mRNA_P-littoralis_Contig193.58.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig193.58.2
Unique NamemRNA_P-littoralis_Contig193.58.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A6H5KUF9_9PHAE (Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF9_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 5.150e-114
Identity = 167/224 (74.55%), Postives = 189/224 (84.38%), Query Frame = 1 
Query:   61 MTCCPCAKSFPNGMERVEGDPTFYCGPHRVGNTVLLCGKKEGRFPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVR-IPSPA---GNSPGAGACGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALMPHVRQSL 720
            MTCCPCAK+FP+G+ERV GDPTFYCGP RVGNT+LLCG KEGRFP+HC+VGPNW+CMLATY L+LTPTLAL++  T A++WVA+FIVC+TGSALLLAFS+TACSDPGIVYRPA R IP PA   G S G G    AV+DA   P  ME GG+LCGRCDVKRP GA HC+ CNVCVTKFDHHCPWTGKCIGEKNI FFYLFLGCL +HV +V  LALMP V+Q+L
Sbjct:    1 MTCCPCAKNFPDGLERVAGDPTFYCGPRRVGNTILLCGTKEGRFPQHCLVGPNWMCMLATYGLVLTPTLALLILVTGAKYWVASFIVCITGSALLLAFSMTACSDPGIVYRPAERRIPPPAAVGGESGGRGG-ETAVADATLPPMAMEEGGLLCGRCDVKRPAGAIHCTACNVCVTKFDHHCPWTGKCIGEKNIRFFYLFLGCLFLHVFVVGALALMPSVKQAL 223
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: D7G1J4_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J4_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.020e-57
Identity = 103/149 (69.13%), Postives = 113/149 (75.84%), Query Frame = 1 
Query:  283 ETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVR-IPSPAGNSPGAGACGAAV--SDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALMPHVRQSL 720
             T AE+WVA+FIVC+TGSALLLAFS+TACSDPGIVYRPA R IP                   DAA  P  ME GGVLCGRCDVKRP GA HC++CNVCVTKFDHHCPWTGKCIGEKNI FFYLFLGCL +HV +V  LALMP V+Q+L
Sbjct:    3 RTGAEYWVASFIVCITGSALLLAFSMTACSDPGIVYRPAERRIPXXXXXXXXXXXXXXXXXXEDAALPPMAMEEGGVLCGRCDVKRPAGAIHCNECNVCVTKFDHHCPWTGKCIGEKNIRFFYLFLGCLSLHVFVVGALALMPSVKQAL 151
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A7S2V8J0_9STRA (Palmitoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8J0_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.570e-43
Identity = 87/201 (43.28%), Postives = 114/201 (56.72%), Query Frame = 1 
Query:   82 KSFPNGMERVEGDPTFYCGPHRVGNTVLLCGKKEGRFPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLA-FSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIV 681
            K FP    RV+ D  FY  PH +G TVL+CGKK  RFP  C+VGP+W CML TY LI  P+   I +     H  A FIV +  + LLL  FSLTACSDPG +Y+         G+S  +   G    D        +   + CG C + RP  A HC +C  C  + DHHCPWTGKCIG++N+ FF +F   L+VH++++
Sbjct:    9 KQFPADQARVQND-VFYFTPHMIGRTVLICGKKRSRFPFQCLVGPDWHCMLLTYTLIGVPSGLFIHYAAYLLH-PAVFIVAILSTMLLLLLFSLTACSDPGTIYQEV------GGDSRRSNGEGGVSRDETRRQRGNDANRLECGACGISRPKSASHCYECQTCTDELDHHCPWTGKCIGKRNLFFFQMFTAYLVVHIILI 201
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A8J2SI51_9STRA (Palmitoyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SI51_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.490e-42
