mRNA_P-littoralis_Contig20.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.150.1
Unique NamemRNA_P-littoralis_Contig20.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 6.960e-119
Identity = 184/226 (81.42%), Postives = 205/226 (90.71%), Query Frame = 2 
Query:   80 MNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNI-FSPL-NYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLPA 751
            MNIFR  GDMSHTASIL+LLLKLRASKSAAGISLKTQELFLV+F++RY+DLFFRF SWYNS MKVLYI+LTSLIIY +RE  PIKATYD+SQDSFLHW+FAVAPCA +GL++H W  W  ++ FS L N+FW FSEVLEP AIVPQLM+LQRYREVENLTGHYVFLLG YRSLYIVNWVYRA+ E GY+H++LVY+AGLVQTLLYADFFYYYAISKYYGGRMSLPA
Sbjct:    1 MNIFRLAGDMSHTASILMLLLKLRASKSAAGISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPFSSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADFFYYYAISKYYGGRMSLPA 226
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: B7G303_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G303_PHATC)

HSP 1 Score: 285 bits (728), Expect = 2.110e-88
Identity = 142/224 (63.39%), Postives = 178/224 (79.46%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MNIFR  GDM H  SI+VLLL+LR +K+A GISL+T ELFL++F++RYLDLFF F+S YNS MKVLYI  T+ I+YT+R K PIK+TY++SQD+FLHWKFAVAPC  + L+ HL    GS  F  +   W FS  LE +AI+PQL++LQRYREVENLTG+Y+F +G YR+LYIVNW+YRA+TE GYKH+ +VY  G+VQTLLYADFFYYY  SK  GG+ +LP
Sbjct:    2 SMNIFRLAGDMCHVFSIIVLLLRLRVAKNAQGISLRTNELFLLVFVTRYLDLFFNFFSIYNSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALITHLI---GSKRFDMVELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEKGYKHHWVVYFCGVVQTLLYADFFYYYLKSKSKGGKFTLP 222
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA)

HSP 1 Score: 283 bits (725), Expect = 4.480e-88
Identity = 146/224 (65.18%), Postives = 177/224 (79.02%), Query Frame = 2 
Query:   80 MNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLPA 751
            MNIFR  GD+ H ASIL+LLLKLRASK+A+GISLKTQELFL +F+ RYLDLF  FYS YNS MKVLYI+LT+LII+ +R + PI+ TYD SQD+FLH K+AVAPCA +  +  L        F   + FW FS  LE +AIVPQL++LQRYREVENLTGHY+F LG YR+LYI+NW+YR++ E GYKH+ +VY AG+VQT LY DFFYYYAISKY GG+ SLP+
Sbjct:    1 MNIFRLVGDLCHLASILLLLLKLRASKNASGISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQG-----FDVRDLFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDFFYYYAISKYRGGKFSLPS 219
[Close]
BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: F0YI66_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI66_AURAN)

HSP 1 Score: 283 bits (723), Expect = 9.170e-88
Identity = 144/223 (64.57%), Postives = 174/223 (78.03%), Query Frame = 2 
