mRNA_P-littoralis_Contig20.12.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE) HSP 1 Score: 1021 bits (2641), Expect = 0.000e+0 Identity = 649/1155 (56.19%), Postives = 745/1155 (64.50%), Query Frame = 1
Query: 3505 SAPSVSGMMTMNARALAACEEGCKDGLGVAFDVQSYLTQCSCPEVR--RRMLGGWVTAGWNSTSVSPAERGY-LRRRLQFETGVPFTVTVPGINSDGLTQSINHFQVNYHEVSARLGVDTEAVEFSALQYSATAFAPITGDSSNTDIQLVVGPPASDPSATAIGMFAVFLVALMLGTCGCMWAMLGLCRQRIKAKKAS-EAYLAAKVAGFT-GSVSGASGSASVDD-EYYNNYNPVRTGGMLAPHGRAIAPASIKAVSPTPSQTEQTELFTNLTEATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEDEAEFWQGLQM-----ATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYRIIREKCSQWHEGNIQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLDKFLAEKKEQRMRVLCLDLEPTGIPQQALRADDDVVRAAHSLRSESSPASTAQMELPFQGADDAPPSSALSPQGLMSMHDQ-LDDQSMSYGESMPTSPGSSMHSSTLLPHTLTADNSNMMRPIRGGVPDSASGSVITSNSSNFSDEQSEVPESPLSRMSAHSY---SLTSPAQIRAPGNDA-HHHDQS----RHVFNSGTTRSS-------------------------RSXXXXXXXXXXXXXXXXXXXNSGS--------------------------------FASSRYNDVYQEDSSVVSDTP--EQVVGGNFYPEQPSGRNLVLPQRREHSRESGAGSGAGGSXXXXXXXXXXXXXXXXXXXXXXXXVSHASPNLGSYRERPSGRGLVQ--SSSEYDDSQMEYADDEGTEASSVS------QQSEGSSAWNDTDAQSVPASHRGGRVGGAQGSYGGARAIPSVAQRFVTDSHTSGDTMDSQETLEEGLRESGSPPLLREVQLYE---DDLSVSE-GSVASSMERSG--SDMTYGQDTAAGSSLRSYALDGGVS--------QGVRGAPASGVP--GHQRQGLGRDFPSESSLASRVQGPASALGSHGMATSNFDSWRNSPGPAGHV---GDIEHTSSGDTANSSALEQQA 6651
+APSVSG++TM A+ CE+GC+ GL AFDVQ YL +CSCPEV RR LGGW+T WNSTSVSP E Y LRRRL + F VTVPG + GL QSIN+FQ NY VS LGVD+E V+FS+LQ+SAT+ +PIT ++SN+D+QLVV PPASD SA A+GMF +FLVAL+LGTCGC+WA+LG CRQR +AK+AS + + ++K+ G T GSVSGASG+ S D+ EYY+N+NP+RTGGMLAPHG+AIAPASIKAVSPTPSQT+QTELFTNL EATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCE+SHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAE+EAEFWQGLQ ATD+LSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVY+IIR KC QWHEGN+QLMGVYLAITFLEYGLNSQTLG DGQSTTLDWVHGLQPDDL+KFLAEKKEQRMRVLCLDLEPTGIPQQALR DD+VV AA+SL+SESSPAS+ QMELPFQGADD PSSA+SPQGLMSMHDQ DDQS+SYG SMP SPGSS+ SS L + + MR RGGV DSASGSVITS+S+ +EQSEVPESPLSRMS HSY S+ S AQ G+ H S R VF SG+T S RS SGS FASS YN+VY + SSV S T E N++ EQPSGRNL+ + + G S P +G+YRE V S S+ D +S+ SSAWNDTDAQS +++SG T+ S G+ P++REV +Y+ + S+S G+ A+S +S S TY DTAAG S S+ GG S GVR P+ P G+Q QG G S SS+ SRV G S +GSH + DSW+NSPGP G G IE SG+T +SS LEQQA
Sbjct: 1380 NAPSVSGVLTMTEAAVEQCEDGCEVGLANAFDVQPYLVRCSCPEVEFTRRSLGGWLTEEWNSTSVSPTEGFYYLRRRLDETSDAGFVVTVPGPTTSGLIQSINYFQNNYGRVSEALGVDSEDVQFSSLQFSATSISPITEEASNSDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRQRRRAKEASRQDFFSSKLMGSTAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQATRSRAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGADGQSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPTGIPQQALRDDDEVVGAANSLQSESSPASSTQMELPFQGADDETPSSAMSPQGLMSMHDQPFDDQSLSYG-SMPGSPGSSLLSSNLYTNRSLGGDREAMRQARGGVRDSASGSVITSSSNYSEEEQSEVPESPLSRMSVHSYGPSSMASSAQAGGRGSGGVRRHGTSPIDARQVFESGSTTSQSESEERHRGMSRGTSQDSEEVGGGFRSGSGSGRRSGVEGGGFRSGSGSGSXXXXXXXXXXXXXXXXXXXXXXXXLDGLASSSFASSHYNEVYGDSSSVESQTQRREDPTVENYFSEQPSGRNLLHVLTHQRGERTPRDEGR---------------------------QSQVGPGIGAYREXXXXXXXVHDPSRSKIDGXXXXXXXXXXXXXXXXXXXXXXXSESDRSSAWNDTDAQSXXX-----XXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQS--------GRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTSTSTYDHDTAAGGSTASFQGGGGDSGRAHRRPGPGVRVPPSPSQPMLGYQ-QGYGS---SRSSIVSRVAGAESEMGSHRLVPPQ-DSWQNSPGPGGGASAEGGIERVLSGETTDSSILEQQA 2488
