mRNA_P-littoralis_Contig191.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.41.1
Unique NamemRNA_P-littoralis_Contig191.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig191.41.1 vs. uniprot
Match: A0A6H5KJV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV7_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 2.830e-134
Identity = 202/269 (75.09%), Postives = 222/269 (82.53%), Query Frame = 1 
Query: 1453 RWRRFVGLGDDVCGGDGKVWRPLLVQLDHPRGRTPPWLQFRGRWGGTQSIACEGFWKGQGEAPRRCSAEAKYRSLLEEGLVPDRGVRLGPSRRMLHGNADRGVWLERHRQTENRVPFANMWTRVPGLSSSRPRDQDSPRKEILIARINWLADWGFLQDAGGGSTDADGWSYYGSQSRYADTGMAGRPKDEGLLVHRSRGRVWFRVAATPGVAKAVEEARRRDGGRNPRRALALAALDVAGRGEVVTPESLLQTLRDGVQGHGAGSEVGA 2259
            +WRRFVGLGDD+CGGDGKVWRP  VQLDHPRG  PPWLQFRGR+GGT+ I  E FW+  GE PRRCSAEAKYRS+LEEGLVPDRGVRLGPSRRMLHGN DRGVWLERHRQTE RVPF N WT VPGLSSSRPRDQD P+      R+ WLA WGFL+D  GGSTD+ GWSY+ SQ+ YADTG+AG PK++G+L HRSRGRVWFRVAATP VA+ VEEARRRD GR+P RA ALAALDVAG GE VT  SLL+TL DGV+G  A S  GA
Sbjct:   13 KWRRFVGLGDDICGGDGKVWRPHAVQLDHPRGSKPPWLQFRGRYGGTRCIMSEAFWRCGGEPPRRCSAEAKYRSVLEEGLVPDRGVRLGPSRRMLHGNGDRGVWLERHRQTETRVPFLNTWTGVPGLSSSRPRDQDPPK---TTGRV-WLAGWGFLRDLDGGSTDSRGWSYHSSQADYADTGIAGAPKNKGILAHRSRGRVWFRVAATPEVAREVEEARRRDNGRHPPRAFALAALDVAGHGETVTAASLLRTLGDGVRG--ASSNTGA 275
[Close]
BLAST of mRNA_P-littoralis_Contig191.41.1 vs. uniprot
Match: A0A6H5KJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP6_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 5.710e-89
Identity = 177/263 (67.30%), Postives = 195/263 (74.14%), Query Frame = 1 
Query:  322 MDPEDEDLKARLLASFCPVLRFDAAEKHYPVRAELFVSSSLLLRRPKNPGEVRAEMRRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGDGALADEQSDQEKMQQLQLQACGECGQRQGWKTPSKGKWTLVDLPPGAQSWSTSTLLDEQRRDP-LHEFRLEPHCCIWDGQEGDLSAVPCYAFADLLDPSTIAPFIRIAGLGPVYELKYAFLYGYNGTTFAIPGTSVGVHTGDLEHVTVRVDARRMM 1107
            MD    +LKA+LLA F PV++FDA EKHYPV  E F+SSSLLLRRPK PG +   M +                        XXXXXXXXXXXXXXXXXXXXXX   G+ A +Q  QE+M Q    ACGECGQRQGW+ PSKG W LV LP GAQSWST+TLL+ Q RD  L+EFRLEPH C+W GQE DLS VPCYAFAD LDPS +APFIR AG+GPVYELKYAFLYGYNGTTFAIPGTSVGVHTGDLEHVT+RVDARRMM
Sbjct:    1 MDTRKGELKAQLLAYFSPVVKFDAGEKHYPVSVETFISSSLLLRRPKTPGGIEQTMEQ-------------------INLDDXXXXXXXXXXXXXXXXXXXXXXXXXGSAAHDQHQQERMHQ----ACGECGQRQGWRFPSKGGWVLVALPLGAQSWSTATLLEAQLRDKGLNEFRLEPHSCVWGGQERDLSKVPCYAFADPLDPSAVAPFIRRAGVGPVYELKYAFLYGYNGTTFAIPGTSVGVHTGDLEHVTIRVDARRMM 240
[Close]
BLAST of mRNA_P-littoralis_Contig191.41.1 vs. uniprot
Match: D7G814_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G814_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 3.650e-77
Identity = 116/147 (78.91%), Postives = 124/147 (84.35%), Query Frame = 1 
Query: 1444 MPK-----RWRRFVGLGDDVCGGDGKVWRPLLVQLDHPRGRTPPWLQFRGRWGGTQSIACEGFWKGQGEAPRRCSAEAKYRSLLEEGLVPDRGVRLGPSRRMLHGNADRGVWLERHRQTENRVPFANMWTRVPGLSSSRPRDQDSPR 1869
            MPK     +WRRFVGLGDD+CGGDGKVWRP  VQLDHPRG  PPWL+FRGR+GGT+ I  E FW+  GE PRRCSAEAKYRS+LEEGLVPDRGVRLGPSRRMLHGN DRGVWLERHRQTE RVPF N WT VPGL SSRPRDQD P+
Sbjct:    1 MPKPGGGVKWRRFVGLGDDICGGDGKVWRPHAVQLDHPRGSEPPWLRFRGRYGGTRCITSEAFWRCGGEPPRRCSAEAKYRSVLEEGLVPDRGVRLGPSRRMLHGNGDRGVWLERHRQTETRVPFLNTWTGVPGLGSSRPRDQDPPK 147
[Close]
BLAST of mRNA_P-littoralis_Contig191.41.1 vs. uniprot
Match: A0A836C7Q3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.220e-32
