mRNA_P-littoralis_Contig20.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig20.105.1
Unique NamemRNA_P-littoralis_Contig20.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 2.310e-133
Identity = 208/230 (90.43%), Postives = 212/230 (92.17%), Query Frame = 3 
Query:  672 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKAVFF 1361
            GGVLAGGLHAVSGPDHLAALLPRIMGQKWH SMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHN+RLVAMMG+WTEGLVGVSLIAIGLLGLKESLLDYEE PAFEAKSAGSAVVEG              G +AIFFNGVLHGFSWDGAPSLAPALALSSW SVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSV+SSFVAITIGAVWLAKAVFF
Sbjct:    8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETPAFEAKSAGSAVVEGXXXXXXXXXXXXXXGERAIFFNGVLHGFSWDGAPSLAPALALSSWGSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVVSSFVAITIGAVWLAKAVFF 237
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA)

HSP 1 Score: 299 bits (766), Expect = 1.090e-93
Identity = 158/234 (67.52%), Postives = 185/234 (79.06%), Query Frame = 3 
Query:  666 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL--GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKAVFF 1361
            +GGGVLAGGLHA+SGPDHLAALLPRIMG+ W  +MRIGA WGLGHGFSAT+IGLAAFF KDR+  G G   R ++ +GT+TE LVGVSLI IGL+GLKESLLD       +A +A S +    +P      +K G G +AIF NG+LHGFSWDGAPSLAPALA ++W  VLWFLLAYC GTM AMSA TT+IGEGSVRVG+AL+QPDIP++LSV+SS +AI IGAVWL KA FF
Sbjct:    1 MGGGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLAAFFLKDRIQAGGGGGGRWISKLGTYTEVLVGVSLITIGLIGLKESLLDKPHED--DAAAAASEISGEKSP------AKRGGGQRAIFLNGLLHGFSWDGAPSLAPALACTTWHGVLWFLLAYCGGTMAAMSAATTIIGEGSVRVGQALEQPDIPKRLSVVSSGIAIAIGAVWLVKAAFF 226
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A4D9DEM4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.710e-72
Identity = 130/236 (55.08%), Postives = 167/236 (70.76%), Query Frame = 3 
Query:  654 AFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESL-LDYEEAPAFEAKS--AGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKA 1352
            AF+T+ GG+LAG LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL    +  L+  +  +TE L+GVSLI IGLLGLKE+   D       EA+   AGSA           G +K  + GKA+F NG+LHGFSWDG P+LAPALA  SW  V+ FL +Y  GTM++MS  T+LIGEG+V+VG+ALD+P+IP+KL+  SS VAI +G VW  KA
Sbjct:    9 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHNTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSIAGSAAS---------GAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKA 235
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: W7TPT7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT7_9STRA)

HSP 1 Score: 246 bits (628), Expect = 1.530e-71
Identity = 127/233 (54.51%), Postives = 169/233 (72.53%), Query Frame = 3 
Query:  654 AFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKA 1352
