mRNA_P-littoralis_Contig199.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig199.1.1
Unique NamemRNA_P-littoralis_Contig199.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig199.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig199contigP-littoralis_Contig199:2947..3870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789950.2134595-CDS-P-littoralis_Contig199:2946..31011680789950.2134595-CDS-P-littoralis_Contig199:2946..3101Pylaiella littoralis U1_48CDSP-littoralis_Contig199 2947..3101 +
1680789950.222629-CDS-P-littoralis_Contig199:3782..38491680789950.222629-CDS-P-littoralis_Contig199:3782..3849Pylaiella littoralis U1_48CDSP-littoralis_Contig199 3783..3849 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789950.2313378-UTR-P-littoralis_Contig199:3849..38701680789950.2313378-UTR-P-littoralis_Contig199:3849..3870Pylaiella littoralis U1_48UTRP-littoralis_Contig199 3850..3870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig199.1.1prot_P-littoralis_Contig199.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig199 2947..3849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig199.1.1

>prot_P-littoralis_Contig199.1.1 ID=prot_P-littoralis_Contig199.1.1|Name=mRNA_P-littoralis_Contig199.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MGLLVAGEDAVDEDRSAAAQEKETWAAGGIARARDEEGCCCWGGSDRQSS
PKVISSSPTGVNNSSTADRGNGL*
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mRNA from alignment at P-littoralis_Contig199:2947..3870+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig199.1.1 ID=mRNA_P-littoralis_Contig199.1.1|Name=mRNA_P-littoralis_Contig199.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=924bp|location=Sequence derived from alignment at P-littoralis_Contig199:2947..3870+ (Pylaiella littoralis U1_48)
ATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGC
CGCTGCTCAGGAGAAGGAGACGTGGGCGGCTGGCGGTATCGCCAGAGCAC
GAGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGACAAAGTTCG
CCAAAGGTGCGGTCCTTGTCGAAATGGTTCATTTTTTGTGTATGATTGAT
AAGTCTGTCCTGCGTTGGCAATGGTACGTTGATGTTACGCTTTCGTGTCC
GTAATTTGGTTAATTGTAGAGCTTCCCCTCTAATATCAAGTACTTGTAGA
ATAGCGAGAGACAGCGAGAGACATTGCCGTATGAAAGGGTTAGTAAGATA
CGACAACTAATGAAGCGATTTAAAATTACAGATACTCCACACCGAAGAGA
GCATCACCATCAAACGATACGTTTACTCTCGATACGTTTCGAACACGCCC
TTTACGGCACCGACACATGTAATGAATCGTGCTTTATATATCGGTCCAGG
GGGGTCCGTCGTATCTTACGGCACCCACGGAACACACGCGTCACGCCGCC
ACACACAACGCTGTACAGCTGTATTCTGCTGTACAGCTGTATTCTACTGT
ACTGCTGCTGCTGTACTGCTGCTGCTGCTTCGCTGCTTGTTATGCTGTAC
TGCTGCTGCTgGGATGTGTAATGATGTATCATCTTGAAGTATCACCTCAC
TCGAGACGGAAAGCATAGCAGTGGCACCATTACAACAACACAAGAACAGA
AGTACAGCAAGACAAGAGCGTTGTGTGTGCGGCAGGCTGCGGTGTGATGT
GTAAATGCTGTGATGCGAAATTTTAACACGAAAACTGGTGATATCATCAT
CACCTACAGGCGTCAACAACAGTAGTACAGCCGACCGTGGGAACGGACTG
TAGACATGCTCGTAATGCTGGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig199:2947..3870+

>mRNA_P-littoralis_Contig199.1.1 ID=mRNA_P-littoralis_Contig199.1.1|Name=mRNA_P-littoralis_Contig199.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig199:2947..3870+ (Pylaiella littoralis U1_48)
ATGGGATTGCTGGTTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGC
CGCTGCTCAGGAGAAGGAGACGTGGGCGGCTGGCGGTATCGCCAGAGCAC
GAGATGAGGAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGACAAAGTTCG
CCAAAGGTGATATCATCATCACCTACAGGCGTCAACAACAGTAGTACAGC
CGACCGTGGGAACGGACTGTAG
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