mRNA_P-littoralis_Contig198.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.71.1
Unique NamemRNA_P-littoralis_Contig198.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig198.71.1 vs. uniprot
Match: A0A6H5L9T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.460e-37
Identity = 99/177 (55.93%), Postives = 119/177 (67.23%), Query Frame = 2 
Query:  206 SSPLSENEIGEKGPERRAKPRASSIISDVGDVGGGGGRGKGLARRLSPPLSAVARQLRQTAGTTLAAVLIVASSSTEQDIMTAMMGLDPSLAPAKSGTQTVMTLREESGETSAAPGPADPSRLGSIDLTGQSSGAGEIAGGPGGGFKNGRLMVDQTSDLAMMLGKKMKTPDAEPRTH 736
            SS   E E GE+G  RR   R +S  SD+ D+ G   R +  + R +  ++A+A  L QTA T LAA+L++AS  TEQDIMTAMMGLDPSLA + +  Q  MTL +E G  +        S +GSID+ GQ    GEIAGGPGGGFKNGRLMVDQ SDLAMMLGKKMKTPDA+P TH
Sbjct:   68 SSSRPEGEAGEEGQRRRPAHRGASSGSDL-DLKGAAPRHR--SSRAAAAVAALA-PLPQTAVTALAAILMLAS--TEQDIMTAMMGLDPSLATS-TAAQPAMTLPKEEGPQAKG---GKASSMGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 234
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BLAST of mRNA_P-littoralis_Contig198.71.1 vs. uniprot
Match: D8LDN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.140e-31
Identity = 73/104 (70.19%), Postives = 80/104 (76.92%), Query Frame = 2 
Query:  425 SSTEQDIMTAMMGLDPSLAPAKSGTQTVMTLREESGETSAAPGPADPSRLGSIDLTGQSSGAGEIAGGPGGGFKNGRLMVDQTSDLAMMLGKKMKTPDAEPRTH 736
            +STEQDIMTAMMGLDPSLA + +  Q  MTL +E G    A G   PS +GSID+ GQ    GEIAGGPGGGFKNGRLMVDQ SDLAMMLGKKMKTPDA+P TH
Sbjct:    3 ASTEQDIMTAMMGLDPSLATS-TAAQPAMTLPKEEGPQ--AKGGKAPS-MGSIDVQGQGDALGEIAGGPGGGFKNGRLMVDQDSDLAMMLGKKMKTPDADPLTH 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9T3_9PHAE1.460e-3755.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDN5_ECTSI6.140e-3170.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:356152..358282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1719
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_001340.1
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789949.6743448-UTR-P-littoralis_Contig198:356151..3564201680789949.6743448-UTR-P-littoralis_Contig198:356151..356420Pylaiella littoralis U1_48UTRP-littoralis_Contig198 356152..356420 +
1680789949.6851292-UTR-P-littoralis_Contig198:356832..3570081680789949.6851292-UTR-P-littoralis_Contig198:356832..357008Pylaiella littoralis U1_48UTRP-littoralis_Contig198 356833..357008 +
1680789949.7101285-UTR-P-littoralis_Contig198:357302..3582821680789949.7101285-UTR-P-littoralis_Contig198:357302..358282Pylaiella littoralis U1_48UTRP-littoralis_Contig198 357303..358282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789949.6956434-CDS-P-littoralis_Contig198:357008..3573021680789949.6956434-CDS-P-littoralis_Contig198:357008..357302Pylaiella littoralis U1_48CDSP-littoralis_Contig198 357009..357302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.71.1prot_P-littoralis_Contig198.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 357009..357302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.71.1

>prot_P-littoralis_Contig198.71.1 ID=prot_P-littoralis_Contig198.71.1|Name=mRNA_P-littoralis_Contig198.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MTAMMGLDPSLAPAKSGTQTVMTLREESGETSAAPGPADPSRLGSIDLTG
QSSGAGEIAGGPGGGFKNGRLMVDQTSDLAMMLGKKMKTPDAEPRTH*