Query:   80 MNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            MN+FRF GDMSH  SI+VL+L+LR SKSA GISLKTQELFL++F++RYLDLF  FYS YNS MKV YI+ T+ IIY +R K P K+ YD+SQDSFLH+KFAVAPCA++ L   L         +P++  W FS  LE LAIVPQL +LQRYREVENLTGHYVF LG YR LYI+NWVYR+Y E  Y+H  LVY++G +QT LY DFFYYY +SKYYGG+++LP
Sbjct:    1 MNLFRFAGDMSHVVSIIVLILRLRVSKSAVGISLKTQELFLIVFMTRYLDLFTTFYSMYNSFMKVAYITATASIIYMIRFKEPYKSKYDKSQDSFLHFKFAVAPCAMLALFSCLIK----RELNPVDVLWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRFLYILNWVYRSYYEPFYRHNWLVYISGAIQTALYVDFFYYYIVSKYYGGKLTLP 219
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A7S3ZPQ8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPQ8_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.480e-86
Identity = 149/226 (65.93%), Postives = 173/226 (76.55%), Query Frame = 2 
Query:   71 AGAMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            A  MNIFRF GDMSH  SILVLLL+LR+SKSA GISLKTQELFL++F++RYLDLF  FYS YNS MKV YI+ T+ II+ +R + P K+ YD SQDSFLH KFAVAPCA + L   L         SP++  W FS  LE LAIVPQL +LQRYREVENLTGHYVF LG YR LYI+NWVYR+Y E  Y+H  LVYV+G VQT LY DFFYYY +SKYYGG+++LP
Sbjct:   71 AAKMNIFRFAGDMSHVVSILVLLLRLRSSKSAVGISLKTQELFLIVFVTRYLDLFTTFYSLYNSFMKVAYIASTTYIIWMIRFQEPYKSKYDASQDSFLHIKFAVAPCAGLALFACL----VKGELSPIDILWTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRGLYILNWVYRSYYEQFYRHNWLVYVSGAVQTALYVDFFYYYVVSKYYGGKLTLP 292
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A7R9ZM06_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZM06_9STRA)

HSP 1 Score: 280 bits (717), Expect = 4.080e-86
Identity = 135/224 (60.27%), Postives = 178/224 (79.46%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MNIFRF GDMSH  SI+VLLL+LR +++A GIS+++ ELFL +F++RYLDLFFRFYS YNS MK++YI  T+ IIYT++ K PIK+TYD+SQD+FLHW+FAVAPCA++    H+    G   F  +   W+FS  LE +AI+PQL++LQRY+EVENLTG+Y+F +G YR+LYI+NW+YRA TE GYKH+ +VY  G++QTLLYADFFYYY  +K  G R+ LP
Sbjct:   47 SMNIFRFLGDMSHLFSIIVLLLRLRVARNAQGISVRSHELFLCVFVTRYLDLFFRFYSIYNSVMKIIYIGSTASIIYTIKYKEPIKSTYDKSQDTFLHWRFAVAPCAIIAFATHMIAK-GMKGFDAIELLWMFSIYLEAIAILPQLIVLQRYKEVENLTGNYIFFMGAYRALYILNWIYRANTEKGYKHHWVVYFCGVLQTLLYADFFYYYIKAKARGNRLQLP 269
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A7S2MV43_9STRA (ER lumen protein-retaining receptor n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MV43_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.430e-85
Identity = 139/224 (62.05%), Postives = 177/224 (79.02%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MNIFR  GDMSH  SI+VLLL+LR +K+A GIS++T ELFLV+F++RYLDLF  FYS YNSCMK+LYI  T+ IIY +R   PI +TYD++QD+FLHWKFAV PCA++  + H+  S G +I SP+   W FS  LE +AI+PQL++LQRYREVENLTG+Y+F +G YR+LYI+NWVYRAY E  Y+H+ +VY  G++QTLLYADFFYYY  SK  GG+ SLP
