mRNA_P-littoralis_Contig199.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig199.2.1
Unique NamemRNA_P-littoralis_Contig199.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig199.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig199contigP-littoralis_Contig199:3994..5148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size423
Hectar predicted targeting categoryother localisation
Exons2
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789950.2721078-CDS-P-littoralis_Contig199:3993..40241680789950.2721078-CDS-P-littoralis_Contig199:3993..4024Pylaiella littoralis U1_48CDSP-littoralis_Contig199 3994..4024 +
1680789950.281407-CDS-P-littoralis_Contig199:4756..51361680789950.281407-CDS-P-littoralis_Contig199:4756..5136Pylaiella littoralis U1_48CDSP-littoralis_Contig199 4757..5136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789950.2898817-UTR-P-littoralis_Contig199:5136..51481680789950.2898817-UTR-P-littoralis_Contig199:5136..5148Pylaiella littoralis U1_48UTRP-littoralis_Contig199 5137..5148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig199.2.1prot_P-littoralis_Contig199.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig199 3994..5136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig199.2.1

>prot_P-littoralis_Contig199.2.1 ID=prot_P-littoralis_Contig199.2.1|Name=mRNA_P-littoralis_Contig199.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
NLQGVGSFQRNGRRRRSKRAESAAAPIVKVNSGTPNATGKPETPPSSLAA
TPTTSTAPNGRKRKRKGADPAAAPIIEADSGTATATDLENTSAGFAPSAA
PAAASESGRCRSGRVIVKSRRATESKGVASIKDSDG*
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mRNA from alignment at P-littoralis_Contig199:3994..5148+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig199.2.1 ID=mRNA_P-littoralis_Contig199.2.1|Name=mRNA_P-littoralis_Contig199.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-littoralis_Contig199:3994..5148+ (Pylaiella littoralis U1_48)
AACCTGCAAGGGGTGGGAAGCTTCCAAAGGAGTGAGTCCGTGTGACCTTT
TTGTTTTGACTCTTTGTGCGCGGGCCGTCGCACATTGTAACCCTAGGTAG
ATGTGACTGTACACCGGGGtTTTTTGTTGGATAGAGGACAGATGAAACTA
CACATGTGTGGCGTTGTTTTTTTGTTGTTGTGGATAGACACAATTACATT
GTTGTGTTCTTGTTCCTGTGGATAGATACAATCGCATCGTTCTTTTTTTG
TTTATTGTAGTGGATATATAAAATCACATCGTTCCTGTACTGTTTTTGTT
TAGAAGATGGGCAAAATAATACCGTTCAGTTTTTTTTATCATTTGCGATA
CAGTAGATAAAATCACCCCGTTCATATACTGTTTATTTTGTTGGAGTGGA
TAGACAAAATCACATCGTGTTTGTATATGTTTACTTTTTTTGTGGCGGAT
GAAACAAATCGCACGTTTTTTTtaTGTTTTTTTGTGATCACACTGTTCTT
GTACTCATCTTGTGTTTGGTATTGTGTTTTTACACTCTACTTGTATTTTT
TTTAGGGTCAGGAAAAAACAAATCACACTCTTTTTTTCATTTTGTAGCGC
GTAGATGAAATCCCGTCGTTATAACACCCACGTTCTTGTGCTATTTTTGA
AAGTGCAAACATCACATGTCCATGAAACCATACCCATCTTGTATTGTACA
TACTTCATAGACATAATCACCCTGCCGTTCTTGTACCTTTTTTTTCAACG
TCGGCTGCGACAGATGGTAGGCGGAGAAGGAGTAAGAGAGCGGAGTCAGC
AGCGGCGCCAATCGTTAAGGTTAACAGCGGTACACCAAACGCCACTGGCA
AGCCAGAAACACCGCCGTCATCGCTTGCTGCCACGCCAACAACGTCGACT
GCGCCCAATGGTAGGAAGAGGAAAAGGAAGGGAGCGGACCCAGCAGCGGC
ACCAATCATTGAGGCAGACAGCGGCACAGCGACGGCCACTGACCTCGAAA
ATACGTCTGCAGGGTTTGCCCCTTCCGCGGCACCAGCGGCGGCGTCCGAG
AGCGGGAGGTGTAGGAGCGGCAGGGTGATAGTAAAATCGCGGAGAGCCAC
AGAGTCCAAGGGAGTTGCATCCATCAAAGACAGCGACGGATGAGCAGTTG
GTTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig199:3994..5148+

>mRNA_P-littoralis_Contig199.2.1 ID=mRNA_P-littoralis_Contig199.2.1|Name=mRNA_P-littoralis_Contig199.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig199:3994..5148+ (Pylaiella littoralis U1_48)
AACCTGCAAGGGGTGGGAAGCTTCCAAAGGAATGGTAGGCGGAGAAGGAG
TAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGGTTAACAGCGGTA
CACCAAACGCCACTGGCAAGCCAGAAACACCGCCGTCATCGCTTGCTGCC
ACGCCAACAACGTCGACTGCGCCCAATGGTAGGAAGAGGAAAAGGAAGGG
AGCGGACCCAGCAGCGGCACCAATCATTGAGGCAGACAGCGGCACAGCGA
CGGCCACTGACCTCGAAAATACGTCTGCAGGGTTTGCCCCTTCCGCGGCA
CCAGCGGCGGCGTCCGAGAGCGGGAGGTGTAGGAGCGGCAGGGTGATAGT
AAAATCGCGGAGAGCCACAGAGTCCAAGGGAGTTGCATCCATCAAAGACA
GCGACGGATGA
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