGATATATATCCAG
CCTGACCAGACACAGGGACTAAACACTTAACAGTCACCAACACAGGTCTT
GCATACAAATACTTCGTTAATACGGAGTAAGAACAGTCGGGCGATGATCG
GATGTTGTCCCCTCTTGAATTACATTGGATTAGATTGGAATTCCCCTACA
CACGTACTCCGTATGAAGTATCGTATCATATATATCTCGAGCTGGATATC
TCCGACCGTTGACAACCACCCGCTCAGCCCGTTCGTCTCGTGGACGACAG
AAAATCTGGGGCATTTATACTCATGGCTGGCTGCGGGGTCAGGTGGGTGT
GCGGGCGTGCAATGGGTCACGAGTTGGCCATCTGCCATCTAACTTCTTCG
TGCTGGAGATCGAAATCGAGTTATATACGAAAAAAAATCGCGAGATCGAT
CTCGATCCGGCCGAATCGGAGTTAATTTCGAAAGCTCGATGACACTACTG
CGTGCGCTGTTCTTCATGCACGGCACGGAAAAAAACCTTTTCTCTCAGCC
CTCCCCATTTTTTGTGTTTTTGTTTGTGTTTTTCCTCGTCCCCCCACCGG
TCTCCTGGTAGTCTTCTAGTGGTTCTGTTGTACTACTTGTAAACGGTCGT
AGGTTCGATTCTCTCTGAGAGCGTTTTTTACGTGGAAAGCGAGATACTCA
TGAGTAAACGAGGGAAGGGATTGCTGTACCCGACCCGCATTAAAAACCAA
AGGCAAGTATTGTACCGCATGAGGGAGCTTCTGGGCAATAAACCAAAATA
AAAAAACAAAAATCTCGTTCTGTGTTACCTTCTTTCTTTTCCTTCTGTGT
GCAACCCCGGCTGATGTGCATCCACTTTATTATACCGAAAGGGGTGTAGA
CTGACTGTAGACTGGTTCCCAGAATAAATGGGATGACAAAACACACACAC
GCACTACACCCCTTCTTAAATCGGTATTGATCTCACGATACGGCTGATGA
TCTCGATGTATCTCGACCCAAATATAGATCGATCCGCGTATCGGTATCGG
AATCCGACATTTTCTCAGGTATCGAATTAAGATCGAGTATATCGTGTTTT
TCTTCGGCGATCCAAAAAAATCGAATTACGTTTTTTTTTCCTTACAAATA
CATCAATCAATCAATGCGATCGCCTCTTCTTTCTACACGATTTAATATTT
TTCTGGGAAAATCCAACACTTCTCAATTAGCTATCATACGAAGTCAATCA
CTTTTGTACAGCAGAGTATATAATGATCTATCCTTTATATATACCAGGTA
TGTATATGTATTATAGGCGGGATCTTATGGGCCCCGTATTTGGGCCTCGG
ATCTTCAACATCCGTAGGAAAAAATTATCTTCGGACAACCTTATACGGAA
TTTGAGATTCCGGAGCCCAAAATATCCGGGCACTACAATCTGGGGTCGAT
TCCTCCGGATTTTGGGCCCAAAAACCGTGACGAGACAGCGCGGATTATTG
CTCACGGATTCGAGTTTTTGTTGCTGTTGTTGTTACAGTTTTACGAGGGC
CACACCACATCTCCGAGAGCGCACTCTGCAACCACAAAAAAAACAAAACC
CCACCCGATCCTCGCTGGGGCCTGGTTCGACCGCGTACGTTGTTGATTCT
CACATGAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCA
CATATCGTGCCAGGAGGAAAAAAAATAAAAAATAAAATATATGGACTATG
ATCACCCACAGTCAAATCAGATGTGGTACCGTTGGGGTACCATCTGTGGT
GGCCAGAATACGAAACAAAAACAGAAAAAAATAACAGGCTCGAAAGAAAA
ACAAAAATTGGAAACAGTCCGACAAACAAAAAATAACCAAGACAAACCTC
AACCATAACCATATACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAG
GGCCATGACAGACCAAGGCAAATAAAGGCAAACATACCAGGGCGATGGTC
CAGTAACTATATGATCAGTAGACGAAAGACAAAAAAAAAAAAGAAAAGAA
GGAGATACAAGGAGGGCACAAAGACTGAGGGAGTGCATTCATTCGTAGAC
AAACACAACAAACAGGCCGCCAAACAAAGAGGAAGCAGGGGAACGAAAAG
GGAAAGAAGACCGGACGTACCGGAAGTCGGGGGGGGGGGGGGGTGATAAA