            AF+T+ GG+LAG LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA ++G+ AFF K RL    +  L+  +  +TE L+GVSLI IGLLGLKE+   ++ +     ++ GS    GA+     G +K  + GKA+F NG+LHGFSWDG P+LAPALA  SW  V+ FL +Y  GTM++MS  T+LIGEG+V+VG+ALD+P+IP+KL+  SS VAI +G VW  KA
Sbjct:  133 AFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAA-HFDVSAVMPLEAEGSITGSGAS-----GAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKA 359
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A7S2Y0T2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0T2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.820e-67
Identity = 129/247 (52.23%), Postives = 170/247 (68.83%), Query Frame = 3 
Query:  618 RRLAFAALANAAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESL-LDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKAV 1355
            R LA  A+A+AA+ A+VGGGVL+G LHA+SGPDHLAA++PR +G++W  SM++GA WGLGHG S  ++GL AF  KD+L L +   +++ + TWTE LVG+SLI IG LG+KES   D ++A A E     S    G+               K+IFFNG+LHG SWDG PSLAPALA ++W  V+ FL AYC G +V+MS  T+LIGEGSVRVG+  D P IP++LS+ SS +AI IG +W  K +
Sbjct:   77 RPLATVAMASAASLASVGGGVLSGSLHAISGPDHLAAVVPRCIGKRWWISMQVGALWGLGHGVSGLMMGLFAFLVKDKLNL-NKSPMISNLSTWTEILVGLSLILIGFLGVKESRSFDSDKAAAKEKLEQESGKKTGSF--------------KSIFFNGLLHGLSWDGTPSLAPALAFTTWRPVVGFLSAYCWGVVVSMSMCTSLIGEGSVRVGR--DNPKIPQQLSMFSSGLAIVIGLLWTGKGI 306
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A0G4EAE2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAE2_VITBC)

HSP 1 Score: 220 bits (560), Expect = 1.030e-60
Identity = 124/243 (51.03%), Postives = 160/243 (65.84%), Query Frame = 3 
Query:  648 AAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL------GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLL-DYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKAV 1355
            AA+  TVGGG LAG LHAVSGPDHLAALLP+ +G++W  + ++G  WGLGHG SA ++G+ AF  KDR+      GL H   L+  M TWTEGLVG+SLI IG  G KE+   D EE  A     A     EG        +S S   G  +FFNG+LHGFS DGAP LAP+L+ + W +V  FLL+YC+GTM+ MSA +   GEGS+R+ +A+D+PDIP++L+  +S  A  IG VW AKA+
Sbjct:  207 AASIVTVGGGALAGSLHAVSGPDHLAALLPQCLGRRWTGAGKLGLVWGLGHGLSAMIMGMLAFVLKDRIFVMDAAGL-HGGALIERMETWTEGLVGLSLILIGFFGYKEARSWDAEELQAQLDARAKEEQKEGYRD-----LSASLRRGLTLFFNGMLHGFSLDGAPGLAPSLSFTRWPAVFLFLLSYCTGTMLTMSACSAAAGEGSIRLTRAVDRPDIPKRLAFGASAFAAGIGIVWFAKAI 443
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A7S4J5D2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J5D2_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.190e-60
Identity = 115/230 (50.00%), Postives = 154/230 (66.96%), Query Frame = 3 
Query:  666 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKA 1352
            + GGV AGGLHA++GPDHLAALLPR  GQ+W+ + RIGA WG+GHG SAT++G+ AF  K+R+  +G    +V     + E  VG SL+ IGLLG+KE+     E      +S  +A  E         V++     +A+ FNGVLHGFSWDGAPSLAPA+A+++W   + FLLAY  GTM AM+ TTTLIGEG+ + G+ L +PDIP+KLS +SS +AI +G  W + A
