mRNA_P-littoralis_Contig198.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig198.55.1
Unique NamemRNA_P-littoralis_Contig198.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig198contigP-littoralis_Contig198:281555..282079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size278
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789948.9837794-CDS-P-littoralis_Contig198:281554..2817631680789948.9837794-CDS-P-littoralis_Contig198:281554..281763Pylaiella littoralis U1_48CDSP-littoralis_Contig198 281555..281763 +
1680789948.9963174-CDS-P-littoralis_Contig198:282010..2820771680789948.9963174-CDS-P-littoralis_Contig198:282010..282077Pylaiella littoralis U1_48CDSP-littoralis_Contig198 282011..282077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig198.55.1prot_P-littoralis_Contig198.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig198 281555..282077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig198.55.1

>prot_P-littoralis_Contig198.55.1 ID=prot_P-littoralis_Contig198.55.1|Name=mRNA_P-littoralis_Contig198.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
DVSVDRCKASTGKGKKTLLRSLSLGGSRGSAGRKSAGRKSAGRKVVDKLK
GILEPIPKASRPPAVRHRSRIEEHMADLAAEAYQSPGRSPSS
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mRNA from alignment at P-littoralis_Contig198:281555..282079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig198.55.1 ID=mRNA_P-littoralis_Contig198.55.1|Name=mRNA_P-littoralis_Contig198.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig198:281555..282079+ (Pylaiella littoralis U1_48)
GACGTCAGTGTCGACCGCTGCAAGGCCAGCACGGGAAAGGGGAAAAAAAC
GCTTTTGCGCAGCTTGTCGCTAGGAGGTAGCCGTGGTAGTGCCGGGAGAA
AAAGTGCCGGGAGAAAAAGTGCCGGGAGAAAAGTCGTTGACAAGCTGAAA
GGCATACTGGAGCCGATACCAAAGGCGTCACGGCCTCCTGCCGTCAGACA
CAGGAGCAGGTGGGTGGTGGTTGGTTTGTCGCTCATAGTGCGACTTATGT
TCTTAGCAGTATATACTCAAGAGTGTGGGTGTTTTCGTCGTCGTATGCTC
CCACCAATGTGGCTGTTGGTTTTATTGGTGGACGTATCGCACTTATGCCC
GCAATGGTGTCGTGACGATGGTAGGGGGAGACTGGTGCTGTCCCCACCAC
CCCACCCCTCACGCCCCACGCACGGAAAACACGCGGCCGTATTGTTTCTT
ACACAGGATCGAAGAGCACATGGCTGACCTAGCGGCCGAGGCGTACCAAT
CACCGGGCCGTTCTCCTTCGTCCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig198:281555..282079+

>mRNA_P-littoralis_Contig198.55.1 ID=mRNA_P-littoralis_Contig198.55.1|Name=mRNA_P-littoralis_Contig198.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig198:281555..282079+ (Pylaiella littoralis U1_48)
GACGTCAGTGTCGACCGCTGCAAGGCCAGCACGGGAAAGGGGAAAAAAAC
GCTTTTGCGCAGCTTGTCGCTAGGAGGTAGCCGTGGTAGTGCCGGGAGAA
AAAGTGCCGGGAGAAAAAGTGCCGGGAGAAAAGTCGTTGACAAGCTGAAA
GGCATACTGGAGCCGATACCAAAGGCGTCACGGCCTCCTGCCGTCAGACA
CAGGAGCAGGATCGAAGAGCACATGGCTGACCTAGCGGCCGAGGCGTACC
AATCACCGGGCCGTTCTCCTTCGTCC
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