Identity = 125/429 (29.14%), Postives = 174/429 (40.56%), Query Frame = 1 
Query:  745 KGK-WTLVDLP--PGAQSWSTSTLLDEQRRDPLHEFRLEPHCCIWDGQE--------------------------------------------------GDLSAVPCYAFADLLDPSTIAPFIRIAGLGPVYELKYAFLYGYNGTTFAIPGT-------SVGVHTGDLEHVTVRVDARRMMILE---------------VFFAAHGTGEGKWITSKDFYRQVEAWEAATHPGVAAEAPESTREFLEMEEASESPLVENAG------DAGDQPESGAAGTKARGGSDSSDFGAAVGGCGERFVIYPARNGHASYHMPKRWRRFV------GLGDDVCGGDGKVWRPLLVQLDHPRGRTPPWLQFRGRWGGTQSIACEGFWKGQGEAPRRCSAEAK--YRSLLEEGLVPDRGVRLGPSRRMLH-GNADRGV 1761
            KGK W +V+ P  PG Q W+   LL+EQ R P     L P    W GQ                                                         P Y +A  L P+ +AP +R A LG V +LKYA LY YNG+TF +P          +G H GDLEHV VRVDA    +L                ++++ H TGEGK++ S D+   V A    +                E++  S+S  + +        D G +P                             + Y A   HA+Y  P+ WRRF       G GDD+C   G  W P +V +D+P  R PPWL+F G++G + +   + +W+ Q E  R+ +      Y S++EEGLVP+R +RLG +R  L  G    GV
Sbjct:   49 KGKDWAVVEPPGPPGTQ-WTVEALLEEQARAPRTPAMLCPRRPYWGGQSVAAATGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPPVYGYAKQLPPTAVAPCLRGA-LGRVADLKYAMLYTYNGSTFRVPPLPPLRPHGGIGSHLGDLEHVLVRVDADSGRVLXXXXXXXXXXXXXXXXMYYSCHSTGEGKFVAS-DYLPSVAA-ALNSRXXXXXXXXXXXXXXXELDPDSDSAQLPSTAPRLQFFDNGVRP-----------------------------ITYAAAGSHANYPEPRSWRRFAIVSWLPGFGDDLCSDRGAEWHPDVVVIDNPVCRYPPWLRFTGQYGHSANFRQQTWWRVQSEHARQIAPTPANYYHSVVEEGLVPNRQLRLGLTRANLQLGRVAAGV 444
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJV7_9PHAE2.830e-13475.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP6_9PHAE5.710e-8967.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G814_ECTSI3.650e-7778.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C7Q3_9STRA7.220e-3229.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:160267..170974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3055.EDP05646
PFAMsVps62
Model size2295
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons13
Evalue6.5e-07
EggNOG OGs2CMJB@1|root,2QQHV@2759|Eukaryota,37I1T@33090|Viridiplantae,34M0Y@3041|Chlorophyta
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009780.1
DescriptionPfam:DUF946
Cds size1974
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789918.9394486-CDS-P-littoralis_Contig191:160266..1604611680789918.9394486-CDS-P-littoralis_Contig191:160266..160461Pylaiella littoralis U1_48CDSP-littoralis_Contig191 160267..160461 -
1680789918.9538858-CDS-P-littoralis_Contig191:161618..1617641680789918.9538858-CDS-P-littoralis_Contig191:161618..161764Pylaiella littoralis U1_48CDSP-littoralis_Contig191 161619..161764 -
1680789918.9665523-CDS-P-littoralis_Contig191:162357..1624151680789918.9665523-CDS-P-littoralis_Contig191:162357..162415Pylaiella littoralis U1_48CDSP-littoralis_Contig191 162358..162415 -
1680789918.9782653-CDS-P-littoralis_Contig191:163354..1634391680789918.9782653-CDS-P-littoralis_Contig191:163354..163439Pylaiella littoralis U1_48CDSP-littoralis_Contig191 163355..163439 -
1680789918.9926913-CDS-P-littoralis_Contig191:163988..1640921680789918.9926913-CDS-P-littoralis_Contig191:163988..164092Pylaiella littoralis U1_48CDSP-littoralis_Contig191 163989..164092 -