Sbjct:   85 ISGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKNRMSKMGAFSNIVHGASAFMEVAVGASLVFIGLLGIKEAREWEAEIEGGSPQSLSAAAGEDGVK-----VAQK----RAVVFNGVLHGFSWDGAPSLAPAVAVATWRGNITFLLAYALGTMAAMTITTTLIGEGTRKAGEVLHRPDIPQKLSFVSSIIAIGVGLFWCSLA 305
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A1Z5K7J2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7J2_FISSO)

HSP 1 Score: 214 bits (544), Expect = 3.240e-60
Identity = 115/232 (49.57%), Postives = 161/232 (69.40%), Query Frame = 3 
Query:  672 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRL-GLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEE---APAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKAV 1355
            GG+ AGGLHA++GPDHLAALLPR  GQ+W+ ++R+GA WG+GHG SATV+GL AF  K  +  +   ++++A     TE  VG+SLI IG++G++E+  ++E+        ++S  +AVV+          SK  +  +A+ FNG+LHGFSWDGAPSLAPA+A+++W   L FL AY  GTM  M+  TTLIGEG+ + G+ LD+PDIP+KLS +SS +A+ IGAVW   AV
Sbjct:   72 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGLTAFGLKSTVQNMKGMQKVLAGASHVTEIAVGLSLIVIGVMGIREAR-EWEQDLTTTMGASQSLSAAVVDEVA-------SKHSTQKRAVLFNGILHGFSWDGAPSLAPAVAVATWGGSLAFLSAYAIGTMTTMALATTLIGEGTRKAGQVLDRPDIPQKLSFVSSILAMVIGAVWCYLAV 295
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A7R9ZBQ6_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBQ6_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.910e-60
Identity = 119/239 (49.79%), Postives = 157/239 (65.69%), Query Frame = 3 
Query:  666 VGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLG-LGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGG---------KAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKA 1352
            V GGV AGGLHA++GPDHLAALLPR  GQ+W+ + RIGA WG+GHG SAT++G+ AF  K R+  +G   R+V    ++ E  VG SL+ IGLLG+KE+  ++E            A +EG  P      S S + G         +A+ FNGVLHGFSWDGAPSLAPA+A+++W   + FLLAY  GTM AM+  TTLIGEG+ + G+ L +PDIP+KLS +SS +AI +G  W + A
Sbjct:   88 VSGGVFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRIGALWGMGHGVSATILGVCAFALKSRMSKMGAFSRVVRGASSFMEIAVGASLVFIGLLGIKEAR-EWE------------AEIEGGVP-----QSLSAAAGEDGMKVAQKRAVVFNGVLHGFSWDGAPSLAPAIAVATWRGNITFLLAYALGTMGAMTIATTLIGEGTRKAGEVLHRPDIPQKLSYVSSIIAIGVGLFWCSLA 308
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BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Match: A0A1E7FPG4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPG4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.900e-59
Identity = 118/244 (48.36%), Postives = 158/244 (64.75%), Query Frame = 3 
Query:  624 LAFAALANAAAFATVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATVIGLAAFFFKDRLGLGHNERLVAMMGT-WTEGLVGVSLIAIGLLGLKESLLDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFSWDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGKALDQPDIPRKLSVISSFVAITIGAVWLAKA 1352