Sbjct:    2 SMNIFRLSGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLVVFVTRYLDLFTTFYSLYNSCMKILYIVTTAAIIYMIRFSEPICSTYDKAQDTFLHWKFAVLPCAIIATITHMIGS-GLSI-SPIELLWTFSIYLESVAILPQLIVLQRYREVENLTGNYIFFMGAYRALYILNWVYRAYYEPFYQHHFVVYFCGVLQTLLYADFFYYYVKSKAKGGKFSLP 223
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BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A7S1UWG6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWG6_9STRA)

HSP 1 Score: 277 bits (709), Expect = 2.900e-85
Identity = 138/224 (61.61%), Postives = 176/224 (78.57%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MNIFR  GDMSH  SI+VLLL+LR +K+A GIS++T ELFL +F++RYLDLF  FYS+YNS MK+LYI  T+ IIYT++ + PIK+TYD++QD+FLHWKFAVAPCA+V  + H+  S G   F  +   W FS  LE +AI+PQL++LQRYREVENLTG++VF +G YR LYI+NW+YRA+TE GYKH+ +VY  G++QTLLYADFFYYY  S   GGR  LP
Sbjct:   22 SMNIFRLAGDMSHVFSIIVLLLRLRVAKNAQGISVRTHELFLCVFVTRYLDLFTTFYSFYNSIMKILYIGSTASIIYTIKFQEPIKSTYDKAQDTFLHWKFAVAPCAIVAFLTHMIGS-GIAKFELMELLWTFSIYLESIAILPQLIVLQRYREVENLTGNFVFFMGAYRFLYILNWIYRAHTEHGYKHHWVVYFCGVLQTLLYADFFYYYVKSVRSGGRFKLP 244
[Close]
BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A1Z5KJM8_FISSO (ER lumen protein retaining receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJM8_FISSO)

HSP 1 Score: 273 bits (698), Expect = 6.090e-84
Identity = 139/224 (62.05%), Postives = 177/224 (79.02%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MNIFR  GDMSH  SILVLLL+LR +K+A GIS++T ELFL++FL+RYLDLF  FYS YNS MK+LYI  T+ IIYT++ + PIK+TYD+SQDSFL+W+FAVAPCA++  V HL  S G + FS +   W FS  LE +AI+PQL++LQRYREVENLTG+Y+F +G YR LYI+NW+YRA  E  Y+H+ +VY+ G++QTLLY DFFYYY  SK  GGR +LP
Sbjct:    2 SMNIFRLAGDMSHVFSILVLLLRLRVAKNAQGISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVTHLIGS-GISGFSFIELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRANFEAHYQHHWVVYICGVLQTLLYVDFFYYYFKSKKSGGRFTLP 224
[Close]
BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Match: A0A7S2EAQ3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAQ3_TRICV)

HSP 1 Score: 273 bits (699), Expect = 1.820e-83
Identity = 134/224 (59.82%), Postives = 174/224 (77.68%), Query Frame = 2 
Query:   77 AMNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLDLFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKFAVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQRYREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQTLLYADFFYYYAISKYYGGRMSLP 748
            +MN+FR  GDMSH  SI++LLL+LR +++A GISL+T ELFL++F++RYLDLF  FYS YNSCMK+LYI  T  IIY +R + PI +TYD++QD+FLHW+FAVAPCA++  + HL  S G   F  L   W FS  LE +AI+PQL++LQRYREVENLTG+Y+F +G YR+ YIVNWV+RAY E  Y+H+ +VY  G++QTLLYADFFYYY  SK  GG+ +LP