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mRNA from alignment at P-littoralis_Contig198:356152..358282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.71.1 ID=mRNA_P-littoralis_Contig198.71.1|Name=mRNA_P-littoralis_Contig198.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2131bp|location=Sequence derived from alignment at P-littoralis_Contig198:356152..358282+ (Pylaiella littoralis U1_48)
TTTACCACCACCTGTTTTTCCTGGGAGTAGCGCGCACACGGGGGCGGGAG
TCACTTCGGCAGCTGCTGCAGCTGCAACAGCTGCAGAAACAGCAAGAGCA
ATAGCAGGAGTGGAAGCAGCGAGGTCATCATGCAACCACAGACGACCACT
GAGCGTCGTAGGGAGGGGGCGGGCTCGTCGCGCGACAATCGAAGCCCTTG
GCGCCTCGTCGCCCCTGTCCGAGAACGAGATCGGAGAGAAGGGGCCGGAG
AGGCGAGCAAAACCGCGAGGTACTGTACACATCGCCGGATTTGGAGGCTC
GTGACGGGTCATCGTCAATCAATATTTCGGCTTGGTCTTCCGTTGGCGGG
AAATTCAAAGCCGTTTTTTTTGTTCGAGAGCCGTCGGTCGGCTTGTGTGT
AGACATGGCGTGTGTTGTTTGCTGGCTACGAAGATGGTCCGGGTGTGTAA
ATTCTTTGTTCCGTTTGGGATGTGATTTATTATTTTGCTACTTTCGCGGG
GCCAAAGGGTAAATAAACACGACCATGGGAGTTTTTCGCGGGGTACATAG
ATGCCGTTACTTGTCCAACTCCGCCTGTAGATCGGAGCGATGATTTGCCA
CGAAAACTCATGGTACAATCGAACATATGACCACCTCCCTTCCATTTCTT
GCTTGCCCCTCCCGCCAAACACATTCGACAGCTAGCAGCATAATCAGCGA
CGTCGGCGACGTCGGCGGTGGCGGTGGCCGCGGTAAGGGGCTCGCTCGAC
GCCTGTCACCCCCCTTATCAGCCGTGGCGCGGCAGTTGCGACAAACGGCG
GGAACCACTCTAGCGGCGGTCTTGATTGTCGCTTCGTCGTCCACCGAGCA
AGACATCATGACGGCGATGATGGGGCTAGACCCCTCCCTGGCGCCCGCCA
AAAGCGGCACACAGACCGTGATGACCCTTCGCGAGGAAAGCGGGGAGACG
TCAGCCGCGCCGGGACCGGCAGATCCATCGCGGTTGGGGTCGATCGACCT
GACGGGACAGAGCAGCGGCGCCGGGGAAATTGCCGGAGGGCCTGGCGGAG
GGTTCAAGAACGGGAGGCTCATGGTCGACCAGACCTCCGACCTGGCGATG
ATGCTCGGCAAAAAGATGAAAACGCCGGACGCGGAGCCTAGGACGCACTG
ATTGATCGTTCGCACCGGCGGTACACGGGCGGTATTTGACCGATGAAAAC
TGATTTCACGTACGTATATACGTGTTATTTGTTGTTGACCCCCTCGAGCA
AACCGCGCGTGCGGCAGCTGAACTCCGTGTGAGCAAGGGGCACCGCAGCA
GTCCTAGCAGTCCTTCTGTTGGGGTGGAGAAGTGGCCGGTTGAGTGCGGC
CACTCACCTTGGTATGATACTACCACGGGAGAAAACGGATCATAGTCGTA
TCATTCATAGATTTTATGAATATCATAGCCGAGGATAAGACGGGTTGTGG
TCGGTCGGCCTGTTGCCTGGGGACATTTCATAGTTTGATAAACGTGTGAT
ATGCGTACGAAAAGAAAACAGGTGTAATGCGCTAACAGCGAAATTGTCGG
GGTGGCACTGTGGCGGCTTGTTGTGTGGCCACTGACTTGCCACGTGGATT
TTACAGGCACATGACTGCCGAAGAAACAGCACGGGTCGTGGTCTTGACTG
AACCGATTCTGAACGATCGGCAGCCTCGTACAAGTAGGCTGTAGGTAACA
CTTCAGGGAATATGCCATGTGTGCTGCATGATACGTGCACTTCTGTTGTG
CGATGAAAAATTAAGTATTTTGTTGTGTGATGGAGAGCCTTTTCTTATCG
AAAGGGGTGGACGGACGGTGGAAGCAACGGCCCTGCCTTTTCGTGCGTGT
GCCGCCCCTACGGTAGCCCTCTCTCCCTGTATTGCCCGAGGCCAAGCATT
AGCAGTTTATTGGGTTTTTTTCAGATCGGGAAACGTCGGACATTCTTTCA
GGAAAACATCCTCCGATGAAAACGCGTGTTGATGGCTCTCTGATTTCATC
CTGATATAAGACCATCACGTGCTGTGTGCGGAAGTTAACACACCCAGCAA
GATTTGTGATGCCCGATTTCTCAACAGTCTATCAACAGCGTGCCAAAGTA
TGCACCCCACGGCAACGGTGACGTACCCTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig198:356152..358282+

>mRNA_P-littoralis_Contig198.71.1 ID=mRNA_P-littoralis_Contig198.71.1|Name=mRNA_P-littoralis_Contig198.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig198:356152..358282+ (Pylaiella littoralis U1_48)
ATGACGGCGATGATGGGGCTAGACCCCTCCCTGGCGCCCGCCAAAAGCGG
CACACAGACCGTGATGACCCTTCGCGAGGAAAGCGGGGAGACGTCAGCCG
CGCCGGGACCGGCAGATCCATCGCGGTTGGGGTCGATCGACCTGACGGGA
CAGAGCAGCGGCGCCGGGGAAATTGCCGGAGGGCCTGGCGGAGGGTTCAA
GAACGGGAGGCTCATGGTCGACCAGACCTCCGACCTGGCGATGATGCTCG
GCAAAAAGATGAAAACGCCGGACGCGGAGCCTAGGACGCACTGA
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