            L+ A  A AA    + GG+L G LHA++GPDHLAALLPR  GQ+W+N+ RIG  WGLGHG S T++G+  +  K +L      +++      + E  VG+SLI IG++GLKE+    EE       S  SAV    TP  G    K+ +G +A+ FNG+LHGFSWDGAPSLAPALA++SW   L FL AY +GT+  M+  T+LIGEG+ R G+  ++PD+P+KLS  +S +AITIG VW   A
Sbjct:   73 LSVATPAVAAVTGVITGGILGGALHAIAGPDHLAALLPRCCGQRWYNAGRIGILWGLGHGTSVTILGILGYALKSQLTKASGAKVILTGAAHFMEVAVGLSLIIIGIMGLKEAREWGEEMEELPTYSLSSAV----TPSEG----KANNGNRAVIFNGLLHGFSWDGAPSLAPALAVASWGGNLAFLSAYAAGTIGVMAIATSLIGEGTRRAGEVFNRPDLPQKLSFFTSLLAITIGVVWCGLA 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig20.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJP2_ECTSI2.310e-13390.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVB1_9STRA1.090e-9367.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DEM4_9STRA1.710e-7255.08Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPT7_9STRA1.530e-7154.51Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S2Y0T2_9STRA3.820e-6752.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4EAE2_VITBC1.030e-6051.03Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S4J5D2_9STRA1.190e-6050.00Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A1Z5K7J2_FISSO3.240e-6049.57Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9ZBQ6_9STRA4.910e-6049.79Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A1E7FPG4_9STRA1.900e-5948.36Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig20contigP-littoralis_Contig20:383180..388657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJP2
Preferred nameNIK1
PFAMsDsbD_2
Model size2136
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue3.26e-138
EggNOG OGs28N5Y@1|root,2QUR7@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_002800.1
Cds size1152
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig20.105.1prot_P-littoralis_Contig20.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig20 383809..387885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789975.5947266-UTR-P-littoralis_Contig20:383179..3833441680789975.5947266-UTR-P-littoralis_Contig20:383179..383344Pylaiella littoralis U1_48UTRP-littoralis_Contig20 383180..383344 +
1680789975.6044807-UTR-P-littoralis_Contig20:383761..3838081680789975.6044807-UTR-P-littoralis_Contig20:383761..383808Pylaiella littoralis U1_48UTRP-littoralis_Contig20 383762..383808 +
1680789975.6603682-UTR-P-littoralis_Contig20:387885..3886571680789975.6603682-UTR-P-littoralis_Contig20:387885..388657Pylaiella littoralis U1_48UTRP-littoralis_Contig20 387886..388657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789975.6179326-CDS-P-littoralis_Contig20:383808..3842681680789975.6179326-CDS-P-littoralis_Contig20:383808..384268Pylaiella littoralis U1_48CDSP-littoralis_Contig20 383809..384268 +
1680789975.6296537-CDS-P-littoralis_Contig20:385402..3855601680789975.6296537-CDS-P-littoralis_Contig20:385402..385560Pylaiella littoralis U1_48CDSP-littoralis_Contig20 385403..385560 +
