mRNA_P-littoralis_Contig193.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.7.1
Unique NamemRNA_P-littoralis_Contig193.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:7568..7776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size200
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.5370932-UTR-P-littoralis_Contig193:7567..76101680789927.5370932-UTR-P-littoralis_Contig193:7567..7610Pylaiella littoralis U1_48UTRP-littoralis_Contig193 7568..7610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789927.5485075-CDS-P-littoralis_Contig193:7610..76511680789927.5485075-CDS-P-littoralis_Contig193:7610..7651Pylaiella littoralis U1_48CDSP-littoralis_Contig193 7611..7651 -
1680789927.557112-CDS-P-littoralis_Contig193:7661..77761680789927.557112-CDS-P-littoralis_Contig193:7661..7776Pylaiella littoralis U1_48CDSP-littoralis_Contig193 7662..7776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.7.1prot_P-littoralis_Contig193.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 7611..7776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.7.1

>prot_P-littoralis_Contig193.7.1 ID=prot_P-littoralis_Contig193.7.1|Name=mRNA_P-littoralis_Contig193.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
IYLDSSTIFGGNNKIRKLCLIPEHAPESGVCLSAYAGVFPLVDFLLFYFW
R*
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mRNA from alignment at P-littoralis_Contig193:7568..7776-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.7.1 ID=mRNA_P-littoralis_Contig193.7.1|Name=mRNA_P-littoralis_Contig193.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=209bp|location=Sequence derived from alignment at P-littoralis_Contig193:7568..7776- (Pylaiella littoralis U1_48)
ATATATTTGGACTCTAGCACTATCTTTGGCGGCAATAATAAGATACGGAA
GCTCTGCTTGATACCGGAGCATGCCCCTGAAAGTGGCGTGTGCTTGAGTG
CTTACGCAGGTGTATGTCACGGCAGTTCCCTTGGTTGACTTTCTACTCTT
CTATTTTTGGCGTTGACCTTCAGATCATGATAAATTTCCTGAAATGGGTA
AGGAAGCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig193:7568..7776-

>mRNA_P-littoralis_Contig193.7.1 ID=mRNA_P-littoralis_Contig193.7.1|Name=mRNA_P-littoralis_Contig193.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig193:7568..7776- (Pylaiella littoralis U1_48)
ATATATTTGGACTCTAGCACTATCTTTGGCGGCAATAATAAGATACGGAA
GCTCTGCTTGATACCGGAGCATGCCCCTGAAAGTGGCGTGTGCTTGAGTG
CTTACGCAGGTGTATTTCCCTTGGTTGACTTTCTACTCTTCTATTTTTGG
CGTTGA
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