mRNA_P-littoralis_Contig194.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.73.1
Unique NamemRNA_P-littoralis_Contig194.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5L3Z2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Z2_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.810e-42
Identity = 78/133 (58.65%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVGG--AGDCVE-EEPLLHFRNG--AAPGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEV 378
            +W+ D   +  +AFYGV  EPG       G+ AE   L +GG  A + +   EPLLHFRNG  + PGV+RQRGPDIGEAELS++HFIV AK+YWGK FDKW+V+SVDTD WMIILLAM+TG  +P+G GAV+V
Sbjct:  114 VWTGDTKPNGIVAFYGVGGEPGLCADHPAGVDAEGEDLEMGGISAAEALSGTEPLLHFRNGNDSIPGVERQRGPDIGEAELSVIHFIVWAKKYWGKSFDKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDV 246          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 6.670e-42
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVGGAGDCVE---EEPLLHFRNGAAP--GVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +  +AFYGV  EPG       G+ AE   L +GG G        EPLLHFRNG  P  GV+RQRGPDIGEAELS++HFIV AKRYWGK+F KW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++V
Sbjct:  405 VWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPVLGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVV 543          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 7.000e-42
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVGGAGDCVE---EEPLLHFRNGAAP--GVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +  +AFYGV  EPG       G+ AE   L +GG G        EPLLHFRNG  P  GV+RQRGPDIGEAELS++HFIV AKRYWGK+F KW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++V
Sbjct:  393 VWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVV 531          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.660e-41
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVGGAGDCVE---EEPLLHFRNGAAP--GVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +  +AFYGV  EPG       G+ AE   L +GG G        EPLLHFRNG  P  GV+RQRGPDIGEAELS++HFIV AKRYWGK+F KW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++V
Sbjct:  482 VWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVV 620          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.760e-41
Identity = 81/139 (58.27%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVGGAGDCVE---EEPLLHFRNGAAP--GVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +  +AFYGV  EPG       G+ AE   L +GG G        EPLLHFRNG  P  GV+RQRGPDIGEAELS++HFIV AKRYWGK+F KW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++V
Sbjct: 1501 VWTGDTKPNGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVV 1639          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 4.740e-41
Identity = 79/137 (57.66%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA-LSVGGAGDCVE---EEPLLHFRNG--AAPGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRI 393
            +W+ D   +  +AFYGV  EPG       G+ AE  L +GG G        EPLLHFRNG    PGV+RQ GPDIGEAELS++HFIV AK+YWGK+FDKW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++
Sbjct:  612 VWTGDTKPNGIVAFYGVGGEPGLSADHPAGVDAEGGLEMGGVGATEALSGTEPLLHFRNGNDPTPGVERQLGPDIGEAELSVIHFIVWAKKYWGKNFDKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKV 748          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 5.910e-40
Identity = 79/128 (61.72%), Postives = 94/128 (73.44%), Query Frame = 1
Query:   34 IAFYGVCSEPGEEESIETGISAEA--LSVGGAGDCVE---EEPLLHFRNGAAP--GVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +AFYGV  EPG       G+ AE   L +GG G        EPLLHFRNG  P  GV+RQRGPDIGEAELS++HFIV AKRYWGK+F KW+V+SVDTD WMIILLAM+TG  +P+G GAV+V VQ++V
Sbjct:  832 VAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHFRNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDTDLWMIILLAMTTGWLRPRGEGAVDVTVQKVV 959          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5KLM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM2_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.210e-38
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 1
Query:   88 GISAEALSVGGAGDCVEEEPLLHFRNG--AAPGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            G+S E   VG        EPLLHFRNG    PGV+RQRGPDIGEAELS+VHFI +AK+YWGK FDKW+V+S DTD WMIILL M+TG  +P+G GAV+V VQ++V
Sbjct:    4 GVSLEMGGVGATEALSGTEPLLHFRNGNDPTPGVERQRGPDIGEAELSVVHFIARAKKYWGKSFDKWIVSSADTDLWMIILLPMTTGWLRPRGEGAVDVTVQKVV 108          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: A0A6H5L0B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B5_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.860e-38