1680789975.6397629-CDS-P-littoralis_Contig20:386241..3866161680789975.6397629-CDS-P-littoralis_Contig20:386241..386616Pylaiella littoralis U1_48CDSP-littoralis_Contig20 386242..386616 +
1680789975.6495163-CDS-P-littoralis_Contig20:387726..3878851680789975.6495163-CDS-P-littoralis_Contig20:387726..387885Pylaiella littoralis U1_48CDSP-littoralis_Contig20 387727..387885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig20.105.1

>prot_P-littoralis_Contig20.105.1 ID=prot_P-littoralis_Contig20.105.1|Name=mRNA_P-littoralis_Contig20.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=384bp
MVVAVARTLVALALATTARGFVAPAAMTACAPAAPPRSGSASRTSCSQPQ
HRHQQRFAVAPQHQQPASASSFIGSAGSLNHLRPRRRLGAAGAGAAAGAG
AAAGAGAGACHTSTVATAAAATTTMGLGVFAPGGGRRLAFAALANAAAFA
TVGGGVLAGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSA
TVIGLAAFFFKDRLGLGHNERLVAMMGTWTEGLVGVSLIAIGLLGLKESL
LDYEEAPAFEAKSAGSAVVEGATPGAGGGVSKSGSGGKAIFFNGVLHGFS
WDGAPSLAPALALSSWSSVLWFLLAYCSGTMVAMSATTTLIGEGSVRVGK
ALDQPDIPRKLSVISSFVAITIGAVWLAKAVFF*
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mRNA from alignment at P-littoralis_Contig20:383180..388657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig20.105.1 ID=mRNA_P-littoralis_Contig20.105.1|Name=mRNA_P-littoralis_Contig20.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5478bp|location=Sequence derived from alignment at P-littoralis_Contig20:383180..388657+ (Pylaiella littoralis U1_48)
CCTACAACAATTGAACAGCTTATTGTTTGAGGAAGCACATACCTAGCCAG
GCAGGGGCAGAAGAAAGGAACAGGAGGTGCCAGGAGGTGCTGGTACTGCT
GTACTGCTGTTGATATTGTCGACGCAGTGGTGTGTTCGATTTGCTGACAC
GTGGCCGAACGACAGGTGTGTGTTTGTGGACCGAAGGCTTTGCCTTCCTC
TGTCACATGCATCGCATGTCAACAACTTTCACGATAACTTGTATTGTAGA
GCAGCCGGTGCTTGGCGCACCACACCCACGCTGCTGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAAGACGTGATACAAATACAG
GTCGGCTTTCTTGTAGGGTACACAGCTGTTGGGCGCACACTTGCAGCAGG
CACTTTGCTGCTTGCTGCTGCATCTTTGATTTGCTCATGTGGACCCTGCG
TTTTTTCGGCCCCGCTCTTTATCCTTCAAACGATCATGCGACATGATGAA
CCTGCCGTCGTCACCGCACCCTTAATCTGTCTGGCTACATCTATTGGCTT
CTGCTTGGGTCGATGTTGCACCCGACACGCAGGCGGTGCGTAGTAGCAAT
AGCAGCAGCAGCAGCGGGAACAGGAAAGGATGGTGGTCGCCGTAGCGAGG
ACGCTCGTGGCGCTAGCGCTTGCGACAACCGCGCGAGGCTTCGTGGCACC
CGCAGCAATGACAGCATGCGCTCCTGCTGCTCCTCCCCGTTCAGGCTCCG
CTTCAAGGACGTCTTGCTCCCAGCCGCAGCACCGGCACCAGCAGCGTTTC
GCCGTCGCACCGCAACATCAACAACCGGCATCAGCCTCGTCGTTCATTGG
TTCCGCGGGGTCCTTGAACCACCTTCGTCCCCGGCGACGATTAGGAGCAG
CGGGAGCAGGAGCCGCAGCGGGAGCAGGAGCCGCAGCAGGAGCAGGAGCT
GGAGCATGCCACACCTCGACGGTTGCGACTGCTGCTGCTGCTACGACCAC
CATGGGGTTGGGGGTTTTTGCGCCGGGGGGCGGGAGGCGGCTGGCTTTTG
CGGCCTTGGCGAACGCCGCTGCCTTTGCGACGGTGGGAGGTACGTCACAG
GTTGCAGTTGCAGTTTTGGTGTGTCCAGCGTAGTCCCACCCCCCGCTCCA
TAACCCAACCAGGATGATCAATGGTCGACATGTCTGTACGTATCATCCAA
CATTACTCAAAACTTGCATCACGCCACACCTTGTCGTACGACAGCACTCA
TACTCGTACTTGAACTCAATTTGTACGATGTCACGGCAGCAGTAATCGTC
GATGTGCCATGATACGAGCATTTTGTTATTATACGCTACTTCGCACTTCT
TTTTGTTGCATCACCGCCGTCGGATGTGTACAATCGAGTGCGTGCGGGTG
TGTGTGTGGATGTTGGTTTGTGGGTGTGATAGGCTTGATAGCATACCTAA
