mRNA_P-littoralis_Contig20.153.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.153.1
Unique NamemRNA_P-littoralis_Contig20.153.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: Q94Z20_PYLLI (Ribosomal protein S2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z20_PYLLI)

HSP 1 Score: 109 bits (273), Expect = 1.250e-28
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            FALESNI YLKW RGSLSKSQDVDLVFL+GVNRENLVEAHRKCLLLSGVGSSTMSKIA
Sbjct:   88 FALESNINYLKWKRGSLSKSQDVDLVFLSGVNRENLVEAHRKCLLLSGVGSSTMSKIA 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A0U1XC74_SCYLO (Ribosomal protein S2 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XC74_SCYLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.300e-20
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            FA E NI  +KW RGSL+KS+DVDLVFL GV +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct:   88 FAKEQNINCIKWKRGSLAKSKDVDLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A3G5FPL4_9PHAE (Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.560e-19
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            F L +N+  +KW RGSL+KS++ DLVFL+GV +ENLVEAHRKCLLL G+GSSTMSKI+
Sbjct:   88 FNLGANLNCIKWKRGSLAKSKNADLVFLSGVEKENLVEAHRKCLLLVGIGSSTMSKIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A4D6E513_9PHAE (Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E513_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.670e-19
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   19 ESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            ESNI Y+KW R  LSKS+DVDLVFL+ + +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct:   91 ESNISYIKWKRSYLSKSKDVDLVFLSDIEKENLVEAHRKCLLLVGVGSPTMSKIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: E6ZEQ5_ECTSI (Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.280e-19
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            F  +SNI +LKW RGS++KS+D DLV L  V +ENLVEAHRKCLLL GVGSSTMS+I+
Sbjct:   88 FGQDSNINFLKWERGSITKSKDADLVLLTSVEKENLVEAHRKCLLLVGVGSSTMSRIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A8F0JZX1_9PHAE (Ribosomal protein S2 n=1 Tax=Laminaria ephemera TaxID=309364 RepID=A0A8F0JZX1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.730e-19
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1
Query:   19 ESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            E NI Y+KW R  L+KS+DVDLVFL+G+ +ENLVEAHRKCLLL GVGS TMSK++
Sbjct:   91 EPNINYIKWKRSYLAKSKDVDLVFLSGIEKENLVEAHRKCLLLVGVGSPTMSKVS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A2H4ZR15_9PHAE (Ribosomal protein S2 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR15_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.390e-18
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            F  E NI  +KW RG L+KS+D DLVFL GV +ENLVEAHRKCLLL GVGS TMSKI+
Sbjct:   88 FVKEPNINCIKWKRGVLAKSKDADLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: W5RG73_COSCS (Ribosomal protein S2 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG73_COSCS)

HSP 1 Score: 82.4 bits (202), Expect = 6.820e-18
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    4 LSFALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            L  + + NI Y+KW R  L+KS+D DLVFL+G+ +ENLVEAHRKCLLL GVGS TMSK++
Sbjct:   86 LCLSHDPNISYMKWKRSYLAKSKDADLVFLSGIEKENLVEAHRKCLLLVGVGSPTMSKVS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A0U1XD09_9PHAE (Ribosomal protein S2 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD09_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.090e-18
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            F+ E NI  ++W RGS+SKS++ DLV L GV +ENL+EAHRKCLLL G+GSSTMSKI+
Sbjct:   88 FSKEPNINCIQWKRGSISKSKNADLVILDGVEKENLIEAHRKCLLLVGIGSSTMSKIS 145          
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Match: A0A8F0K0H1_9PHAE (Ribosomal protein S2 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0K0H1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.240e-18
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   10 FALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLSGVGSSTMSKIA 183
            F+ E NI Y+KW R  L+KS+D DLVFL+ + +ENLVEAHRKCLLL GVGS TMSK++
Sbjct:   88 FSHEPNISYIKWKRSYLTKSKDTDLVFLSDIEKENLVEAHRKCLLLIGVGSPTMSKVS 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q94Z20_PYLLI1.250e-2894.83Ribosomal protein S2 n=1 Tax=Pylaiella littoralis ... [more]
A0A0U1XC74_SCYLO1.300e-2075.86Ribosomal protein S2 n=1 Tax=Scytosiphon lomentari... [more]
A0A3G5FPL4_9PHAE4.560e-1968.97Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranu... [more]
A0A4D6E513_9PHAE4.670e-1974.55Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=3... [more]
E6ZEQ5_ECTSI5.280e-1968.97Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosu... [more]
A0A8F0JZX1_9PHAE8.730e-1970.91Ribosomal protein S2 n=1 Tax=Laminaria ephemera Ta... [more]
A0A2H4ZR15_9PHAE2.390e-1870.69Ribosomal protein S2 n=2 Tax=Endarachne binghamiae... [more]
W5RG73_COSCS6.820e-1863.33Ribosomal protein S2 n=1 Tax=Costaria costata TaxI... [more]
A0A0U1XD09_9PHAE9.090e-1865.52Ribosomal protein S2 n=1 Tax=Colpomenia peregrina ... [more]
A0A8F0K0H1_9PHAE9.240e-1865.52Ribosomal protein S2 n=1 Tax=Dictyoneurum californ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:622802..622993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789978.5543938-CDS-P-littoralis_Contig20:622801..6229931680789978.5543938-CDS-P-littoralis_Contig20:622801..622993Pylaiella littoralis U1_48CDSP-littoralis_Contig20 622802..622993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.153.1prot_P-littoralis_Contig20.153.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 622802..622993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.153.1

>prot_P-littoralis_Contig20.153.1 ID=prot_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
MLSFALESNIYYLKWNRGSLSKSQDVDLVFLAGVNRENLVEAHRKCLLLS
GVGSSTMSKIAVL*
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mRNA from alignment at P-littoralis_Contig20:622802..622993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.153.1 ID=mRNA_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig20:622802..622993+ (Pylaiella littoralis U1_48)
ATGTTAAGCTTCGCATTGGAATCAAATATCTATTATTTGAAATGGAACAG AGGATCTTTATCCAAATCTCAAGATGTTGATTTAGTTTTTTTAGCGGGGG TTAATAGGGAAAATTTAGTAGAGGCGCATCGTAAATGTCTATTATTGTCA GGAGTTGGTAGTTCAACAATGAGTAAAATAGCGGTTCTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:622802..622993+

>mRNA_P-littoralis_Contig20.153.1 ID=mRNA_P-littoralis_Contig20.153.1|Name=mRNA_P-littoralis_Contig20.153.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig20:622802..622993+ (Pylaiella littoralis U1_48)
ATGTTAAGCTTCGCATTGGAATCAAATATCTATTATTTGAAATGGAACAG
AGGATCTTTATCCAAATCTCAAGATGTTGATTTAGTTTTTTTAGCGGGGG
TTAATAGGGAAAATTTAGTAGAGGCGCATCGTAAATGTCTATTATTGTCA
GGAGTTGGTAGTTCAACAATGAGTAAAATAGCGGTTCTTTGA
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