Identity = 87/185 (47.03%), Postives = 108/185 (58.38%), Query Frame = 1 
Query:  145 RVGNTVLLCGKKEGRFPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALM 699
            RVG T L+CGKK GR+P    VGP+W CML TY L+L PT+A I+F     HW A +   +TG A L+AFS  ACSDPG++YR A    S  GN                     EG    C RCDV RP  A HC +C VC+   DHHCPWTGKCIG++ +  F+ FL CL VH++ V V A++
Sbjct:   59 RVGATWLICGKKRGRWPLQWFVGPDWCCMLCTYTLVLVPTVAFIIF-IGEHHWAARYGAVLTGGATLVAFSSAACSDPGVIYREA----SQTGN---------------------EGDVHSCRRCDVIRPHEARHCYECQVCIDDLDHHCPWTGKCIGKRTLFAFHAFLICLSVHILFVVVGAIV 217
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A6U4K2Y5_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K2Y5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 8.290e-36
Identity = 89/222 (40.09%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:   58 DMTCCPC--AKSFPNGMERVEGD---PTFYCGPHRVGNTVLLCGKKEGRFPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAV--------RIPSPAGNSPGAGA-CGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIV 681
            D+  C C  AK FP   +R   D   P  Y  PHR  N VLL G +       C+VGP+W CML TY+LIL P+   ++   +  H +   I  +  S  + AF++TAC+DPGIVYR           R  SP    P       +  S    D   +  G  +C  C+V RP GA HC DC+VCV   DHHCPW+GKCIG +N+V+F  FL  L  H+V V
Sbjct:    2 DINKCLCRVAKEFPEARQRCIYDDEKPVLY--PHRFANMVLLMGSRRSGA---CIVGPDWFCMLVTYVLILVPSSFFLINVASRMHVIVLVIGLLGASLTVWAFTMTACADPGIVYRRRAGQRASHRSRAVSP--EEPQLSTDYSSRTSMRRDDDELLRLGYTMCSICEVPRPPGAQHCYDCDVCVEDLDHHCPWSGKCIGRRNLVYFRAFLALLTFHIVFV 216
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: I2CS30_NANGC (Palmitoyltransferase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CS30_NANGC)

HSP 1 Score: 145 bits (366), Expect = 1.260e-35
Identity = 80/219 (36.53%), Postives = 116/219 (52.97%), Query Frame = 1 
Query:  139 PHRVGNTVLLCGKKEGRFPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPA---------------GNSPGAGACGAA---VSDAASDPSTMEGGG--------VLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALMPHVRQS 717
            P  +G  +LLCG+K+G FP  C+VGP+W CML TY ++  P++  ++        V  ++   +    L  FSLTACSDPGIV+    ++P+                  N  G G+  A    V  + S  ++ +G          + C RC++ RP+GA HC +C VCV   DHHCPWTGKCIG KN+ FFYLFL  L VH++ +  +  M  +  +
Sbjct:   36 PQYIGRMILLCGRKDGIFPFQCLVGPDWPCMLITYTMVCVPSIFFLILVAPRVSSVIVWVGLASFMLTLFFFSLTACSDPGIVFW---QLPNGGEERSIDPESGTVVLHNNDCGNGSISATLPVVDQSTSLAASSQGFSSARNPVPQIPCSRCELSRPMGASHCYECEVCVKDLDHHCPWTGKCIGRKNLQFFYLFLTFLTVHIIFLGSVTAMTAINNT 251
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: M4BNT3_HYAAE (Palmitoyltransferase n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNT3_HYAAE)

HSP 1 Score: 136 bits (342), Expect = 3.300e-33
Identity = 76/191 (39.79%), Postives = 108/191 (56.54%), Query Frame = 1 
Query:  145 RVGNTVLLCGKKE---GRFPRHCMVGPNWLCMLATYMLILTPTLALIVF--ETAAEHWVATFI-VCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALM 699