CATGCGGTGGAAATCAAGAAACCTGGCTACCAGCTGTATTTGATCAACGA
AGCATGCGTTCAAAACATCGTAATGACTTATACTGCTGTACCAGGTATGT
GACATTCAGCGGCACAAACACAAATACACACACAAACACACAGTGATGTC
TGGGTCGATCTCTTGGCATGACCAAAAGAGCGACTAATGGCGTATCGCAT
ACGAAGTACTCGAAGTACCAGAGAAATGATACTCGAAGTACGAAGGATGA
CACGAAACGCCGAACTACAAAACCCGGCCTTCTTGTACCCGTATGACACG
GACGACCTCGGCGAGTCGAGTACGTATGTAGTCGGAGTGCGCTTTGCGTC
CACTGCAATATTTGTTTGGAATCTTCGCCCAAGCAAAGAGAGGGTGAATA
CGATCACGTACCGGCACTACCGTCGTGGTACATGCGAGGAAAAATAGTTA
GTAACAAGCTCACCGCACAGCAGTTATCCCTGTGGACGTTCCATTTAGAC
TATATAGACTCGAGCCTTTTTTTTTTCGCGGCGGCATCGCGGGGGGGGAG
GGGGGGTTGGGCTGGTGTACCCTATTTAGAGCGTGTTTACTAGATGAACA
GCCAGAAGCGTTACCTTTGGACCTGACCTTCGATTTGCCCCTCAACTGCT
ACTGCTGTATTGTGGCTGACTGACTACGGTATGTAAACGCCACCATTTCG
TATGGCACGGCGTTGGCGTTAATGCATGCCAACCGGCTCAACACCGAAAT
GGTTGCAATTTTGTTTACGACAGGAGGTGTTCTAGCCGGGGGACTGCACG
CGGTTTCCGGGCCCGACCACCTGGCCGCACTGCTCCCGCGCATCATGGGG
CAGAAGTGGCACAACTCCATGAGAATCGGGGCCACCTGGGGGCTTGGCCA
CGGCTTCAGCGCGACGGTCATCGGGTTGGCGGTAAGGATTGATTTTTTGT
TTTGCCTTGTTGTCGTGACGGGCAATCACCTTCGTGTGCTGTGATGTTCA
TGCGATTATTTGCAAGAGAGTCAGAGGTGTTGGCGTGATGAGCTGGTGTG
CTGCTTTCGCTTTTGTGTACTCCGTATATGACAGCCTCTCTCCAGGAGCT
TCAAGTCGCGCAGTGGTGGTTTTTGTATCGGATACCCCTTCGGCGTGCTC
CACGGTTTTCGTGGTCACTGGCAACGCACCAGGCCACGTTATGGGTATCT
CCCATCCCATCACCATCATCACCACGATCATCAATACAAGCGTTGCCCTC
CCCGTCATAATATTTTTTCTGAAGGACAGGCCTGGCGCTAGGGCATAGTA
GCCCTGCAATACAGCGACTCTCGCAACCTGTGTTTACATGATTGCACACA
CCACCATTTTTGAACAGCCCCCATCGCTCCTCTCCACAGCCTTTCAATTC
CATCCCCCCTGCCACCGTTACCACCACCGTTACAACCACCATCGAGAATC
GGGCCTGGCCACTGCTGCTGCCACAGCCATCCCCACCACCACCATTGGGC
ATCGAACCCCCGTACACCCGGCCATTGCTACTGCCACAGCCACCATCACC
ACTTCAACCTCTACAACCACTTCAACAAGCATTAATGTGCCTCCCCCCCC
CTTACTCCCCAGGCGTTTTTCTTCAAGGATCGGCTCGGGCTCGGGCACAA
CGAGCGGCTCGTGGCCATGATGGGCACCTGGACGGAAGGACTCGTGGGCG
TTTCCCTCATCGCCATCGGGCTCCTGGGCCTCAAGGAGTCCCTGTTGGAC
TACGAGGAAGCCCCCGCTTTCGAGGCCAAGAGCGCCGGTAGCGCGGTGGT
TGAAGGGGCGACGCCGGGAGCGGGGGGGGGGGTGTCCAAGAGCGGCAGCG
GGGGGAAGGCTATCTTTTTCAACGGGGTTCTGCACGGGTTTTCGTGGGAC
GGGGCGCCGAGCCTGGCTCCGGCTCTCGCGCTGTCGTCGTGGAGCAGCGT
GCTGTGGTTTCTGCTGGCGTATTGCTCGGGGACCATGGTGAGTTTCCGTT
CCTTCTCCCGTGGAATTTTATATTTATTTATTCTACAAACATCCGCCAGC
CAACAGTCGGACAACCTCGGAGACCATGATGAGTTTTCGTTCCTTGTTCC
ATGGAATATTTTTAATTTATTTTACCAACGTCCGCCATCCAAAAGTCGAA
CAACAATCAAAGACAGAAAGTTCCCGCTGGCAAGCTCGAAGTGCGAGTTT
TTCCTTCCCCACCCGAAATGATGTACAACACTGGCCGAAATCATTGACAA
ACACGTCCATCTACGCCCCCCACCCGCCGGGCTTGTTTCGAGTTTCCAAC
ACTGTACGTTTTAGGGTACTGGTTTGGACACGCTCTTCATCTCTTTACCG
AGAGTTTTACCCTTGGCGATATAAAGAAGTTTTCACTCTGGACGCAAGCA
TGGCCGAGAAATGCTAGAAGCTCGGCCCGATTATTGCCGACACCAATGTT
TAAAGAGTCTAGATCTTGAATGTCTCACACAGAATAGAGGGTTGATGAAA
GAAAGGCAGAGACAAATACAGAGTCCCCGCCGTCCTCCGACAACGAAGGA
CGTTTGGCTATTGGGAGGGATCCAACTAGGGCAGCAACGGTGCTCCATCC
AAAGGAGGCGTGCAGTCATCGACCAAATACAAAGTACAGCAGTAGCCCAA
AGGAACATTCATAGGGAGTAGCTACTATTAGTCCCCACGCCTCTTGACAG
CTTTTACTCTATCTTCGAGGAGCATGCACTGCTGTCAACGGCGAAGCAAT
TCTTCTCGGTAAAGTGACGGCCAGTGCAGGAAAACTCACACCCACAAAGC