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Match: D8LG77_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI) HSP 1 Score: 972 bits (2514), Expect = 5.200e-313 Identity = 525/698 (75.21%), Postives = 589/698 (84.38%), Query Frame = 1
Query: 3505 SAPSVSGMMTMNARALAACEEGCKDGLGVAFDVQSYLTQCSCPEVR--RRMLGGWVTAGWNSTSVSPAERGY-LRRRLQFETGVPFTVTVPGINSDGLTQSINHFQVNYHEVSARLGVDTEAVEFSALQYSATAFAPITGDSSNTDIQLVVGPPASDPSATAIGMFAVFLVALMLGTCGCMWAMLGLCRQRIKAKKASEA-YLAAKVAGFT-GSVSGASGSASVDD-EYYNNYNPVRTGGMLAPHGRAIAPASIKAVSPTPSQTEQTELFTNLTEATPPRDDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEDEAEFWQGLQMATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYRIIREKCSQWHEGNIQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLDKFLAEKKEQRMRVLCLDLEPTGIPQQALRADDDVVRAAHSLRSESSPASTAQMELPFQGADDAPPSSALSPQGLMSMHDQ-LDDQSMSYGESMPTSPGSSMHSSTLLPHTLTADNSNMMRPIRGGVPDSASGSVITSNSSNFSDEQSEVPESPLSRMSAHSY---SLTSPAQIRAPGNDA-HHHDQS----RHVFNSGTTRS 5553
+APSVSG +TM+ A+ CE+GC+ GL AFDVQ YL +CSCPEV RR LGGW+T GWNST+VSP E Y LRRRL+ + F VTVPG + GL QSIN+FQ N+ VS LGVD+E V+FS+LQ+SAT+F+PIT ++SN D+QLVV PPASD SA A+GMF +FLVAL+LGTCGC+WA+LG CRQR++AK+AS + ++K+ G GSVSGASG+ S D+ EYY+N+NP+RTGGMLAPHG+AIAPASIKAVSPTPSQT+QTELFTNL EATPPR DPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCE+SHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAE+EAEFWQGLQ ATD+LSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVY+IIR KC QWHEGN+QLMGV LAITFLEYG NSQTLGVD QSTTLDWVHGLQPDDL+KFLAEKK+QRMRVLCLDLEPTGIPQQALR +D+V+RAA+SL+SESSP S+AQMELPFQGADD PSSA+SPQGLMSMHDQ DDQS+SYG SMP SPGSS+ SS L HT N MR RGGV DSASGSVITS+S+ +EQSEVPESPLSRMSAHSY S+ S AQ G+ H S R VF SG+T S
Sbjct: 884 NAPSVSGALTMSLAAMEQCEDGCEVGLANAFDVQPYLVRCSCPEVEISRRSLGGWLTEGWNSTTVSPTEGSYYLRRRLEETSDAGFVVTVPGTTTSGLIQSINYFQNNFDRVSEALGVDSENVQFSSLQFSATSFSPITEEASNNDVQLVVNPPASDASAAAVGMFVLFLVALLLGTCGCLWAILGFCRQRMRAKEASRKDFFSSKMMGSAAGSVSGASGTGSGDEGEYYHNFNPIRTGGMLAPHGKAIAPASIKAVSPTPSQTKQTELFTNLMEATPPRGDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEDSHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEEEAEFWQGLQAATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRGKCPQWHEGNVQLMGVSLAITFLEYGFNSQTLGVDAQSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPTGIPQQALRDNDEVIRAANSLQSESSPTSSAQMELPFQGADDETPSSAMSPQGLMSMHDQPFDDQSLSYG-SMPGSPGSSLLSSNL--HT----NREAMRQARGGVRDSASGSVITSSSNYSEEEQSEVPESPLSRMSAHSYGPSSMASSAQAGGRGSGGVRRHGTSPIDARQVFESGSTTS 1574
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Match: D7G150_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G150_ECTSI) HSP 1 Score: 192 bits (489), Expect = 4.750e-48 Identity = 125/271 (46.13%), Postives = 156/271 (57.56%), Query Frame = 1
Query: 3436 LAPGSTRAPVPXXXXXXXXXXXXSAPSVSGMMTMNARALAACEEGCKDGLGVAFDVQSYLTQCSCPEVRRRMLGGWVTAGWNSTSVSPAERGYLRRRLQFETGVPFTVTVPGINSDGLTQSINHFQVNYHEVSARLGVDTEAVEFSALQYSATAFAPITGDSSNTDIQLVVGPPASDPSATAIGMFAVFLVALMLGTCGCMWAMLGLCRQRIKAKKASEAYLAAKVAGFTGSVSGASGSASVDDEYYNNYNPVRTGGMLAPHGRAIAPASI 4248
+ P +T AP+PXXXXXXXXXX APSVSG + ++ ALA CE GC +GL AFD+Q Y QC CPEVRRR L + N TSV P+E YL RR VP+ VTVPGI + G+ QSINHFQ NY EVS+ LGV + V FS L++ A + + I SN D+ L+V PPAS S AIGMF + ++AL+LGTC C+ A+L C +Y + Y +R GMLAPH RAI PAS+