Sbjct:   44 SMNLFRLSGDMSHVFSIIILLLRLRVARNAQGISLRTHELFLLVFVTRYLDLFTTFYSLYNSCMKILYIFTTGSIIYMIRFQEPICSTYDKAQDTFLHWRFAVAPCAIIATITHLIGS-GLKNFELLELLWTFSIYLEAIAILPQLIVLQRYREVENLTGNYIFFMGAYRAFYIVNWVWRAYHEPAYQHHFVVYFCGVLQTLLYADFFYYYVKSKSKGGKFTLP 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJM2_ECTSI6.960e-11981.42PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2... [more]
B7G303_PHATC2.110e-8863.39Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A835Z6E1_9STRA4.480e-8865.18ER lumen protein retaining receptor-domain-contain... [more]
F0YI66_AURAN9.170e-8864.57Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A7S3ZPQ8_9STRA1.480e-8665.93Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7R9ZM06_9STRA4.080e-8660.27Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S2MV43_9STRA1.430e-8562.05ER lumen protein-retaining receptor n=1 Tax=Helico... [more]
A0A7S1UWG6_9STRA2.900e-8561.61Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5KJM8_FISSO6.090e-8462.05ER lumen protein retaining receptor n=2 Tax=Fistul... [more]
A0A7S2EAQ3_TRICV1.820e-8359.82Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:608654..616224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJM2
Preferred nameERD2A
PFAMsER_lumen_recept
Model size2045
Max annot lvl2759|Eukaryota
KEGG koko:K08235,ko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categoryother localisation
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
Exons7
Evalue2.07e-126
EggNOG OGsCOG5196@1|root,KOG3106@2759|Eukaryota
EC2.4.1.207
DescriptionER retention sequence binding
Cds size675
COG categoryU
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.150.1prot_P-littoralis_Contig20.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 608733..614933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789978.4167235-UTR-P-littoralis_Contig20:608653..6087321680789978.4167235-UTR-P-littoralis_Contig20:608653..608732Pylaiella littoralis U1_48UTRP-littoralis_Contig20 608654..608732 +
1680789978.5239453-UTR-P-littoralis_Contig20:614933..6162241680789978.5239453-UTR-P-littoralis_Contig20:614933..616224Pylaiella littoralis U1_48UTRP-littoralis_Contig20 614934..616224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789978.4358966-CDS-P-littoralis_Contig20:608732..6088231680789978.4358966-CDS-P-littoralis_Contig20:608732..608823Pylaiella littoralis U1_48CDSP-littoralis_Contig20 608733..608823 +
1680789978.4451914-CDS-P-littoralis_Contig20:610343..6104341680789978.4451914-CDS-P-littoralis_Contig20:610343..610434Pylaiella littoralis U1_48CDSP-littoralis_Contig20 610344..610434 +
1680789978.454391-CDS-P-littoralis_Contig20:611852..6119461680789978.454391-CDS-P-littoralis_Contig20:611852..611946Pylaiella littoralis U1_48CDSP-littoralis_Contig20 611853..611946 +