GAACAGCAAACTCGCTAGATCGAGGGAAGACTAGGCAGGTTGAGTAGGGC
TGTCACACAGCACAAATACAAAGGAAGCACTTATTACGGTTACGATGGGT
GCTTCGTCTTTCACTGGGGGGTCCAACACGGTCTACCATAGACTGTCAAC
AAGGCAAGCAGCAGAAAACGACAGTGCTGCCCCCCCCCCCCCCAAGCAAC
AGAAAACGAGAACGCCCCCCCCGCTCCATTTGACCCCTGTTGCCTCTCCT
GGAAATCTCGCGGGTGCCCCCTGCCATTGTTGTCTGTTTGAATGCAGGTG
GCCATGTCGGCGACCACAACCTTGATCGGGGAGGGAAGCGTAAGAGTGGG
GAAGGCGTTGGACCAGCCGGACATTCCTAGGAAGCTGTCCGTCATTTCTT
CGTTCGTGGCCATAACCATCGGTGCCGTGTGGCTTGCAAAGGCGGTGTTT
TTTTAAACGTGGACGCATCCAACCGTTCTCTTCACTGCTGCAGACTAGCT
GCTCCAGACTGCCCGTTTTAGGTCTACAACCTACTACGCGGATTTAGTCC
CGGCGGAAAAACGAATCTTAGTACCGGTTTGATATGTTGGTTGGCAGGCG
CGATGGATAACCCCTTTTGAATGACGAACTTTGTTTTTATGCTCGTGTTC
GAGCGACGGGAAGCCAATGCAACAATTTCGAAAACCAAGGGTCGATCCTC
CTGCACCCACAAAATTCTCATTTTGGAAAGAAATGTGGAGGGAAGCTGTG
TTGGCTTGGCGAAGGTATGATATTGGTGTTTTTGAACGAAGTTTTGGTGC
TGTTTCACCGGTGTTTGGCAGGGCAAAGGAGGGGTGCTATTTCGAGGAAC
CCATTTGGGTACTGGTTTTCATTAGTGGTCGGCAAAGGCACAGCAGTAGC
GCTTTTTCGAAGGACCCATCCATGGGGATGCTGGTTTCGAGTGCGGTTGG
CTGGCACAGACGGTTTGGCTTCCCTGATGTTTGCAGAAAGCACCACTGGC
GCCAACCGACAAGCTTTGGTTTTCCTGATGCTGTTCCCATTGTGTCGATG
TGACGAAAGTCACTCCTACGATGTCAAAATTTTGAATATTTTTTTGCTGG
TGGTTGTGCGTATATGACATTGAAAAAAAGCGGCCAAACATTATTTTATT
TTTTATTTGTCTTGATACCAATGTTCCTGTACAGCATTGCATGGGTTCGT
CAAATTGTCTTAAAAATGTGAAATGGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig20:383180..388657+

>mRNA_P-littoralis_Contig20.105.1 ID=mRNA_P-littoralis_Contig20.105.1|Name=mRNA_P-littoralis_Contig20.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1152bp|location=Sequence derived from alignment at P-littoralis_Contig20:383180..388657+ (Pylaiella littoralis U1_48)
ATGGTGGTCGCCGTAGCGAGGACGCTCGTGGCGCTAGCGCTTGCGACAAC
CGCGCGAGGCTTCGTGGCACCCGCAGCAATGACAGCATGCGCTCCTGCTG
CTCCTCCCCGTTCAGGCTCCGCTTCAAGGACGTCTTGCTCCCAGCCGCAG
CACCGGCACCAGCAGCGTTTCGCCGTCGCACCGCAACATCAACAACCGGC
ATCAGCCTCGTCGTTCATTGGTTCCGCGGGGTCCTTGAACCACCTTCGTC
CCCGGCGACGATTAGGAGCAGCGGGAGCAGGAGCCGCAGCGGGAGCAGGA
GCCGCAGCAGGAGCAGGAGCTGGAGCATGCCACACCTCGACGGTTGCGAC
TGCTGCTGCTGCTACGACCACCATGGGGTTGGGGGTTTTTGCGCCGGGGG
GCGGGAGGCGGCTGGCTTTTGCGGCCTTGGCGAACGCCGCTGCCTTTGCG
ACGGTGGGAGGAGGTGTTCTAGCCGGGGGACTGCACGCGGTTTCCGGGCC
CGACCACCTGGCCGCACTGCTCCCGCGCATCATGGGGCAGAAGTGGCACA
ACTCCATGAGAATCGGGGCCACCTGGGGGCTTGGCCACGGCTTCAGCGCG
ACGGTCATCGGGTTGGCGGCGTTTTTCTTCAAGGATCGGCTCGGGCTCGG
GCACAACGAGCGGCTCGTGGCCATGATGGGCACCTGGACGGAAGGACTCG
TGGGCGTTTCCCTCATCGCCATCGGGCTCCTGGGCCTCAAGGAGTCCCTG
TTGGACTACGAGGAAGCCCCCGCTTTCGAGGCCAAGAGCGCCGGTAGCGC
GGTGGTTGAAGGGGCGACGCCGGGAGCGGGGGGGGGGGTGTCCAAGAGCG
GCAGCGGGGGGAAGGCTATCTTTTTCAACGGGGTTCTGCACGGGTTTTCG
TGGGACGGGGCGCCGAGCCTGGCTCCGGCTCTCGCGCTGTCGTCGTGGAG
CAGCGTGCTGTGGTTTCTGCTGGCGTATTGCTCGGGGACCATGGTGGCCA
TGTCGGCGACCACAACCTTGATCGGGGAGGGAAGCGTAAGAGTGGGGAAG
GCGTTGGACCAGCCGGACATTCCTAGGAAGCTGTCCGTCATTTCTTCGTT
CGTGGCCATAACCATCGGTGCCGTGTGGCTTGCAAAGGCGGTGTTTTTTT
AA
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