            R G+T +LC   +   G FP  C VGP+W C+L TY L + P + L++F  E      VA F  +CVT  +L    +L ACSDPG+V++                       D  SD   +E G ++C +C+V+RP+ A HCSDC VC+ + DHHCPWTGKCIG++ I  FY+FL C+ +H ++V    L+
Sbjct:   20 RFGHTHVLCSLSQQHYGYFPTTCHVGPHWGCLLVTYFLAIGPFIFLMLFVDELRLGLQVALFASMCVTTVSL----TLVACSDPGVVFQ-----------------------DVESDVEDVESG-IVCAQCEVRRPLDASHCSDCGVCIRELDHHCPWTGKCIGKRTIKLFYVFLTCISLHCMLVGAACLV 182
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A5D6XHI2_9STRA (Palmitoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHI2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.030e-33
Identity = 73/188 (38.83%), Postives = 100/188 (53.19%), Query Frame = 1 
Query:  145 RVGNTVLLCGKKEGR-FPRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGG----GVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLA 693
            R GNT +LC       FP    +GPNWLCML TY + L P     + +          +V V   A   AF++ ACSDPG+V+                        ++   P+T++ G    GV+C +C ++RP  A HCSDC VC+ + DHHCPWTGKCIG + + +FY+FL C+ VHVV+V V A
Sbjct:   30 RYGNTRVLCAASGAHHFPLMWHIGPNWLCMLVTYAISLGPLAFFFMKDDVVLALRVALLVSVV--ATTCAFTMVACSDPGVVF------------------------ESCEPPATLQVGDAELGVICAQCQIRRPYDASHCSDCGVCIAQLDHHCPWTGKCIGGRTLRWFYVFLACVSVHVVLVGVTA 191
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: A0A8K1CEC4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEC4_PYTOL)

HSP 1 Score: 135 bits (339), Expect = 2.400e-32
Identity = 74/194 (38.14%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:  145 RVGNTVLL--CGKKEGRFPRHCMVGPNWLCMLATYMLILTPT-LALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGG-GVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVHVVIVAVLALMPHVRQ 714
            R G T +L  C  + G FP    +GPNW CML TY + + P  LAL+  + A    +A  +  V  + +   FS+ ACSDPG+V+     +              A + D A   S  E   GV+C +C ++RP  A HCSDC VCV + DHHCPWTGKCIG++ +  FY FL C+ +H+V+V V   + ++ +
Sbjct:   48 RYGRTTVLYSCSAQYGYFPLTAHIGPNWPCMLVTYAIAIVPMILALVTDKVAYGLRIAMLVTSVITTVI---FSMVACSDPGVVFESYEPL--------------ATMEDGALQASRDEPDRGVICAQCQLRRPRNASHCSDCRVCVCELDHHCPWTGKCIGKRTLQLFYAFLWCITIHIVLVVVSFALAYISR 224
[Close]
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Match: W4GEC2_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEC2_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.830e-31
Identity = 77/201 (38.31%), Postives = 104/201 (51.74%), Query Frame = 1 
Query:   76 CAKSFPNGME-RVEGDPTFYCGPHRVGNTVLLCGKKEGRF--PRHCMVGPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSLTACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGGGVLCGRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCLMVH 669
            CA +    +E R E  P   C   + G T  LC +    F  P    VGPN  CML TY +IL PTL + VF  +   WV+  ++ V+ +   L+FS+ ACSDPG++    V                 AV D A         G+LC  C ++RP+ A HC +C VC+   DHHCPWTGKCIG+K + +FYLFL  + +H
