mRNA_P-littoralis_Contig2.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig2.109.1
Unique NamemRNA_P-littoralis_Contig2.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig2.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig2contigP-littoralis_Contig2:517194..518753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1560
Hectar predicted targeting categoryother localisation
Exons1
Cds size1089
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789953.649964-UTR-P-littoralis_Contig2:517193..5175321680789953.649964-UTR-P-littoralis_Contig2:517193..517532Pylaiella littoralis U1_48UTRP-littoralis_Contig2 517194..517532 -
1680789953.6766014-UTR-P-littoralis_Contig2:518621..5187531680789953.6766014-UTR-P-littoralis_Contig2:518621..518753Pylaiella littoralis U1_48UTRP-littoralis_Contig2 518622..518753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789953.66613-CDS-P-littoralis_Contig2:517532..5186211680789953.66613-CDS-P-littoralis_Contig2:517532..518621Pylaiella littoralis U1_48CDSP-littoralis_Contig2 517533..518621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig2.109.1prot_P-littoralis_Contig2.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig2 517533..518621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig2.109.1

>prot_P-littoralis_Contig2.109.1 ID=prot_P-littoralis_Contig2.109.1|Name=mRNA_P-littoralis_Contig2.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp
MQPPSPGPVWRDSDESLEELRDSFRRPGPRKAPPKEGTPDDRFSSTETIL
KARQKPDKADFSRSRSPSPLSSILRRKRAQCFAKLSGGTNKRNSKPKPSP
AVPGKREGTTSNSATTGVSRRKQRMTGKAVWKDSATAATRKVLFDPARFL
ELVSDVEAAPSKNSGLASRKRNKHGVSGRAQIGVLEAAPLAPPPPQDNSP
ETNQHWRHITHPLRAWKKNGQGARGVTSTYREISGLNAVKESPGAYFGLT
RSRSSHNNRNSEFLPAALSPPAASFPESIADGTSSPLPRVFTARGTQPPG
KNARAGQRRRRQRFSASRYLRYNGFHVGSRTPPRAPAFEPRGGPTSDHRT
APNTEDQVSSHR*
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mRNA from alignment at P-littoralis_Contig2:517194..518753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig2.109.1 ID=mRNA_P-littoralis_Contig2.109.1|Name=mRNA_P-littoralis_Contig2.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig2:517194..518753- (Pylaiella littoralis U1_48)
AGGTTCGATGTTCTCTTTGCAGGAAAAAAAACAGTTCGTCCAAATTCCGC
AGGAAATTGTGGGCAAAGCTTTCCTCCTGATCAAGGTGCTCTTGATCTCA
AAGACGTGCCGGTCTGGCGGGATGGGCTTGACATGCAGCCACCATCACCC
GGGCCAGTTTGGCGCGACTCCGATGAATCACTAGAAGAACTGAGAGATTC
ATTTAGAAGACCTGGTCCGAGGAAGGCCCCTCCCAAGGAGGGAACTCCCG
ATGATCGCTTCTCGTCGACGGAAACTATTCTGAAAGCGCGTCAGAAGCCG
GACAAGGCTGATTTTAGCAGGTCGCGCAGTCCGTCTCCTTTGAGCTCTAT
ACTGAGACGAAAACGCGCCCAGTGCTTCGCGAAGTTGTCTGGTGGCACTA
ACAAACGCAACAGCAAGCCGAAACCTTCGCCGGCAGTTCCTGGTAAGAGA