1680789978.4742248-CDS-P-littoralis_Contig20:612647..6127521680789978.4742248-CDS-P-littoralis_Contig20:612647..612752Pylaiella littoralis U1_48CDSP-littoralis_Contig20 612648..612752 +
1680789978.4869323-CDS-P-littoralis_Contig20:613372..6134661680789978.4869323-CDS-P-littoralis_Contig20:613372..613466Pylaiella littoralis U1_48CDSP-littoralis_Contig20 613373..613466 +
1680789978.5025043-CDS-P-littoralis_Contig20:614039..6142021680789978.5025043-CDS-P-littoralis_Contig20:614039..614202Pylaiella littoralis U1_48CDSP-littoralis_Contig20 614040..614202 +
1680789978.5126643-CDS-P-littoralis_Contig20:614896..6149331680789978.5126643-CDS-P-littoralis_Contig20:614896..614933Pylaiella littoralis U1_48CDSP-littoralis_Contig20 614897..614933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.150.1

>prot_P-littoralis_Contig20.150.1 ID=prot_P-littoralis_Contig20.150.1|Name=mRNA_P-littoralis_Contig20.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=225bp
MNIFRFFGDMSHTASILVLLLKLRASKSAAGISLKTQELFLVIFLSRYLD
LFFRFYSWYNSCMKVLYISLTSLIIYTVREKHPIKATYDRSQDSFLHWKF
AVAPCALVGLVVHLWDSWGSNIFSPLNYFWIFSEVLEPLAIVPQLMMLQR
YREVENLTGHYVFLLGTYRSLYIVNWVYRAYTEFGYKHYILVYVAGLVQT
LLYADFFYYYAISKYYGGRMSLPA*
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mRNA from alignment at P-littoralis_Contig20:608654..616224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.150.1 ID=mRNA_P-littoralis_Contig20.150.1|Name=mRNA_P-littoralis_Contig20.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7571bp|location=Sequence derived from alignment at P-littoralis_Contig20:608654..616224+ (Pylaiella littoralis U1_48)
CTCACGGACGCACCTGGCGAGACGCATATACGTCGATTTTCTGTTGGGAG
CGGACGCGCGAAAGGCGGCAGCAGGGGCCATGAATATCTTCCGGTTCTTC
GGCGACATGTCGCACACGGCCAGCATCCTGGTCCTGCTGCTGAAGCTGCG
AGCTTCCAAGAGTGCCGCAGGTATGCCCGACATACCAAAGGAGAGGGAAT
ATAATACGTCCAGTAGTCGGAAAGAGTACTTCAGTAAAACGGTTTCGTTT
GTTCCACGTAGACGAACACACGAACGAGGAGCAATGCCGCTGCAAACACC
AGGAGCAACAGCAGTGCCAGCAGCCGCTTCGATAAGTGCCGTGTGCTGCT
AAAAACCCTTCCACCTCCCCTCCCAGGTAGGGCTGTGATCAAATCAGCAG
GCGAGAAGGAAGTGCACCGTAAAAGTTAAAGTTGTGCAGCAGGCCGCGTT
TCATCCAAAGAACAAGGTCGGTTCGTGTCATATCATACTGGTATACTTGT
ATACGAAGTACTCGGAGTACTAAGTACTCCGGAGTATAGCTTTTGGCACA
TCTCATCAATCAAGGTAAAATAGCCAAGCCGGCCTCAGCCGGGTCCGTGT
CGAGGTCGTCCGTATCGTCCGTCTCTCCATCACAACAAGAGGAACAGTAG
CAGACAGCAGCAGTGCGAGCCTGTTCGCTGCTCGAGTCTACACAAAATTG
GCTAAACTAATCGCGGTTGTCATGCTACATATGATGTGATCGTACACGGC
GGTGTAAATGGATTTGTTCTGTGAGGCAAAATGAGAAATCAGCAATGAAG
TACGTGTGATGGGGTCCAATTCTCCGAGACAACCGGCGTTTGATATCACA
TCAGATATGATGATGTGATATCAAACAGTTTACGTCAATCCTGTTTTGTC
TCTCAGCTCTCAGCAGTATCTTACGCTTTCACAGCAACGTGCTTCAGCAC