Sbjct:   18 CASAEHEAIEVREEKLPVACCA--KFGRTRFLCQRSANAFYFPHVLHVGPNLGCMLITYSIILAPTL-IFVFANSLASWVSVLLI-VSIALTFLSFSMVACSDPGVIREHYVN----------------AVGDDA---------GILCAHCQIRRPLNAIHCYECEVCIDGMDHHCPWTGKCIGKKTLYWFYLFLWMICIH 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig193.58.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUF9_9PHAE5.150e-11474.55Palmitoyltransferase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7G1J4_ECTSI2.020e-5769.13Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S2V8J0_9STRA2.570e-4343.28Palmitoyltransferase n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SI51_9STRA1.490e-4247.03Palmitoyltransferase n=1 Tax=Pelagomonas calceolat... [more]
A0A6U4K2Y5_9STRA8.290e-3640.09Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
I2CS30_NANGC1.260e-3536.53Palmitoyltransferase n=2 Tax=Nannochloropsis gadit... [more]
M4BNT3_HYAAE3.300e-3339.79Palmitoyltransferase n=2 Tax=Hyaloperonospora arab... [more]
A0A5D6XHI2_9STRA6.030e-3338.83Palmitoyltransferase n=1 Tax=Pythium brassicum Tax... [more]
A0A8K1CEC4_PYTOL2.400e-3238.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GEC2_9STRA1.830e-3138.31Palmitoyltransferase n=1 Tax=Aphanomyces astaci Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig193contigP-littoralis_Contig193:223961..232608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1J4
PFAMsAnk_2,Ank_5,DHHC
Model size2148
Max annot lvl2759|Eukaryota
KEGG koko:K16675,ko:K18932,ko:K20032
KEGG TC9.B.37.1,9.B.37.3
KEGG Pathwayko04391,map04391
Hectar predicted targeting categorysignal anchor
Exons7
Evalue1.54e-63
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-07_001260.1
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size663
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig193.58.2prot_P-littoralis_Contig193.58.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig193 224021..231183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789929.510293-UTR-P-littoralis_Contig193:223960..2240201680789929.510293-UTR-P-littoralis_Contig193:223960..224020Pylaiella littoralis U1_48UTRP-littoralis_Contig193 223961..224020 +
1680789929.607484-UTR-P-littoralis_Contig193:231183..2326081680789929.607484-UTR-P-littoralis_Contig193:231183..232608Pylaiella littoralis U1_48UTRP-littoralis_Contig193 231184..232608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789929.5231297-CDS-P-littoralis_Contig193:224020..2240851680789929.5231297-CDS-P-littoralis_Contig193:224020..224085Pylaiella littoralis U1_48CDSP-littoralis_Contig193 224021..224085 +
1680789929.534154-CDS-P-littoralis_Contig193:224963..2250451680789929.534154-CDS-P-littoralis_Contig193:224963..225045Pylaiella littoralis U1_48CDSP-littoralis_Contig193 224964..225045 +
1680789929.5454757-CDS-P-littoralis_Contig193:227818..2278951680789929.5454757-CDS-P-littoralis_Contig193:227818..227895Pylaiella littoralis U1_48CDSP-littoralis_Contig193 227819..227895 +