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEA--LSVG--GAGDCVEE-EPLLHFRNGA--APGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +   AFYGV  EP        G+ AE   L VG  GAG  + E EPLLHFR+G     GV+RQRGPDIGEAELS++HFIV AK+YWG+ FDKW+V+SVDTD WMIILLAM+TG   P+G  AV+V VQR+V
Sbjct:  200 VWTGDTKPNGIAAFYGVGGEPDLSVDHPPGVHAEGIGLEVGREGAGKALSETEPLLHFRDGTNTIEGVERQRGPDIGEAELSVIHFIVWAKKYWGESFDKWIVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVQRVV 338          
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Match: D8LKS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS2_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 3.840e-37
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEALSVG----GAGDCVEE-EPLLHFRN--GAAPGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVDTDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV 396
            +W+ D   +  +AFYGV  EP        G+ AE + +     GAG+ + E EPLL+FR+      GV+RQRGP IGEAELS++HFI  AK+YWGK FDKW+V+SVDTD WMIILLAM+TG   P+G  AV+V V R+V
Sbjct:   93 VWTGDTKPNGIVAFYGVGGEPDLSADHPPGVDAEGIGLEMAREGAGEALPETEPLLYFRDRTDTIEGVERQRGPYIGEAELSVIHFIAWAKKYWGKSFDKWVVSSVDTDLWMIILLAMTTGWLTPRGERAVDVTVLRVV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3Z2_9PHAE3.810e-4258.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTD3_9PHAE6.670e-4258.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE7.000e-4258.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE2.660e-4158.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE2.760e-4158.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYE1_9PHAE4.740e-4157.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K3_9PHAE5.910e-4061.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLM2_9PHAE1.210e-3863.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0B5_9PHAE2.860e-3857.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKS2_ECTSI3.840e-3752.52Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:191724..192119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size397
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789933.8486528-CDS-P-littoralis_Contig194:191723..1921191680789933.8486528-CDS-P-littoralis_Contig194:191723..192119Pylaiella littoralis U1_48CDSP-littoralis_Contig194 191724..192119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.73.1prot_P-littoralis_Contig194.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 191724..192119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.73.1

>prot_P-littoralis_Contig194.73.1 ID=prot_P-littoralis_Contig194.73.1|Name=mRNA_P-littoralis_Contig194.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
MWSEDNGRDRTIAFYGVCSEPGEEESIETGISAEALSVGGAGDCVEEEPL
LHFRNGAAPGVQRQRGPDIGEAELSLVHFIVQAKRYWGKDFDKWLVTSVD
TDEWMIILLAMSTGKSKPQGPGAVEVIVQRIV
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mRNA from alignment at P-littoralis_Contig194:191724..192119+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.73.1 ID=mRNA_P-littoralis_Contig194.73.1|Name=mRNA_P-littoralis_Contig194.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig194:191724..192119+ (Pylaiella littoralis U1_48)
ATGTGGTCAGAAGACAACGGGCGTGATCGGACCATAGCCTTCTACGGTGT CTGTAGTGAGCCTGGCGAGGAAGAGAGCATAGAAACTGGTATTAGCGCCG AGGCTCTCAGTGTTGGGGGGGCGGGGGACTGTGTAGAGGAAGAGCCTCTC CTGCACTTTCGAAACGGTGCGGCTCCGGGTGTACAGCGACAGCGCGGTCC GGATATTGGCGAGGCTGAGCTGTCACTAGTTCACTTCATCGTGCAGGCGA AGAGGTACTGGGGGAAGGACTTCGACAAGTGGCTCGTCACGTCAGTCGAT ACGGATGAGTGGATGATCATCCTACTAGCCATGAGCACGGGAAAGAGTAA GCCTCAAGGTCCGGGGGCGGTGGAGGTGATCGTGCAGAGGATTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:191724..192119+

>mRNA_P-littoralis_Contig194.73.1 ID=mRNA_P-littoralis_Contig194.73.1|Name=mRNA_P-littoralis_Contig194.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig194:191724..192119+ (Pylaiella littoralis U1_48)
ATGTGGTCAGAAGACAACGGGCGTGATCGGACCATAGCCTTCTACGGTGT
CTGTAGTGAGCCTGGCGAGGAAGAGAGCATAGAAACTGGTATTAGCGCCG
AGGCTCTCAGTGTTGGGGGGGCGGGGGACTGTGTAGAGGAAGAGCCTCTC
CTGCACTTTCGAAACGGTGCGGCTCCGGGTGTACAGCGACAGCGCGGTCC
GGATATTGGCGAGGCTGAGCTGTCACTAGTTCACTTCATCGTGCAGGCGA
AGAGGTACTGGGGGAAGGACTTCGACAAGTGGCTCGTCACGTCAGTCGAT
ACGGATGAGTGGATGATCATCCTACTAGCCATGAGCACGGGAAAGAGTAA
GCCTCAAGGTCCGGGGGCGGTGGAGGTGATCGTGCAGAGGATTGTG
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