AATCAAATAAAAGGCATGCAATCAATCGCAAACATGTCTTGCCACGAGGT
CTGCCTGTTCACGCTTACTCTCCTCAGTCGCACTCATGCCTCCTGCTACT
GGCACCACCGTACCCAGTTGTTTCTGCCCCACGTCTTTGGCAGCAGCTAC
ACCACCACTCCGCCCTTACGAAGCAGCGAACGATATGAGGAGCTCGTCGC
TCTTCTGGTGCAGTGTTTGTGTGTTATCTTTGCTGATTGAGTTATGGTGC
GGCCTGCCTCTCTCTGCTGCACACTATGACGCACGTGCGCCCGTTGTAAC
GTTTTGTATACGGAACCCATCCAACATGTCCCTGTTTGTGAGGATATACT
GCTGCTACACCGGGATCGTTATCCAGGGCCCCAAATCCGTGTTTGCCATA
AGGTTGGCTAATTAACATTTTTTTGCCCATCGTCGATGTTTGTCCGACGA
GACTTGAGGTCAGGCGCCCATGCGACGCCCTCATTATTATTATAGCGATT
TGCTCTGAATAGCGACGCCAAAATCTTTTGGCACCAATGCATACTGTACC
GATATATGTATAGCGACAATACCGTCGCTATGTCCGACGCATCATCCCTA
TATAGCGACGGTTTCGTCGACAAAGCGACGGTACACGTCGTCGCTATTAC
CTGTACCGGGGGCCCAGAATAGATGAGGTCAACACACACAAATTCAACCA
CAACCACTCACGAAACTCTTGTTTTGCAGGCTCGAAGCTTATTTTCTCTC
TGTCTGGGGTAACCCAATAGCGATTCCGTATGTTTGTATAGGTTTCATTG
TGGGGTTTGAATTGGGCACCTCTGTTCTTATGGCCAAATAAATTCAGTTG
TATTTTTCAAAAGTTTGTGGCTGGATTTAACTGCCAGTTTCTGAAGTAGT
GGTGGCCGCATCTATCTGTATTTGGTCTCAGAGCGAATAACAGTATGGAA
GGCGCATATTTCACAAACTCTCTGATTGTTAAATGGTACGTACCTCGAAG
TACGTACGTACGCGTACTTGTATCATACGTATGATATGATAGTGTTAGGC
TGTCTGTGCAGGACCAGGCATGTCTCTGACTGCTGCTGTGTCTTGCGTGT
TCCTTGAACCACAGGATGTGGCATATCATTCACTACGCCGTGGTATCATG
TCTCCTGCCTCACAGCAAACGCTACACTTACGAGTGGCAGTAATATCTTT
GCTCATATATCCCCCTCACACACCACAATCAATGTCCCCCCCCGCACCAC
ACATAGATTTCACCATGATAGTAAATGTATAAATGTTGAGAACATACGGT
ATGTCCCAACGAACCGTGGGTGTACAAGTATAATGTGGTGGTACGAATAT
GTTAGTGTGCGAAGTATTATTTCGTATTTTGTGCTTTTCTTCTTTGATGC
GGAGTGTTTCTTATTCAGAAGCGAAGATCTCCCGTCATCGTCGAAATAGC
CCAATGAGGATGGTACATTCATATGATTGTTGGCGCAATAATAACTTGGT
GCAGTGTATGAGCACAGGTGATGTTGGTCCCGTAAAATATGTCACCCTCA
ATCCTCTCTTCTCTCTGTGGTGGTGTCTGTGCTTGTTTTTGGGGATTGAT
GGTTGGTTTCAGATTGAATGTACTTTCTCGCCCGTGTAATGAAAAATGTG
GAGAAGGCGAGGCCGCCTGCCGCGGAGTAATCCACTGTAATGTACTCCCA
GAAGTGGTACTTCATACTGTTCATGAACGTGTATCATCTCGTACTTTAGC
TTTAACAATTACTGTTCATCGAAGCACCAGGTGAATCAGGGGTAATCAGA
TCCTTCCCGTGTCGACAAGATGTCACTCGAGAGAGACGAACAAACAGAGG
GCAATAATCGCACTTTTACCCCGCTGACGACACGGATGCTACGCTGTGCT
CCTGTGTGACTGATTGCTGCATGTCAAGGTCACAACCCAATGATAGCTTT
TCTCCGTTCTCCTCCGCATATGGTCGATCGGTAATAATATTATACCCTCA
GCATGCATACCTATCGCAATGTTACGTGACGAATTGAAGCCCGACAGATT
TCCTAAAAGTTCCAAAATATAGAAAGATAGATGAATGGATGGTGCGTGTT
CGTCCTTCGTAAACTTTTTATTCCATCGACATCGGGAGCACGTCAACATA
GTCGTCCGGATCGGGTCCATACAAACGGCTTCTTCTGTGTGTTGTGTTCG
AAAACAACCACAACACCACCACTGTGAATAAACGATGTCCGCGTTCAATT