1680789929.562464-CDS-P-littoralis_Contig193:228633..2288601680789929.562464-CDS-P-littoralis_Contig193:228633..228860Pylaiella littoralis U1_48CDSP-littoralis_Contig193 228634..228860 +
1680789929.5724528-CDS-P-littoralis_Contig193:229671..2297391680789929.5724528-CDS-P-littoralis_Contig193:229671..229739Pylaiella littoralis U1_48CDSP-littoralis_Contig193 229672..229739 +
1680789929.5823948-CDS-P-littoralis_Contig193:230721..2307511680789929.5823948-CDS-P-littoralis_Contig193:230721..230751Pylaiella littoralis U1_48CDSP-littoralis_Contig193 230722..230751 +
1680789929.598036-CDS-P-littoralis_Contig193:231069..2311831680789929.598036-CDS-P-littoralis_Contig193:231069..231183Pylaiella littoralis U1_48CDSP-littoralis_Contig193 231070..231183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig193.58.2

>prot_P-littoralis_Contig193.58.2 ID=prot_P-littoralis_Contig193.58.2|Name=mRNA_P-littoralis_Contig193.58.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MTCCPCAKSFPNGMERVEGDPTFYCGPHRVGNTVLLCGKKEGRFPRHCMV
GPNWLCMLATYMLILTPTLALIVFETAAEHWVATFIVCVTGSALLLAFSL
TACSDPGIVYRPAVRIPSPAGNSPGAGACGAAVSDAASDPSTMEGGGVLC
GRCDVKRPVGAFHCSDCNVCVTKFDHHCPWTGKCIGEKNIVFFYLFLGCL
MVHVVIVAVLALMPHVRQSL*
back to top

mRNA from alignment at P-littoralis_Contig193:223961..232608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig193.58.2 ID=mRNA_P-littoralis_Contig193.58.2|Name=mRNA_P-littoralis_Contig193.58.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8648bp|location=Sequence derived from alignment at P-littoralis_Contig193:223961..232608+ (Pylaiella littoralis U1_48)
GGCGGAGTGACTTAAGGTGGGGAAGCGGGCGAGGAGGAGGAGGAGGAGGT
AGAGGAGGATATGACTTGCTGCCCGTGTGCTAAGTCTTTTCCTAATGGAA
TGGAGAGAGTGGAAGGGGACCCCACGTGAGTTGAGTTGCCGTATGCTGCT
GGTGCGATATCTGTCGTCGGCCTGTCGGAAGGGCGGTGTGGGAGTCTTGT
CATGTGCGCCTTTTCTGTGCAATTTTTTTTCACAGGAGGGGGACCCGTCG
GAGTTCCAACCAACCGTAAGATTGTTTCTCGTTCGTTCGCACGTGACGTG
CACATCCAGCTGCAGCGTATGATATCATACTGCCTGCGATCGATGGCGTT
ACTTTTTCGCTGTTTCTTTTGCCCCGTGGCTGCGCCGCTCGCTGTAAAGG
TGTCGCTCTGACGGCAGAATCGGCTGCAGTGGGAGCTGTGATGGTTGCAG
CTGCTGTCGTTGTTCTTTTTCTTGTTCTTGTTCTTGTTGTTGTCGTTGTT
GTTGTTGATTCTCACATTAGGTCACTACCGCCGCAGTCTAGTCCGCGGTC
ACAAACCAGGCACATGTCGTTCGAGGAGGATAATAAAAAAATAAGACAAA
GGGAATAGTTGATGGTCACCAAATCAAATCAGATGGGGTACAGTTGAGGT
ACCATCTGTGGTGGCCAAAAGCACGAGAATACAGAAGTGGGTATTCCAGC
TGCTGCTGCCGCTGACTCGCGGTGAAAGAAAGGGCACCTCATGAAGAGCC
CCGGCAGCAGCGGGTGTGGGTGTGGTCTTGGCGCTATGATACTACTGCAG
GGCACCACACACGACGACTACAACAATATGATACCCAATTAGTGGCGACA
ACACGACCACCACCACCACCACCACCGCCACCGCCAGCAGACGAAACTGA
TGCTCGCACTGACTGTGATCACGATATGATGCAATATTCCGCGCGCCATG
TGCACGTCCGTTGCTGCCTTTGCGTGGTGCTTGGAACGAGTGATGCGATG
CAGGTTCTACTGCGGCCCACATCGAGTAGGCAACACCGTCCTCTTGTGCG
GGAAGAAAGAGGGCCGATTTCCGCGTCACTGCATGGTGAGAGGAATAGCC
CCGTGAGAGGAATATCGTACCCCGGTAGCCCTCTTGTATCTTATCATCCC
GGGTCGTTGTTTGCAGCAAATGCTTGCTGTGGTGCAAAAAAGAGCACGAA