ATCCTCCGTACTTCGTAGTAGCTCGCATCATATCATACACCTGGAACGCT
ACGTACGTGATGGAGGCACGTGCATCGGCCATACACTGGCGTCGGCTGCA
ATCTATCAGAATACCAAACCCCTTCCACGGCCGTCCATGAGATTCTGCAC
AATACATCACTGTACGTCTTTCCAAAGGCCACAGCCCAGCGTTTTCGGCG
CTACCACTCTTGCTGCTACTGCTGTGATAATGCCGTACAAGCAGTATCAA
ACTTGAATACGTTTTCGGTCTGGGGCGGGGGACGGGGTGGTGACCTCAAG
AGATGTTTACGGTAATGGCTACTGCTGTTATACCACAAGTTGTTTCACTT
CGTTGAATCCCGCCGCGACGTGAACGTCTCTGTTGTGTGTTCGTGTGTGC
ACGTGTGCGTGTGCCCCATGTTGCCTCTTGTGGTAGCTTTTGGCGTGTGC
CGCGCTGCCTCTTTCTGAGAGTTCAGGCGCGCTTCGTATTCTGTCATCAT
ATACCATGTGTACACCACACGGCAAGCACGGTGTCCCACGCGCCCCATCA
CTGCTTTAATTGTGGTAAATACTGGTCTGCTCTGTGTGTAGGTGTGTTTT
CGACCCTTTCCATCACCACTGCGATGTTTATCTGTGCCATTCGTTTCCTC
ACGATGGAGGACACAGAAGGTAAAGCTATCCTCAAAGTGTCCTTCTCCCT
TCCCTCCCTGCCCCCGTCCCCTCTATTGTTTCCTTTCCAGGCATCTCGCT
GAAAACGCAGGAGCTGTTTCTCGTAATCTTCTTGTCCCGATACTTGGATC
TTTTCTTCCGGTTCTACTCTTGGTACAACAGGTGCGGGTGGGGTTTTAGT
CGGCCAGGAAGGCGTGTCTCAATCAGTCCTTTATCTGCAATGGGCTACTT
GGATTCAGGGGGGGGGGGGAGCGGGAGTCGGGGGGTAAGAAACTCCGATT
TGTCTTTTGAGGTTTTGTTTCAGAGAGATGAAGGATAACAACATAGTCTA
CCTGGTAGTTGTTTTCAATGAGGCTGCGATACAGATATAGGCAATTTGAA
GCCAATCAGCCTACAACACCTGCATGCAGCGAGGTTTTCGGGATTACTTT
TGCGATTTTCTTGCACGTCGAAAGCAGCAAAAGCAGCAGCAGCAGCAGCA
GCAGCAACAGCAGCGAGTGACTTGGTTCGCTTGCTTAAACAAAAAATCTG
CTCGCCTTGGCTTCTTATTTATTATTTCAATTTTCAAAAAACTTTTTGCG
AGTAAGCACGGTGAGCGTCGGACATGTATCTGTGATCTGGCTTTCGAGAA
ACCCTGACAAAAGGATTTTAACCCTTTCATGCCATGCCATGCCATGCCAT
GCACTGTGAACGGCGCGGGCGCAGCCGCTGAGACAGTATTGACATTGAAA
CATCACCCTAGACCGCGGCTCAAATTGCCGCTTACCTATACACTTGAGAG
TTATTCCCGCCCCCACGGACCGATTTCAAACCTTGGCCACCATACTCCGT
GGCGAAAGGGGTGCCAGCTCCAAAAATGAGCGGTTTGGTGGTGGAAAGGT
CTTGTCTTGTCGAGAGCTCTCGGAAAACCTATCGATCGGTTGGAGCTGGC
ACCCTCTTGGGAGTATTCGAGCTTTGGCACTAAGTAGGCGGTTTTCACGA
GGGGGGCGGGGGGGCGGGGAGTTGCGGCCCCTCGTCTACCCGCTCTTGCG
GATTTTTTTCTCATCCCGATTGTTCCGCCACGAGACCGACACCGCGGGAA
AACACGAGGCACGTTTACGCCCTATTTCTGGAAAATCTATTCGGGGGAGG
GGGGGGTGATAACTTGTATCATGTTGCTGCATGCCGGTACCCTCTACTGC
CGTAGGCCCCCGACCTCACGTTCCTTGAATTGAAAGGAATCATTTATGTT
CGTGGAGATGCCGACCCCTCCCCTCGCCCTTTTTTCCTCGACTTGAAGAC
AAGACCTGTTGCATCCTTTGCCGCCATCCCCTGACGTCACGACCTATAAA
CTATTTTCTGCTCATTAATCCCGACGCTCTTTGCCTTTTGCCTGCTTGCC
TACCTGTCGATCGCCTCCCCTGCCCCCCCCGCCCCCCTTCCGCTTTTTTC
TCTTCTGGCGGGGTGCAAACACCAACGCCACCGCCGCCGCCACCACCACC
CCCGTCGCCGCCGCGCGTATGGGTCATTATACCCCCGCGGTGGAACGAAT
CTGGTCTTGGCCTTCCTCTCTCGTCGGACACGAAACGTCACAACACCAGC
TGCATGAAAGTCCTGTACATCTCTCTGACCAGCCTCATCATCTACACGGT
TCGAGAGAAGCACCCCATCAAGGCCACCTACGACAGGTCGCAGGTATTGA
TTCGCCATGCGGTGACAGGGGGTGATGCCATCAGCGAAAAATTGTGCCGT
TTGATATTTTATTGCTGCGGTACAGGTACGCGTGTGTTAACAGCTTGCGG
TGCGATGCAATGCGATGCGGTGCGGTACGATGCGATGCGGTGAAAATCGC
GCCGTTTCGATGAGCCCTTTTTTGGCCATCATGATACATTTGTTGGCCGT
