mRNA_P-littoralis_Contig192.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig192.53.1
Unique NamemRNA_P-littoralis_Contig192.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig192.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig192contigP-littoralis_Contig192:285488..287626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1125
Hectar predicted targeting categoryother localisation
Exons2
Cds size894
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.8411124-UTR-P-littoralis_Contig192:285487..2856811680789922.8411124-UTR-P-littoralis_Contig192:285487..285681Pylaiella littoralis U1_48UTRP-littoralis_Contig192 285488..285681 -
1680789922.8691633-UTR-P-littoralis_Contig192:287589..2876261680789922.8691633-UTR-P-littoralis_Contig192:287589..287626Pylaiella littoralis U1_48UTRP-littoralis_Contig192 287590..287626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789922.8500996-CDS-P-littoralis_Contig192:285681..2860261680789922.8500996-CDS-P-littoralis_Contig192:285681..286026Pylaiella littoralis U1_48CDSP-littoralis_Contig192 285682..286026 -
1680789922.8605614-CDS-P-littoralis_Contig192:287040..2875891680789922.8605614-CDS-P-littoralis_Contig192:287040..287589Pylaiella littoralis U1_48CDSP-littoralis_Contig192 287041..287589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig192.53.1prot_P-littoralis_Contig192.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig192 285682..287589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig192.53.1

>prot_P-littoralis_Contig192.53.1 ID=prot_P-littoralis_Contig192.53.1|Name=mRNA_P-littoralis_Contig192.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=298bp
MPSSSAQKKAKKRLKEQQQSTQLPKKGKQPERLSSQDGGGSAAGGAADMI
SNAQNEESHDQTHSSPKAHDQPTEETSDSNLYTLLSRNDDSEVEEDDEAG
SAAEQVIGEEGEVAVETCSAVSTTARPQSSTARDGVHPRFQPGGAIESYI
LEKFRQADEEGTSPPKHVMQMVTGSTHGPEIDQLSQRLSDVEQALAARST
PTTGQTGGQARTVSSTTTRTTQQRDNNRGRSQTRERSASKSRKETHNKSV
SFADKVKGTKECTYLACQNSERRFSHTIDECRIAASHKKAGLILKKA*
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mRNA from alignment at P-littoralis_Contig192:285488..287626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig192.53.1 ID=mRNA_P-littoralis_Contig192.53.1|Name=mRNA_P-littoralis_Contig192.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2139bp|location=Sequence derived from alignment at P-littoralis_Contig192:285488..287626- (Pylaiella littoralis U1_48)
CAGTGTCACGCACACCGAACAAGAGATAATTTGAAGCATGCCTTCTTCTT
CAGCTCAAAAGAAAGCGAAAAAGAGGCTGAAAGAACAGCAGCAGTCCACG
CAACTTCCCAAGAAAGGAAAGCAACCGGAACGCTTATCATCGCAAGATGG
AGGTGGTTCGGCTGCTGGGGGAGCCGCTGACATGATCAGCAACGCCCAGA
ATGAGGAGTCTCACGACCAGACTCACTCGTCACCGAAGGCTCACGACCAG
CCAACGGAGGAGACCAGCGACTCCAACCTGTACACTCTTCTTAGTCGGAA
CGATGACTCCGAAGTAGAAGAAGACGACGAGGCGGGGTCCGCTGCCGAAC
AGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGAGACGTGTAGCGCCGTC
TCGACGACCGCTCGCCCTCAATCGTCGACAGCTCGCGATGGCGTGCACCC
GCGCTTCCAACCTGGTGGAGCAATCGAGAGCTACATTCTGGAAAAGTTCC
GGCAAGCTGATGAGGAGGGGACCTCACCGCCGAAACATGTGATGCAAATG
