mRNA_P-littoralis_Contig20.153.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: Q94Z20_PYLLI (Ribosomal protein S2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z20_PYLLI) HSP 1 Score: 109 bits (273), Expect = 1.250e-28 Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
FALESNI YLKW RGSLSKSQDVDLVFL+GVNRENLVEAHRKCLLLSGVGSSTMSKIA
Sbjct: 88 FALESNINYLKWKRGSLSKSQDVDLVFLSGVNRENLVEAHRKCLLLSGVGSSTMSKIA 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A0U1XC74_SCYLO (Ribosomal protein S2 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XC74_SCYLO) HSP 1 Score: 89.0 bits (219), Expect = 1.300e-20 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
FA E NI +KW RGSL+KS+DVDLVFL GV +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct: 88 FAKEQNINCIKWKRGSLAKSKDVDLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A3G5FPL4_9PHAE (Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.560e-19 Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
F L +N+ +KW RGSL+KS++ DLVFL+GV +ENLVEAHRKCLLL G+GSSTMSKI+
Sbjct: 88 FNLGANLNCIKWKRGSLAKSKNADLVFLSGVEKENLVEAHRKCLLLVGIGSSTMSKIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A4D6E513_9PHAE (Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E513_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.670e-19 Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 19 ESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
ESNI Y+KW R LSKS+DVDLVFL+ + +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct: 91 ESNISYIKWKRSYLSKSKDVDLVFLSDIEKENLVEAHRKCLLLVGVGSPTMSKIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: E6ZEQ5_ECTSI (Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ5_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 5.280e-19 Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
F +SNI +LKW RGS++KS+D DLV L V +ENLVEAHRKCLLL GVGSSTMS+I+
Sbjct: 88 FGQDSNINFLKWERGSITKSKDADLVLLTSVEKENLVEAHRKCLLLVGVGSSTMSRIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A8F0JZX1_9PHAE (Ribosomal protein S2 n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0JZX1_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 8.730e-19 Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query: 19 ESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
E NI Y+KW R L+KS+DVDLVFL+G+ +ENLVEAHRKCLLL GVGS TMSK++
Sbjct: 91 EPNINYIKWKRSYLAKSKDVDLVFLSGIEKENLVEAHRKCLLLVGVGSPTMSKVS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A2H4ZR15_9PHAE (Ribosomal protein S2 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR15_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 2.390e-18 Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
F E NI +KW RG L+KS+D DLVFL GV +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct: 88 FVKEPNINCIKWKRGVLAKSKDADLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: W5RG73_COSCS (Ribosomal protein S2 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG73_COSCS) HSP 1 Score: 82.4 bits (202), Expect = 6.820e-18 Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query: 4 LSFALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
L + + NI Y+KW R L+KS+D DLVFL+G+ +ENLVEAHRKCLLL GVGS TMSK++
Sbjct: 86 LCLSHDPNISYMKWKRSYLAKSKDADLVFLSGIEKENLVEAHRKCLLLVGVGSPTMSKVS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A0U1XD09_9PHAE (Ribosomal protein S2 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD09_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 9.090e-18 Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
F+ E NI ++W RGS+SKS++ DLV L GV +ENL+EAHRKCLLL G+GSSTMSKI+
Sbjct: 88 FSKEPNINCIQWKRGSISKSKNADLVILDGVEKENLIEAHRKCLLLVGIGSSTMSKIS 145
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A8F0K0H1_9PHAE (Ribosomal protein S2 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0K0H1_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 9.240e-18 Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
F+ E NI Y+KW R L+KS+D DLVFL+ + +ENLVEAHRKCLLL GVGS TMSK++
Sbjct: 88 FSHEPNISYIKWKRSYLTKSKDTDLVFLSDIEKENLVEAHRKCLLLIGVGSPTMSKVS 145 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig20.153.1 >prot_P-littoralis_Contig20.153.1 ID=prot_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp MLSFALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSback to top mRNA from alignment at P-littoralis_Contig20:622802..622993+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig20.153.1 ID=mRNA_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig20:622802..622993+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig20:622802..622993+ >mRNA_P-littoralis_Contig20.153.1 ID=mRNA_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig20:622802..622993+ (Pylaiella littoralis U1_48)back to top |