TGCAGTATCATGTTGATACGTCAAAGAACCTTTTGAGAAGGAAGAACACC
CAACCTGAAACGAGCAGGGGCTCCGTGGGATGTGTCGAGTCCTTGATAGA
GACGGTTTGGAATAGATATGTCAGCCGGGAAAAAAAATTGATGGGCACTT
GCTGAGTATCGTTGTGTGGTGCGGTGAAGGGGTGATGCGGTGAAACTTGA
GCCGCGTCGGCTGGTTGTATTTTTATGATACGCGTTGGGGTGCGTTACGG
CCAGAGGACGATACGATGCGGTCGAACTTCTCGGTTGATGCCAGACTGCA
GCACCGGTCTGTCACTGTCGCAGACCGCGCTATCCGGCTACAAAGCTGTA
CTTCGTCGGGTGTGTTTGCAAGCCTTTTCGTGGACTAGCTTAGACCACAC
CACCCAATTGGCTGTGCATGTGTGTGCCGGTGTGTGTATGTGTGTGCGTG
TGTTTGTTCGTTCGTTTTTTGCACTTTCTGCACGGTGTGTGCAGGACTCT
TTCCTGCACTGGAAGTTTGCTGTGGCGCCGTGCGCCCTCGTCGGGCTCGT
GGTACACTTGTGGGACTCGTGGGGGTCAAATATCTTCTCCCCCTTAAATG
TGAGAGGCAGCAGCAGTGTTACGACTGTGGCCGGACGGAGTCGTTGATAA
CTGCGATTCGGCAGTTCGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTTTTGTTGTGTTTGTCCATGGACTCGAGTTTCTTAACGTGCGTG
GCATGTTCCGCTGTGCAATAGCCTCGTCGAGGTTGACTTTTTTATTCTCG
ATAGACTTGTGCATGTGGGTTTGTTTTGTGCGTGTGTTCGTTTCTCTCTC
TCTCTCTCTCTCTCACGCACACACTATCACCTGTCACCGGTTGGATCAAC
ACGGGATGCGGAGGTTGTTGGCAGGGATCGAAAATGTTTTATTTATGGAC
AAAAACGACAGACCAACAGCTCCTTTAGCACGAACTAACCAAGCGCTCCG
GGCACGCCGAACCCACCGTAATTTTACCAAAGACTTTCCGCCTCGTGTGT
GAACAATACCGTCAGGCTACGGTGCCATGATGTGGCTGCTGTATTTGTGA
ACGCCCTGTGCCTTGAATCGTTTTCAGAGTACGAAGCTCAACCCATCACC
ACCCATTCCTCATCCCCACCCCCTTTGCGCCTGCCGCTTTATTTATTTAT
TTATTTTTGGCTGGCGCAGTACTTTTGGATATTCTCAGAGGTGCTGGAGC
CCCTCGCAATCGTGCCCCAGCTAATGATGCTGCAGCGATACAGAGAAGTG
GAGAACCTCACAGGTCGGCATTTCTGTCTAATTTTTGTTCAGGCTAGGTG
GCTCGCATACAGCACTCGTAGCGGCGGAACCCCACGCGGCCCCCGTGCGA
CAATTGTAACCACCGCTATTCTCGTAGAGCTTGCTCGCGTCCAGAACCAG
CAGCAGCAAGCAGCCTGTGTACGGTTCACCACCACTGCTATTCGTCTACG
GTAGCTAGCTCAAGACCCCAAATTATCCAGCATTTCGTTTTTGTCGTTGA
GCCACACTTGCTCGGTATCTGTGGTGCAGATGCGACAAGACCAGGCAAAA
CGTTTTTACTGACGCCTTCAGGGCGCCATTGCCGCTTGCGACTCGGAGAA
GTGCCTCCGTTTTTGAGTTTGCGGCCCTCCCTATTTCGGCAGGCAGTACC
ACGTCTTCTTCGCAACAGCGCACCCTCTCCGACTCGAGCCGGTGCCTACA
CTCATGGGTTCCCTTCTATTCCCCGCACGGCATTAGAAATTGTCAAATGT
TTTTCAACAAAGACGCACTAATTTGCACCTATTTCTTTTCTTCTCATTTT
TCCTGGGTTCTCCATTCCATTCCGCCCCTCCTGAAGGGCACTACGTGTTT
CTGTTGGGAACGTACCGGTCGCTGTACATCGTCAACTGGGTATACCGCGC
GTACACCGAGTTTGGGTACAAGCACTACATCTTGGTGTACGTCGCGGGTC
TGGTACAGACCCTTCTTTACGCGGACTTCTTCTACTACTACGCCATCAGG
TACTGCTGCTGTACTGATGAACTACAAGTAGTTTTTTCCTTCTTTTTTTT
TCCTGCAGTATCCGGAGTACAGCAGTACCGGCCCTTAAGGAAGAAACACA
CGAGTAAGAAAATGAGGCTGAGATTTCTGAAAATTTAAGAAATTTGGCGT
AAGAACATTCGCTCAGCGGCCGAATCCTACTCCGAAATATGGTAGCTAAG
AAACGGCGTGCTCTCATGGTGGTCACAAAACAAGAGACCCAGCCTCAGGC
CGATATTCAGTTTCTTACTTACGGGCCGGTACTGTGTCGTCCTCGACACC
AGCGTCTAGTCTAGATGTAGTCCGGATCATATTCAAGATATATGTCACTC
TCAGCGAGGCAGGACCCCCGGTCTTCACGGTGGCTTCATTTTTTTTTTCT
TCGTCTTTCGTTGTCTCATCTTTTTTTTTTTCCCTCTGTGTTTGCCGCAC
GATACAGAGCGTTTCTTCTCATGTGTTTGATTCTGTCGCTTGTCTTTTCT
GTCGGGTCGTTGTCTTCCATGTACTGTATGCTCGGCACACAACGCCGTGC
