mRNA_P-littoralis_Contig198.39.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.190e-50 Identity = 82/145 (56.55%), Postives = 107/145 (73.79%), Query Frame = 1
Query: 1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRGRQSFAVEVWFVW 435
V ALL ++++ G VLD CGS DA +VL + L+V TND + +L AD+H+D T+ +F +FS E +RPDWIV+SPPY NAF+I +AL +VR GVAFKLRL+FLEPTK+RG WL +N P VVVLPRA+Y GR + E WF+W
Sbjct: 15 VDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSILVRALGVVRVGVAFKLRLSFLEPTKTRGKWLKDNPPSAVVVLPRATYCGRVCSSTEAWFIW 159
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A252D8B1_9NOSO (Uncharacterized protein n=1 Tax=Nostoc sp. RF31YmG TaxID=1932668 RepID=A0A252D8B1_9NOSO) HSP 1 Score: 90.1 bits (222), Expect = 6.920e-20 Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query: 1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMD-VTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRG--RQSFAVEVWFVWWK 441
V LL H+++ G +L+ C + A S L GL V+T D IAD+ D TT ++ Q + DW+V++PP+ +A I +A GVAF LRL++LEP K RG WLAE+ P+L+V LPR S+ G + W +W K
Sbjct: 26 VDTLLNHIDITGTLLEPCNGSG-AISNRLKEDGLSVITTD-----IADNPQDDATTHQYW----QRQKPYDWVVTNPPFDSASKILPKAYEYASVGVAFLLRLSYLEPCKDRGQWLAEHPPKLIV-LPRISFTGDGKVDSCTCAWMIWKK 164
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.070e-18 Identity = 49/132 (37.12%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 52 CGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLF--SQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASY-RGRQSFAVEVWFVWW 438
CG DA + L ++TNDV AD++++ + F + F + +RP+W+V+SPPY A + A+ + KGVAFK+ + FLEP RG WL N P + V L RA Y R + E W VW+
Sbjct: 2 CGGPTDAVATRLRST-CEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWY 132
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5K6T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T5_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.780e-14 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query: 283 GVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASYRGRQSFAVEVWFVW 435
GVAFKLRL FL P KSRG WL +N P+ +V+LPRA+YR R+ + E WFVW
Sbjct: 2 GVAFKLRLTFLGPAKSRGRWLKDNPPDRIVMLPRATYRRRRCSSTETWFVW 52
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5KU02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU02_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 2.280e-13 Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 1
Query: 139 ADSHMDVTTRDFYDLF--SQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVVVLPRASY-RGRQSFAVEVWFVWW 438
AD+++D + F + F + +RP+W+V+SPPY A + A+ + KGV FK+ ++ LEP RG WL N P + + L RA Y R + E W VW+
Sbjct: 137 ADTNLDASLESFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVEFKMPISCLEPCADRGGWLQTNPPSVCLFLRRAKYTRANNAKMGEFWGVWY 239
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5L6X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.430e-9 Identity = 41/77 (53.25%), Postives = 46/77 (59.74%), Query Frame = -2
Query: 150 GSTTTNSG*FSASHGPLLLVGSRKFSLNLNATPLRTIRNACCQIAKAFWYGGLETIQSGRRVSWLNRS*KSLVVTSM 380
G TT + SH PL+LVGSRK SL+LNATP R I A +IAKA YGGL T SGRR S S VV S+
Sbjct: 160 GMTTPVAEAKHLSHCPLVLVGSRKVSLSLNATPTRPILKARFKIAKACLYGGLVTTHSGRRPSSQKVSTNVSVVASI 236
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A1V5ZCZ4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZCZ4_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 8.840e-8 Identity = 50/161 (31.06%), Postives = 72/161 (44.72%), Query Frame = 1
Query: 7 ALLEHL--EVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQETRRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEPTKSRGPWLAENYPELVV----VLPRASYR------------GRQSFAVEVWFVW 435
ALL L E+NG +L+ + L G G + TND+D D D T D + DW+V++PP+ A I A+ R GVAF LRL+++EP +R WL Y + ++ + PR +R G + V WFVW
Sbjct: 18 ALLARLGNEINGRILEPTAGAGQI-ARALAGNGRTIFTNDIDPNHGCDFASDAT--DPFAFCWGLYGGIDWVVTNPPFSLAEDILANAMSYARVGVAFLLRLSYMEPVTTRAAWL-NGYADKMIYQGALNPRPHFRKGEINPKTGKKYGTDNVTV-AWFVW 173
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 2.410e-6 Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 1
Query: 1 VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRDFYDLFSQET--RRPDWIVSSPPYQNAFAIWQQALRIVRKGVAFKLRLNFLEP 321
V AL + + G VLD CG DA V G+G TN +D + F D F ++ ++PDW+V+SPPY+ + AL + KGVA KL L P
Sbjct: 55 VDALRAAVAITGCVLDMCGGPEDA---VAQGFG-GTCTN-----------LDASLVYFPDEFIKDNPGKKPDWVVTSPPYKGSVGFVHAALAVATKGVALKLSLYSWNP 148 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig198.39.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig198.39.2 >prot_P-littoralis_Contig198.39.2 ID=prot_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp VQALLEHLEVNGLVLDCCGSTRDAPSMVLTGYGLHVVTNDVDHKLIADSHback to top mRNA from alignment at P-littoralis_Contig198:147285..148102- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig198.39.2 ID=mRNA_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=818bp|location=Sequence derived from alignment at P-littoralis_Contig198:147285..148102- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig198:147285..148102- >mRNA_P-littoralis_Contig198.39.2 ID=mRNA_P-littoralis_Contig198.39.2|Name=mRNA_P-littoralis_Contig198.39.2|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig198:147285..148102- (Pylaiella littoralis U1_48)back to top |