GTGACTGGCTCCACTCATGGGCCGGAAATCGATCAGGTGAACCCGAGAAA
CCTTGCATCTAATCTAGCAGCCGAACCTTCCGAAGTACAAGTAGCCCAAC
CTCCATCCTCCTCCCCCTCCGCTCAACAAGAGCAAACCAGGCCAATGATA
GCGCCCACCATGCACACGATGCAACCCACTCTGCCCCAACAACAGCAGAC
TTCACCACAATCCATGCATCAACAACCCAACTTGTCACAGCAGCAATCAA
TCGGACAAACTACTCCCGTAAACATTGCTCCGATGCAGACCGTGCACTCT
CAAGTTGGCCAATCTCAGCATGGATACCCTCACCCCGCGCACCCAGACCG
CTTCACACTGAAAACGATTGACCTCCCAGCATCTCTCAAGCTCGAAGGAA
TAGCTTCAGAAGATGTACCTGAGTTGATGGCACTATACCGCGCCCACATT
CGCTTGCTCTCACCCGACACGACTTCGGATTCTACGATTGATCACCGCGC
TATCAAACACCTAGCGCTATTCGTACGAGGAGCAGCAGCCCAAAGTTTGA
GCTTAATACTGAGTTCGAATCTTGAGTGGAGACCAGAATCCACTCTTGCA
GCGATGCGTGCTCGAGGCGAACACATAATCGTTTCCCCTCCACAGACTTG
GCATGACTGGGTTACAGCATTTACGACTCTGTTCGCTCCGGCGAACCGCA
TCTCTCTCCTCGCTCGCGATGTCATGACTCTACAAGCCAAGCCGAACGAA
TCGGTTGACATGTACGGTCTCCGAGTATCACAAGCATATTCACGACTGCT
TGCTGAAGCTCAAAGGACCACGCCCGTTGGAGTTACTGCGCACGAACATG
CGTTCAACCAAGCGTTGATAGCATCTTTCGAAAACGGTCTCCAGCCCGCG
TTGCGTGTAGAAATGATAAGAGAGGATGCATCCCAATCTTTCATGGCTTC
CAAAGCTCGGGCACGAAAACATGAAGCAAACCAGCTGCGATCACCATCTC
AAATTCCAACGGCTATCTCCGCCCTGCACGCTGATCCCCGTGACGCCCAG
CTGAGCCAGCGCTTGTCAGACGTCGAACAAGCACTCGCGGCTCGTTCGAC
TCCTACCACCGGCCAAACCGGCGGACAAGCTCGCACGGTCAGCTCGACGA
CCACACGGACCACGCAGCAGCGCGACAACAACCGCGGAAGATCGCAGACC
CGCGAAAGATCGGCATCGAAGAGTCGTAAAGAGACACATAACAAATCAGT
CTCTTTTGCCGACAAGGTCAAGGGAACCAAGGAATGCACGTACTTGGCGT
GCCAGAATTCAGAGAGGCGCTTCTCGCACACGATAGATGAATGTCGTATT
GCGGCGAGCCACAAGAAGGCTGGTCTCATTTTGAAGAAAGCGTAGGGGTG
CCCGCGTCGGCACAGTTCCTCTGCCAACACGGGACAACATTTGTCACTTG
AGTCGGAAATTGATCTAGCAAGTCAAAGAGTCAAGGTAGACAAGAGGGAT
ACTACACACAAAACTAGTGTGGCGTCCCTGGCGGAAGTAAAGCAGCAGTG
CACAAATAATGCACGAGAGAAGCGTTCAGCAGAAGGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig192:285488..287626-

>mRNA_P-littoralis_Contig192.53.1 ID=mRNA_P-littoralis_Contig192.53.1|Name=mRNA_P-littoralis_Contig192.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=894bp|location=Sequence derived from alignment at P-littoralis_Contig192:285488..287626- (Pylaiella littoralis U1_48)
ATGCCTTCTTCTTCAGCTCAAAAGAAAGCGAAAAAGAGGCTGAAAGAACA
GCAGCAGTCCACGCAACTTCCCAAGAAAGGAAAGCAACCGGAACGCTTAT
CATCGCAAGATGGAGGTGGTTCGGCTGCTGGGGGAGCCGCTGACATGATC
AGCAACGCCCAGAATGAGGAGTCTCACGACCAGACTCACTCGTCACCGAA
GGCTCACGACCAGCCAACGGAGGAGACCAGCGACTCCAACCTGTACACTC
TTCTTAGTCGGAACGATGACTCCGAAGTAGAAGAAGACGACGAGGCGGGG
TCCGCTGCCGAACAGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGAGAC
GTGTAGCGCCGTCTCGACGACCGCTCGCCCTCAATCGTCGACAGCTCGCG
ATGGCGTGCACCCGCGCTTCCAACCTGGTGGAGCAATCGAGAGCTACATT
CTGGAAAAGTTCCGGCAAGCTGATGAGGAGGGGACCTCACCGCCGAAACA
TGTGATGCAAATGGTGACTGGCTCCACTCATGGGCCGGAAATCGATCAGC
TGAGCCAGCGCTTGTCAGACGTCGAACAAGCACTCGCGGCTCGTTCGACT
CCTACCACCGGCCAAACCGGCGGACAAGCTCGCACGGTCAGCTCGACGAC
CACACGGACCACGCAGCAGCGCGACAACAACCGCGGAAGATCGCAGACCC
GCGAAAGATCGGCATCGAAGAGTCGTAAAGAGACACATAACAAATCAGTC
TCTTTTGCCGACAAGGTCAAGGGAACCAAGGAATGCACGTACTTGGCGTG
CCAGAATTCAGAGAGGCGCTTCTCGCACACGATAGATGAATGTCGTATTG
CGGCGAGCCACAAGAAGGCTGGTCTCATTTTGAAGAAAGCGTAG
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