Sbjct: 249 ITPVTTAAPLPXXXXXXXXXXSAQAPSVSGFIIVSETALAQCEVGCVEGLAAAFDLQPYRVQCICPEVRRRSLRSMLANRRNVTSVHPSEGAYLSRRRLTTAEVPYVVTVPGITTQGMVQSINHFQANYMEVSSSLGVPGDEVVFSTLEFVAASSSHI----SNMDVPLLVNPPASGASTNAIGMFIICILALLLGTCVCLEAVLNFC-----------------------------------GKYCSTYL-IRARGMLAPHHRAIVPASM 479
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Match: A0A0G4EB06_VITBC (Methyltransf_11 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EB06_VITBC) HSP 1 Score: 84.0 bits (206), Expect = 2.190e-12 Identity = 59/236 (25.00%), Postives = 110/236 (46.61%), Query Frame = 1
Query: 4306 TEATPPR--DDPIYTEMIGTLGLFGTFYMSKEDMDFCAMRLYSNFKQAQENMERHAILDSIDVMPEIYDILRHCEESHLTADEKSLLATQLAPHWTNSEEARRALETAVVYTEAEDEAEFWQGLQMATDALSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYRIIREKCSQWHEGNIQLMGVYLAITFLEYGLNSQTLGVDGQSTTLDWVHGLQPDDLDKFLAEKKEQRM 5007
T+ PP +DP Y M+G L + + + RL +F +A E+ + +D++ +P IY +L+ ++ LA+ LAP W N+E + AL + + FW L +D +S D++I A IV F G A +++ + + +++E+C +W + ++QL+ V LAIT + T G++ W+ +LD L ++++ +M
Sbjct: 326 TKRLPPHHTEDP-YEAMMGQL--WTARELEDAERQLVVARLTRDFNRADTESEQESFVDAVKGVPSIYRVLKEMNPVTFPPPLRAKLASLLAPQWKNTEAQQSALRQGLGLEPPSKD--FWLKLGQLSDDVSAEDRLIWLADIVPQFTGEPTHDAYVKQMIDVVPLAIDLVKERCQEWSDADVQLVAVDLAIT------DYMTEPPRGRARFYPWLKNFSRGELDDILRKRRDYKM 550
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Match: D8LG76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG76_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.170e-11 Identity = 82/222 (36.94%), Postives = 107/222 (48.20%), Query Frame = 1
Query: 6025 QSEGSSAWNDTDAQSVPASHRGGRVGGAQGSYGGARAIPSVAQRFVTDSHTSGDTMDSQETLEEGLRESGSPPLLREVQLYEDDLSV----SEGSVASSMERSGSDMTYGQDTAAGSSLRSYALDGGVS-QGVR--GAPASGVPGHQRQGLGRDFP---SESSLASRVQGPASALGSHGMATSNFDSWRNSPGPAGHV---GDIEHTSSGDTANSSALEQQA 6651
+S+ SSAWNDTDAQ +++SG T+ S G+ P++REV +Y+D S S G+ A+S +S TY DTAAG S S+ GG S +G R G+ ASG P ++ LG S SS+ SRV G S +GSH + DSW+NSPGP G G IE SG+T +SS LEQQA
Sbjct: 33 ESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQS--------GRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEVTGTYDHDTAAGGSTTSFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQAYGSSRSSIVSRVAGAESEMGSHRLVPPQ-DSWQNSPGPGGGALAGGGIERVLSGETTDSSILEQQA 245 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.12.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig20.12.3 >prot_P-littoralis_Contig20.12.3 ID=prot_P-littoralis_Contig20.12.3|Name=mRNA_P-littoralis_Contig20.12.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1816bp MQQPQLRLHPNQQRQSPLTRLRLLHRMMQQSQLRLHQNPFRQKPVVLPPTback to top mRNA from alignment at P-littoralis_Contig20:44734..85179- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig20.12.3 ID=mRNA_P-littoralis_Contig20.12.3|Name=mRNA_P-littoralis_Contig20.12.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=40446bp|location=Sequence derived from alignment at P-littoralis_Contig20:44734..85179- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig20:44734..85179- >mRNA_P-littoralis_Contig20.12.3 ID=mRNA_P-littoralis_Contig20.12.3|Name=mRNA_P-littoralis_Contig20.12.3|organism=Pylaiella littoralis U1_48|type=CDS|length=5448bp|location=Sequence derived from alignment at P-littoralis_Contig20:44734..85179- (Pylaiella littoralis U1_48)back to top |