GGGTCCAAAGCAACACTACGGCGGTATAATATGCGGTACAGCGGCAGTAC
GTACAGCAGTAGTGGATGGAGGTTTCTTTTTCTCCCTGTTTTTTTTTTTT
TTTCTCACGCAGACGTGATGGTACACACCTCTTCCTGCCAAAATGTGGTA
TCCATTCACCACCGCTGTACAAAATGTATCATGCGATGTTTCAAAAATGT
TCCGTGACTTTGAGGCAGGAATCGTGAGTGCACAGAGTGCAATGCGTGAT
TAGGTTCATTGGCATACGGAAAAAGAGGGTCGTCGACGGCAGGACTCGAA
CCTGCGCGTGAAATCACAATAGGTTTCTAATCTATCTCCTTAACCACTCG
GACACGTCGACTTCAGATGGAGGTCAAGACGGAAGTTGCGTTATTGAACT
CGCATTTTTATTAATATTTTTGTCACACAACACACGTCCAATCCAGAATT
GAAGCCTTGAAGGATCTACTGACAAGGGCGTTAAAAATTTCGAGGGACAA
ATCTTATTTCTGACCCAAAGAATAAATACGTTTCTCCCATCAAGTTAGAA
CAGCTTATTTGGAGTACACCTTTATTTGGCTTCACCTCTCACTTGGTCTG
TTGTGCAAGAAGTGTGATCCAAAGTGTTTCAACCAAGAGAGGCCAGCATG
GAGCAGCTACGTGTGTTTCGGCACGTTCAGACATGCTGCCCGGGCTGAGA
TATCGAAGGCTGCAGCAGTGGGGCCAAAAGTCCGCAAACTGTGGCCGAAC
TGGATTGACGCCAAAGGTTTTTCATTGCTGTACTCGCCGCCACATACCCC
AAACTTCCTGAACTGCGGGTCTACGGCAGTAGCTGGTGCCCCTTGTTACC
CCGAAGGACCGGCAGTGTACGTATTTGAGGTCCGTGGTGGCGAGCACAGC
AGTGACAACACCTTTGGTGTCGATCCAGTTCGGCAGCAGTTTGCCAAATT
TTTTAGCCACTGCTGCAGCTTTCGACATGTAAGCCCCAGCAGCATGTCTG
AACGTGCTGACACACACGTATATTGCTGCTCCATGGTGTCCTGTACTGAA
TGGAATACTTGGACAATACTCCTTGCACAGCAAGCCAAGTGAGAGGTTGA
GGCAAATAAACTGTTTTGGCTCGATTTTTAAGTAGTTAAATATGATGTTG
ACATGTACGAAGGCGATTGGAAGTAGACTTTTGTTGAGCATGTAAAGAGA
AGCCCCTGCCGCCGCTGAGTGCGTCAACCAATAATGTTTCTCTTTCCTGG
CGCCTTCCCACTGGTGTGAGGTACCCAGTGTGTGTATGATTTCAGGGCCC
CTTCGCTGGTTTTCAAAATCCTTGCCTCTCAACAATCTGTTGTCCCTGGA
CCCTTAACACAAGCACATTCCGGTACTCTTGGATTGCGTGGCCTGCCAAC
AAAGCGGACGTGCCCGCACAAGGATTTAGGAAAAATCGTAACAACCTCTG
CTGCTTGCTGTCCGCTGCTTGCACTGCGTGTACGAGAACTGGTTGTTCTT
GTCCCAGTACTCTTGTTGATGGCTGTTGTGTTTGGTTCTCGGTGGTTGAA
ATCTCATCCAGATTCTCTTGGATCCATGTGCGCTGTTACATTAATCCTCA
GGGCTGAGCGCGGATACCGCACAATCCCTCACATTTGACGCTACGTCCTG
GTGGTGCCGTAACCTTTTGCGAATTTCTTTCTGCTGCTGTGCCGTTTTCA
CAAACGACGAATCTGTGCACTTTCCCCGTTTTTTTGTATCACACCTCTTG
TGTGTGTTTCTGTGTGTGTTTCTGTGTTTCTGTGTTTCTCTGTGTGTGTT
TTAATATTAGGAGGTATTCGTTCTCCGCAGCTTTCTTTCTCGTCAAGTCT
CTGTAGTGAGCACAGCCGACGAAGCCCTTGAGGCTTTTACTCTAGAAACA
CAGCTATCAGAGCAGGTGCCTCTGGGGGCGCCTATTTCACGTAGAGTGTG
CTTGAGTTGTCCCCACCCATCACATTTTCAACTCAAAACGGGGAGTTGCT
TGCATCTGTATCCATGTTGCTGGGGGAACTGCTCGTATCGTAGTAGACAG
ATTGACTTCCTGCTTCTGTACCCCCTCATTCAAAAGTCCTGTGTCATGCG
GGTACATATGCTTACATTTTCGGTGTGGCTGATTGTGGTGGGCGCACTCA
TTTGCAACTGGGGATTGGCAAACTTCGTTTCTTACCAACCGAGAAACAAC
GCACCGGAGGGCACCCGAGGGGGAATAGGGGTGCCCGCTGGATTGCGATG
CTGTGATATTTACCATGTACGGATCCGCTTGTTTTGAAAGCCGGGGCAAA
ATACGCCCCGTGTGCTCAGCAAGATACAAGAGCGTGGGATAGCGCACGCT
GTCATTGTATCGTAGATACCGGCAATATATTTTTTTTTTTTGTGCGGTGT
GCCCCCCAACTCCACCCCGTGTAGCCTACAGCTAAAGCTGACGCCATTTT
GGAGGGGCGAAGGAAATACCATTGGTTTTCTGCTGTCGAAGGATGCTTGA
ACACTCTGCAGGGGCCAAACACTTCTACCGCTGCTGCTGCTGCGAATACT
GATGCCGAAACTGCTGTATTTGTTTCTGGTTACTGTAATTTCCTTTTTTT
TTAGGGGGGGAGACATCCGACATGCTTTTTTATTTTTATTTTTCTTGGTG
CATCACAGGTGGGCCCGAACTGGTTGTGCATGCTGGCGACGTACATGCTC
ATCCTGACGCCAACGCTGGCGCTCATTGTCTTTGAGTGAGTGCTTTCATT
GCTTTTTTTTCTCACAGTGTGCTCATGTGTGTTTGGCACGTGGTTTGGTT