GCATAGTTGCTGTCCGAAATCCGGAAAACCAGTGGCGCCTGAGGTGTCCT
TCAACAGCAATGGTTTACAACCGCATTATCGCTATATCGTAGCATCACTT
GAAATAATGTCGGGGATTTCCGCTCGGAGGGTACTACGGAATGGATAGCG
TCTTGGGGGGGGAGGGGGGGGTGGGTGATTTATCAACAAGCAGACGGCAG
CGAACTACGTCGTGAATGCTATTTCCTTTGAATTTTTCAGTTTCTTGGAA
AGAGTGCCTCAGGCAATGCATTAGAAAGTTAAGGGTTGTCGATCGGGGCG
TTGGCACCATCTCGTTCCAGAGCTTTCCAATTTCAGAAGCAGAGAGGTAT
CGTTTGAATTGGTGCCCTCTTGCTCGGCATTGTACCGTTGTCGGCCTCTG
ATAATCAGGGGAAGGAGGGTGTGTGTTTCGTGCGCGACCTTCAGCAGCCG
TGGGAATACTGCTAGGCCTACTTTGTATCACTCGCCATCGTGGCGTATTT
CGTTCGAATACGCCACAGCAGTATGAATGAAAGCAGCGATGTTGAAATAA
TGCCATGGTGGGTGGGCGATGACAGAATCAGTACCACCATGCATTTAGTC
GGTAAAACTCCCCATTTCATCCTGTAGCACAAATACGTGGTCAAATACTC
CCCTCTTTTTCCAGACATGCGCCGAGTCGACGTGGCATTTTTTGGATTGC
CCCACGCACCCTCTTGATATAGGAACTGTCTGTGGAGAGCAGCAGTGGCT
GGCAGACGCGATGTCCTCTTCCACCGGCCCCGGGGATGTCGAGGCATTTT
TCGCGGGAGAGGGAGGCGGTAGCGGTGGCGGCGACGGCGGTACGCGCCTC
CTGCAACAGAGCGCTAAACAGCTGCTTCAACAGCAGCGGCAGCAACAGTC
GCAGCGACGCCCGAACAACCGGATCTTTGCGGCCACATCAGGGTCCCGAA
CGGCCGGTCAAGGCGCAGCGCTTCCCGACAACATTAGGCTGGTTTTAGGA
GGAAGCCGAGGAGGAGGGTCTGACGCCTCAACCACCTCCTCGTCCAGCTT
CGATATCAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCA
GCAGCAACAACACAGAGGCGGCGACG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig20:804021..811646+ >mRNA_P-littoralis_Contig20.181.1 ID=mRNA_P-littoralis_Contig20.181.1|Name=mRNA_P-littoralis_Contig20.181.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig20:804021..811646+ (Pylaiella littoralis U1_48)
ATGCACATCGGCAGCCCCATGCTCAGGCCCCTTGTTCACCACCAAGGAGG
ACAAGACGGAGCGACTCACCAGGGAGATCTTGCAGATGGACTTCCGCACA
GCAGCTCCAACAATAATAACAACAGCAACAATTTCGACGCGCTGTTTTCA
GCCTCGTCTGAATCGCTCTCTTCTGGCAGTATGGTCAGCAGCACAAGCGG
CAGCGTCGCCTCGACGGTTTCCTCTGCGGGATCGGCGGGAGCAGCAGCAG
CAGTAGTAGTAGCTGCTTCGACCCCCTACTACCCCCGATCTTCATGCACC
AGCGATGATGGAACTGTCTGTGGAGAGCAGCAGTGGCTGGCAGACGCGAT
GTCCTCTTCCACCGGCCCCGGGGATGTCGAGGCATTTTTCGCGGGAGAGG
GAGGCGGTAGCGGTGGCGGCGACGGCGGTACGCGCCTCCTGCAACAGAGC
GCTAAACAGCTGCTTCAACAGCAGCGGCAGCAACAGTCGCAGCGACGCCC
GAACAACCGGATCTTTGCGGCCACATCAGGGTCCCGAACGGCCGGTCAAG
GCGCAGCGCTTCCCGACAACATTAGGCTGGTTTTAGGAGGAAGCCGAGGA
GGAGGGTCTGACGCCTCAACCACCTCCTCGTCCAGCTTCGATATCAAAAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGGCAGCAGCAACAACA
CAGAGGCGGCGACG back to top
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