GAAGGTACGACCAGCAACTCAGCAACAACAGGTGTTTCAAGGCGCAAACA
GCGGATGACTGGAAAGGCGGTGTGGAAAGACTCGGCGACGGCGGCGACGC
GGAAAGTTTTATTTGACCCAGCAAGGTTCTTAGAGCTAGTATCGGATGTC
GAGGCGGCACCAAGCAAGAATAGCGGCCTGGCGTCGCGAAAGAGGAATAA
ACATGGGGTATCCGGCCGTGCCCAAATCGGGGTGCTCGAAGCGGCACCCC
TCGCCCCACCTCCTCCGCAAGACAACAGCCCAGAGACGAACCAGCATTGG
CGGCATATCACCCACCCGCTGCGAGCGTGGAAGAAGAACGGGCAAGGAGC
GCGAGGGGTGACATCAACGTATAGGGAAATCTCGGGGCTAAATGCCGTCA
AAGAGAGCCCGGGAGCGTATTTTGGGCTAACCCGAAGCCGCAGCAGCCAC
AACAACAGAAACAGTGAATTTTTGCCAGCAGCGCTATCACCACCCGCGGC
CTCGTTCCCGGAATCGATCGCGGACGGCACCTCATCACCACTCCCTCGGG
TTTTTACTGCACGAGGCACACAGCCGCCTGGTAAAAACGCTAGGGCTGGA
CAACGACGGAGACGGCAACGGTTCTCGGCCAGCCGATATCTAAGATATAA
CGGTTTCCATGTTGGCTCGCGGACACCGCCGAGAGCGCCGGCATTCGAGC
CGCGAGGGGGGCCAACTTCCGATCATCGAACAGCCCCAAACACCGAAGAT
CAAGTCAGCAGTCACCGGTAACCGACGAGGATGACAGGAAATTTTGATAG
ACGAGGTTGATGATACCGGTGCCTCGGTATCGCGATCAGTTTCAACATAA
TCGTATAGCTGTCGTGAAAGCGGAAAAGAGGCGTCTGGCTGAGCTGAGAG
TTTGGGTAAGGATGGTCAGTGTTCGCATCACCGAGATCAAGCCGGGACGT
GAAGCAGGGGGCGCCCCCAAGAAGATGGGGAGAGAGATTCATGATTTTGC
TTGGCGGGACTGAAGCGAGAGTTTCGCAAGTAGTTGGAGGGGAGCAAGAA
AATGGTTACGGTATCGTCCTGAGGAAATATGGGTTCATGGGCGCGTGGAC
GAACCTCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig2:517194..518753-

>mRNA_P-littoralis_Contig2.109.1 ID=mRNA_P-littoralis_Contig2.109.1|Name=mRNA_P-littoralis_Contig2.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig2:517194..518753- (Pylaiella littoralis U1_48)
ATGCAGCCACCATCACCCGGGCCAGTTTGGCGCGACTCCGATGAATCACT
AGAAGAACTGAGAGATTCATTTAGAAGACCTGGTCCGAGGAAGGCCCCTC
CCAAGGAGGGAACTCCCGATGATCGCTTCTCGTCGACGGAAACTATTCTG
AAAGCGCGTCAGAAGCCGGACAAGGCTGATTTTAGCAGGTCGCGCAGTCC
GTCTCCTTTGAGCTCTATACTGAGACGAAAACGCGCCCAGTGCTTCGCGA
AGTTGTCTGGTGGCACTAACAAACGCAACAGCAAGCCGAAACCTTCGCCG
GCAGTTCCTGGTAAGAGAGAAGGTACGACCAGCAACTCAGCAACAACAGG
TGTTTCAAGGCGCAAACAGCGGATGACTGGAAAGGCGGTGTGGAAAGACT
CGGCGACGGCGGCGACGCGGAAAGTTTTATTTGACCCAGCAAGGTTCTTA
GAGCTAGTATCGGATGTCGAGGCGGCACCAAGCAAGAATAGCGGCCTGGC
GTCGCGAAAGAGGAATAAACATGGGGTATCCGGCCGTGCCCAAATCGGGG
TGCTCGAAGCGGCACCCCTCGCCCCACCTCCTCCGCAAGACAACAGCCCA
GAGACGAACCAGCATTGGCGGCATATCACCCACCCGCTGCGAGCGTGGAA
GAAGAACGGGCAAGGAGCGCGAGGGGTGACATCAACGTATAGGGAAATCT
CGGGGCTAAATGCCGTCAAAGAGAGCCCGGGAGCGTATTTTGGGCTAACC
CGAAGCCGCAGCAGCCACAACAACAGAAACAGTGAATTTTTGCCAGCAGC
GCTATCACCACCCGCGGCCTCGTTCCCGGAATCGATCGCGGACGGCACCT
CATCACCACTCCCTCGGGTTTTTACTGCACGAGGCACACAGCCGCCTGGT
AAAAACGCTAGGGCTGGACAACGACGGAGACGGCAACGGTTCTCGGCCAG
CCGATATCTAAGATATAACGGTTTCCATGTTGGCTCGCGGACACCGCCGA
GAGCGCCGGCATTCGAGCCGCGAGGGGGGCCAACTTCCGATCATCGAACA
GCCCCAAACACCGAAGATCAAGTCAGCAGTCACCGGTAA
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