CGATCGATATCCTTTGGTGTTGCCGCTTGTTGTATGCGGAGGAATAAGGG
TGGGTATTGAGATGATGGTCAGGGACCCTCTTCCACTCGGATGTTGGGGC
GCTCGGTCACTCGCTCTCTCCACTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTCTCTCTATATATCTCCGTGGTTAGCTTCGATGAGAT
GATGCAAAAATAACATTTCAACTATTTTTGGTGGTGTTTTTTTTTTTTTT
TTGCTGCTTTTCCGTTTCATCTAGCTGCGAAAGAGCTTTGACCGTTCTGT
CTCAAGAGTTCGAGCAAAGTGCGACAATCCCCAAGGCTCTGTTTGTCATA
TTTGCTGTACAAGTAGCGAAAGGATGTCTCGGGCCTGGATTGGATCCTAA
GTACCCCGTTCTCCCCCCGCTTGTGAACGCCACAATGACCAGATAGTCGC
TCCTCTTGTGACGTTGTACCACAAACGCCTCCTTCCGTTTCCCTGACCAC
CACTCGCATCTTCAGATTGTGCGACGTGCAAGCCCCATGCACGCACATGC
ACACACACATACATGATGAACATACGGGTATACATACACGCGTGTTCATC
TCGTAACCGCCTCCCCAAACCCCGCCCGACGCGGCACGTGGCATCCGTCA
CGCTGGTGGTACTCGGTCCGCAGGACTGCGGCGGAACACTGGGTGGCGAC
TTTCATCGTTTGTGTCACCGGGTCCGCGCTGCTCCTGGCGTTCTCGCTCA
CGGCTTGCAGCGATCCCGGAATCGTCTATCGTCCGGCGGTGAGAATACCG
TCGCCGGCCGGCAACAGTCCGGGCGCCGGTGCCTGTGGTGCTGCCGTGTC
CGATGCGGCCTCGGATCCCAGCACGATGGAAGGGGGGGGCGTTCTCTGCG
GTAAAGTACCCCGCTTGGATTTACTGGAATTAAAACTGAACCCTCTTTTT
TATTTTATTTTGAAAATGGGGATTTGAACTTGCTCCCTCAGCCTTTGAAA
ATGAGGATTTCAACTTGCTCCTAAGCCTTGTAACATGCACCAGGTTGTGC
TTTTTTTTTGTGTAGCCTGTGTTTGGCGAGGAGGACCTGCCTGAACGTGC
TGCGTCGGAGTTGGTTGAGAGTTGGTTTATGCGCACTTTGTACATGGCAC
ACACTTCGTACAACTACTAAATATATTGTTTTGTTTTTTATTTTCCAAGA
ACAACAACAAGAACAACAACGAATGCGTCGACTTTCCTTCCTCCGTAAGT
GTGACCCCGTCTGATGCGTCCAACTCGTACCAGAAGGTGTAGACTGCCGT
CGGCAGTCGATGGGATTGGAATGCACACACACTCACACACTCACACACAC
ACACACACACACACACACACACACACACACACACGCGTGCTCGCGATGAC
ACGAACACGTACACACACAAACACACCCACATACACACGCGCGCCGACGC
ACGTACTTAGGCCAATTGGAGCGTGCCGCGAGGAAAAGCCCTGAACGGCC
TGGAGACGGGAGTTCGCGAACCGGCATGCAATGAGCACCAGAATGTACCC
ACCCCTTTGTCACCCTTTTTTTTCAATGGTATAGTACCGTACTGTGATTT
TGAACTTGCCTCCGTACCATCGCGCTTGCTCGTCGCGCGAACACTGCCTT
GTGTGTATGATTTTCGTGTGTGCTCACATGCCATATGCCCAATGCGCGTG
GTACCATACAGGCCGTTGTGACGTGAAGCGGCCGGTTGGTGCATTCCACT
GTTCAGATTGCAACGTCTGCGTCACGAAGGTGTGTGAGTTTGTGTCAAGC
GAAAAGAAGGCGTGTGCGTGTAACATGAAAGGAGGCGTGTGTGCACGTGT
GTTTGTGTCACATGAAAAGAGGCGTGTGTGCACGGGTTTTTGTGTAAAAT
TAAACGAGGCGTTTGTGCATGTGTTCATGTGTAAAATGAAAAAAGGCGTG
TATGTAAGACGAAAAGAGGCGGACGTTCGTGTGTGTAGGATGAAAAGAGG
CGTGTGCGTATGTTTGTGTGTCAAGAGTGTGTGGGTGCTTGCGTCTGTCT
CGGGAGAGGCCGCGCCAAGCGGCCGACCATAAGCCAGACAGGGGTCGAAA
CAATCACGTGCTGGCTTCGTCATCTTTGGTTACAAAGGGATTGGAGAAGG
TGCGGGAGATTATCGTGGCTTCGCCTACCCCAGACCAGAGACATACCGAA
GAGCTGTGTGACCTGCTGCTGTGCTATACTGTACCCTGTATCGGAGATGT
CAGGGATCTGTGCAACGGAAGAGTTCTGATCTCGGCGTCCGCGTGTGTGG
TGTCCGCCAGGTGGAAACGTCCGGATATTCTAGAGTATTTCATCTGCAGA
GGCCGGCGGTATCGTGTTCTCCTTTTTGCCACGCACACGAGCATTGCTTT
CAACCGTTACTCCCGAACTGGCGAAACGCTGTCCCTCTCACACGCAAGGC
CACCCCCTCCCTTCTCTTTTCCACGGTTGTTCGCACTCTTCATTCCAAGC
ATTGCTTGCAACCATGACCTCCCAAACTGGCGAAGCGTTGTCCCTCTAAC
GCGCAAGGTCACCCCCGACCCCCCCCCCCCCCTCCCTCCTCTCCCCCCGG
TTGTTCGCACTCTACATTTCCGATATTTCCGTTGCTCCTGACGTCTTTTG
GTTCTCCCTTTTGCGTGTTTTTTTTTTTTTTGCTTGCCGGGTGGACGTTT
TGCCGTCACGATGCGGAACACGCGTTTCGATATGCCTGGGGATGTCTGTT
TCCGGAAGCAGTTCGATCACCACTGTCCTTGGACAGGAAAGGTAGGAGGG