GTTTTTGCATACTTCGAGTACTTCGTAATGAGTACTTCGTATATCTCCTC
TGACGCTTTCTGTACTCCCGCCCCTGTCTCTGTTGCCGCTGCACATTTTC
GTTCCCTCCTCTCGCCTGTTTCATATTGGGCAAACCAATCCAGCAAATAT
TACGGGGGCCGCATGTCTCTCCCAGCTTAGGAAAGAGTAAAGAAAGCTTG
GCAGAGTGGAAGAAAGGAAGGTTAAAGCTCGACCGGCGACAACGACAGCA
GCATTGGTGTAGTGACAAATGAACACAGGCTTATAACACGAACCAAACCG
CGCCGACGGAGCGGCGCGTTACTCCCGCGGCGATATTTAGAACACCTGTG
GGGCCTGGTAGCAAAATATACGAATTTATCTCTGTCGGACCGGTGACTGA
CGGGGGATCTCAATATAATTCCTTTCGGGAGTATGAACTGTTTTTTTTTT
TCCGCGGGCGGTCGGTGACTCGTTGCCGTGTGCTGTCTGGTGCGTTATAC
TTCGCGCGCGCTGTAGGTCGCGCTTTGTCGGCCGTTGAACTGCTAGGTCT
GTGTTCAGCTAAGCTAGGGCGATAGTTGTTGCCTCTGTTGCTGGTTTTAT
CATGTCGTATATATGTGTGCGTAGAGCTCACACGCAGTTGCTGCCGTTTA
GTTCTTGGTCTGCGTACCGTGAGAACCCCCCCCCTCGTCTCAGGATGCGA
AGGGGAGGATGGAAGTGGTCGGAAAACGTGTTCGTTCTTGATGTCCTACA
GTACGCGTTTTTGAAGCTGCTTGCTGCTGTGCGCCACATTGTTGAAATCC
CGTGCCGCCGAAGGTGATGTCAGCCAGTAAACAACGCCCATGAAGTGTGA
CGAGAACCTTTGGAAGGGAGTAGTACCCCGGCTGGCTGGGTTGGACGTTT
CAAGGAAAAATAAGAAAATAGTTTTTTGGCAAGATCTCGCTGGAGTTCTA
GTTGGTGTAGGCGATAAGCCGTGCTCTCCGAGCCAACCGAGATAAATGCC
TGCTGGGGTGGGCCAAAACAAGCGATTCGTACGTCGTGTCTGTAGTGTCG
TGGCAGGAGTACGTGAAAAAAAGTTTCGGTCCGTCCGGCAGAGGGGGGCA
TTCTGCGCACACGTGCTTGCCACGTGCCAGTCACAGCTGCAGGTGTTGCG
GTTTCTCTCTTGCGTCGAGGCAGAAAGAGGGGAGGGGGGGGCGGCTCCTG
TTGCTTTGTTGATTGATTTGCGGGGTGGCGGTAGTGGCTATGGTGGTTGT
GTTGGTGGATTATTTGTCGTTTATTTGCACTTGGTACCCACGAACCATAC
GCTAATCACAGATTTTGGGCCATCGAAGTGAAAGGTCATACGAAGTTTGT
TGTTGTTGATTCTCACATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGT
CACAAACCAGGCACATATCGTGCTAGGAGGAAAAAAATAAAAATAAAATA
TATGGACTATGATCACCCACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:608654..616224+

>mRNA_P-littoralis_Contig20.150.1 ID=mRNA_P-littoralis_Contig20.150.1|Name=mRNA_P-littoralis_Contig20.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=675bp|location=Sequence derived from alignment at P-littoralis_Contig20:608654..616224+ (Pylaiella littoralis U1_48)
ATGAATATCTTCCGGTTCTTCGGCGACATGTCGCACACGGCCAGCATCCT
GGTCCTGCTGCTGAAGCTGCGAGCTTCCAAGAGTGCCGCAGGCATCTCGC
TGAAAACGCAGGAGCTGTTTCTCGTAATCTTCTTGTCCCGATACTTGGAT
CTTTTCTTCCGGTTCTACTCTTGGTACAACAGCTGCATGAAAGTCCTGTA
CATCTCTCTGACCAGCCTCATCATCTACACGGTTCGAGAGAAGCACCCCA
TCAAGGCCACCTACGACAGGTCGCAGGACTCTTTCCTGCACTGGAAGTTT
GCTGTGGCGCCGTGCGCCCTCGTCGGGCTCGTGGTACACTTGTGGGACTC
GTGGGGGTCAAATATCTTCTCCCCCTTAAATTACTTTTGGATATTCTCAG
AGGTGCTGGAGCCCCTCGCAATCGTGCCCCAGCTAATGATGCTGCAGCGA
TACAGAGAAGTGGAGAACCTCACAGGGCACTACGTGTTTCTGTTGGGAAC
GTACCGGTCGCTGTACATCGTCAACTGGGTATACCGCGCGTACACCGAGT
TTGGGTACAAGCACTACATCTTGGTGTACGTCGCGGGTCTGGTACAGACC
CTTCTTTACGCGGACTTCTTCTACTACTACGCCATCAGCAAATATTACGG
GGGCCGCATGTCTCTCCCAGCTTAG
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