mRNA_P-littoralis_Contig192.99.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 124 bits (312), Expect = 8.510e-31 Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQNEG-DVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
FS+FG NEVAPSQ++G DVD VEEEVS +I+RYKGVFMK DLPP++VL YW+KV KQMFPSLKYVAQQTFG QASAAQ+ER
Sbjct: 445 FSMFGCNEVAPSQSDGGDVDFVEEEVSGEIIRYKGVFMKPIDLPPSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIER 526
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JWR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR2_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.090e-28 Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 4 FSVFGRNEVAP-SQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
F+VFGRNEVAP S NE D+DLVE+ VSS+IMRYKGVFM+STDLPP++VL+YW V K FPSLKYVAQQT G QASA QVER
Sbjct: 376 FAVFGRNEVAPQSSNEEDLDLVEKGVSSEIMRYKGVFMRSTDLPPSKVLHYWKTVGKHSFPSLKYVAQQTLGSQASAPQVER 457
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 5.210e-20 Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQN-EGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
FS+FGRNEVAPSQ+ EGDVD VEEEVS +IMR +VL YW+KV +QM PSLKYVAQQTFG QASAAQ+ER
Sbjct: 565 FSMFGRNEVAPSQSDEGDVDFVEEEVSGEIMR--------------DVLTYWNKVGEQMLPSLKYVAQQTFGSQASAAQIER 632
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 5.650e-18 Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYWSKVEKQMFPSLKYVAQQTFGVQASAAQVER 246
F+ FGR+ V + D VE+EV+++IMRYKGVFM S DL PTEVL+YW+ + FP+LK+VAQQTFG Q SAA VER
Sbjct: 687 FAAFGRS-VGGVEESKQGDAVEQEVANEIMRYKGVFMTSNDLHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVER 766
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.440e-16 Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNYW 156
F+VFGR EVAP +EG++DLVEEEVSS+IMRYKGVF++STDL P+E LNYW
Sbjct: 315 FAVFGRKEVAPQSSEGNLDLVEEEVSSEIMRYKGVFIESTDLSPSEALNYW 365
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 3.390e-10 Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 2
Query: 242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
RDFS GL A NR+R++EYW+EMV+FLK NFQ IP Y DIPN+
Sbjct: 421 RDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNM 464
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 7.960e-9 Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQNE--GDVDLVEEEVSSKIMRYKGVFMKSTDLPPT 138
F+ FGRNEVAP NE DVDLVEEEV S+IMRYKGVFM+ D+ T
Sbjct: 146 FAAFGRNEVAPQTNEEDADVDLVEEEVVSEIMRYKGVFMRPKDVSTT 192
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.620e-8 Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 2
Query: 242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
RDFS C NRSR++ YW+EMVMFL NF+ IP +KDIP I
Sbjct: 64 RDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMI 107
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 4.700e-8 Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1
Query: 4 FSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFM 114
F+ FGRNEV P EGDVDLVE+EVSS+IMRYKGVFM
Sbjct: 350 FASFGRNEVDPQSREGDVDLVEKEVSSEIMRYKGVFM 386
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 7.670e-8 Identity = 26/44 (59.09%), Postives = 31/44 (70.45%), Query Frame = 2
Query: 242 RDFSHCGLFSAGNRSRVEEYWLEMVMFLKGNFQFIPDYKDIPNI 373
RDFS C NRSR++ YW+EMVMFL NF+ IP +KDIP I
Sbjct: 137 RDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMI 180 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig192.99.1 >prot_P-littoralis_Contig192.99.1 ID=prot_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp LFSVFGRNEVAPSQNEGDVDLVEEEVSSKIMRYKGVFMKSTDLPPTEVLNback to top mRNA from alignment at P-littoralis_Contig192:427260..427827- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig192.99.1 ID=mRNA_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=568bp|location=Sequence derived from alignment at P-littoralis_Contig192:427260..427827- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig192:427260..427827- >mRNA_P-littoralis_Contig192.99.1 ID=mRNA_P-littoralis_Contig192.99.1|Name=mRNA_P-littoralis_Contig192.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig192:427260..427827- (Pylaiella littoralis U1_48)back to top |