GGCTCTGAGCAGCACGAAAAGCAGGGGGCATTGTATGGAGCGAAGGGATA
TTTCAAAGGCAGGAGCAGCACGATGGACCGGAAATACAGCAGTTGCACCC
TTCCCCTGTTTTTTTTTTTTCTGTCTTGGCTGTTATTGTTGTCGCCCCAC
GTCAGCGCACAAGCTACACATCATTACCCCGTCGCCCACGCACGAACGTT
ATTTTCTTCCTTGTCTTCTGTGTGTCTTGTTTTTGCTCACCCCCACCCCT
CTCCCCTATTCCCCTCCATTGGAACGTTTTTTTGTCATGTCAACTGCCGC
AAAAAAAAGTGCATCGGAGAGAAAAATATTGTTTTCTTCTACCTTTTCCT
GGGCTGCCTCATGGTGCACGTGGTCATCGTTGCCGTGCTTGCGCTCATGC
CACACGTCAGGCAATCCCTCTGAGGAAACACGACGGCGATCGGGCGATTT
AGGCCCTGCCGTGGGTTTCGTTGAACTCGCGGTTGGCGTTTGTGTGTTAC
GGGAGGCGTGCGGTTTTGTTGTCACGGAAAGAAGGGCCGCCCTCCCAAAG
ACGAGTATTACTGTAACATTGGTTTTTGTCGAAGGCGTGATGTGGTCAGA
AGGGGGTTGAAGAATGTAACTGTTGTGTGTACGACACGTACATACGAAGT
AAAATACTTGTGGCGTATACTACTGTACTGCTGTTTTGAGAGAAATCCCG
GATTGTGTGCGCCCGGATGGGGGAGTGCGGGTAAGGTTGTGCTGTGCTAC
TTGTCCAGCGCAGATGTGGCGTGCGATGTCGGCTTTGCGCGGCAGCACAT
CCGTGAGCGACATCTAAAGTGTTAGATGTCAGTGACTGATTTTGTGTGTT
GAATGTTTTGAAATCTTTACGACGTATTTGAAGGATTGAAAGAAAATTAG
GTACTCGAATGATGTTTTTGCCGGAAGGGACCTTCTGGCCAGACCCTTTT
TCAAGAATCCCTGCCGACTCCCCGAATGGAAACGTTTTGTGTGAAGTTCG
TGCTAAATTACATTTGTTTTTTTTTCTTGATCTATGTATTTTTGTGTGTT
CTTTTTGAGAATGCGATGTCTTCCTTGTTCCATGTATTTCTAAGAGCAGG
TCGCGCTTGTGCCTGATCGCGATACCGACCGAGATGTTTCGCGTAGATGT
CGGGGACATTTTTCCGTGTGTTGCTTGATCGTGATACCGACCGAGATGTT
TCTCGTACAGTAAGTAGATGTCAGGGCATTTCTTTTTCTTCCGTGTATTT
TCGCGTTGAAAATGTCCAAGAATAGCTGTAAGTCTGCTTGGTCGTGCCTT
TGCTAGTACTGTCGAGGCCACTAGAGCGACATGTGTAAGGTTAAAGTTAT
CAAGTAGGGGAAAGACAAGAGGACACATCGTTTCGATGCTCTTTTTGTTT
CAACAGTAAAAACCGTGTGAACCTCTCTGTTGGAGCCGACTTCAGTGGTC
ACAGTCGTGACCCAAACAAATTTCGTACCAAGTACATCAGAAATGGTTTG
CATCCACAAACATATGCTGCCGTCGAGTTGTGCTCGTAATATATTACACT
GGGTGGGGGCCATGGTTTTCTCTTCAGGCTTTGTTATTTTCTGCGGACAT
GAATGAGATCACCCCACGACGGTATCAGCACAACTCGAAACCAATGTGAG
GCCGGGAGAGCGTCGGTAGCTCGGGCAGGCGCATATTTACCCACCAGCTC
ATGTTCTTTGGTGGCCCAGAGTATTTAGCCTATATACTGCTGCATTATCA
AGAGCATGTTCTTTATATGTCAAACATATCTTGGAAGTTCAAGGGCTCTG
TTTTTTTTTGAAAGTCACGGACGTACGATAGATACCGTCCGAATGCAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig193:223961..232608+

>mRNA_P-littoralis_Contig193.58.2 ID=mRNA_P-littoralis_Contig193.58.2|Name=mRNA_P-littoralis_Contig193.58.2|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig193:223961..232608+ (Pylaiella littoralis U1_48)
ATGACTTGCTGCCCGTGTGCTAAGTCTTTTCCTAATGGAATGGAGAGAGT
GGAAGGGGACCCCACGTTCTACTGCGGCCCACATCGAGTAGGCAACACCG
TCCTCTTGTGCGGGAAGAAAGAGGGCCGATTTCCGCGTCACTGCATGGTG
GGCCCGAACTGGTTGTGCATGCTGGCGACGTACATGCTCATCCTGACGCC
AACGCTGGCGCTCATTGTCTTTGAGACTGCGGCGGAACACTGGGTGGCGA
CTTTCATCGTTTGTGTCACCGGGTCCGCGCTGCTCCTGGCGTTCTCGCTC
ACGGCTTGCAGCGATCCCGGAATCGTCTATCGTCCGGCGGTGAGAATACC
GTCGCCGGCCGGCAACAGTCCGGGCGCCGGTGCCTGTGGTGCTGCCGTGT
CCGATGCGGCCTCGGATCCCAGCACGATGGAAGGGGGGGGCGTTCTCTGC
GGCCGTTGTGACGTGAAGCGGCCGGTTGGTGCATTCCACTGTTCAGATTG
CAACGTCTGCGTCACGAAGTTCGATCACCACTGTCCTTGGACAGGAAAGT
GCATCGGAGAGAAAAATATTGTTTTCTTCTACCTTTTCCTGGGCTGCCTC
ATGGTGCACGTGGTCATCGTTGCCGTGCTTGCGCTCATGCCACACGTCAG
GCAATCCCTCTGA
back to top