1680789919.0051312-CDS-P-littoralis_Contig191:164713..1647611680789919.0051312-CDS-P-littoralis_Contig191:164713..164761Pylaiella littoralis U1_48CDSP-littoralis_Contig191 164714..164761 -
1680789919.0184824-CDS-P-littoralis_Contig191:165540..1657451680789919.0184824-CDS-P-littoralis_Contig191:165540..165745Pylaiella littoralis U1_48CDSP-littoralis_Contig191 165541..165745 -
1680789919.0279434-CDS-P-littoralis_Contig191:166636..1669081680789919.0279434-CDS-P-littoralis_Contig191:166636..166908Pylaiella littoralis U1_48CDSP-littoralis_Contig191 166637..166908 -
1680789919.0376592-CDS-P-littoralis_Contig191:167472..1675481680789919.0376592-CDS-P-littoralis_Contig191:167472..167548Pylaiella littoralis U1_48CDSP-littoralis_Contig191 167473..167548 -
1680789919.0470452-CDS-P-littoralis_Contig191:168347..1684891680789919.0470452-CDS-P-littoralis_Contig191:168347..168489Pylaiella littoralis U1_48CDSP-littoralis_Contig191 168348..168489 -
1680789919.0565534-CDS-P-littoralis_Contig191:169101..1692201680789919.0565534-CDS-P-littoralis_Contig191:169101..169220Pylaiella littoralis U1_48CDSP-littoralis_Contig191 169102..169220 -
1680789919.0671303-CDS-P-littoralis_Contig191:169525..1700221680789919.0671303-CDS-P-littoralis_Contig191:169525..170022Pylaiella littoralis U1_48CDSP-littoralis_Contig191 169526..170022 -
1680789919.0803943-CDS-P-littoralis_Contig191:170626..1706531680789919.0803943-CDS-P-littoralis_Contig191:170626..170653Pylaiella littoralis U1_48CDSP-littoralis_Contig191 170627..170653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789919.0926936-UTR-P-littoralis_Contig191:170653..1709741680789919.0926936-UTR-P-littoralis_Contig191:170653..170974Pylaiella littoralis U1_48UTRP-littoralis_Contig191 170654..170974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.41.1prot_P-littoralis_Contig191.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 160267..170653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.41.1

>prot_P-littoralis_Contig191.41.1 ID=prot_P-littoralis_Contig191.41.1|Name=mRNA_P-littoralis_Contig191.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=658bp
MDPEDEDLKARLLASFCPVLRFDAAEKHYPVRAELFVSSSLLLRRPKNPG
EVRAEMRRQRRREAEEGNKTEKADKGNENDELHRTVSAGGSGGDGDGADG
GDDSSGDGALADEQSDQEKMQQLQLQACGECGQRQGWKTPSKGKWTLVDL
PPGAQSWSTSTLLDEQRRDPLHEFRLEPHCCIWDGQEGDLSAVPCYAFAD
LLDPSTIAPFIRIAGLGPVYELKYAFLYGYNGTTFAIPGTSVGVHTGDLE
HVTVRVDARRMMILEVFFAAHGTGEGKWITSKDFYRQVEAWEAATHPGVA
AEAPESTREFLEMEEASESPLVENAGDAGDQPESGAAGTKARGGSDSSDF
GAAVGGCGERFVIYPARNGHASYHMPKRWRRFVGLGDDVCGGDGKVWRPL
LVQLDHPRGRTPPWLQFRGRWGGTQSIACEGFWKGQGEAPRRCSAEAKYR
SLLEEGLVPDRGVRLGPSRRMLHGNADRGVWLERHRQTENRVPFANMWTR
VPGLSSSRPRDQDSPRKEILIARINWLADWGFLQDAGGGSTDADGWSYYG
SQSRYADTGMAGRPKDEGLLVHRSRGRVWFRVAATPGVAKAVEEARRRDG
GRNPRRALALAALDVAGRGEVVTPESLLQTLRDGVQGHGAGSEVGASSVG
QEAASRST
back to top

mRNA from alignment at P-littoralis_Contig191:160267..170974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.41.1 ID=mRNA_P-littoralis_Contig191.41.1|Name=mRNA_P-littoralis_Contig191.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10708bp|location=Sequence derived from alignment at P-littoralis_Contig191:160267..170974- (Pylaiella littoralis U1_48)
AGGCGCGCCGCGACAACAAATTCAGCTACACAGCTCTCTCACCTTCATGG
CGGAATCTACCGGTAAATGAAAGCATGTCTGAGCAGGATCGGGCGAATGG
GTACAGCGTATACTGGTGTGTAATTTAGAACCCAGGTTCGAACCACAGCC
CAGAAATGCAAAATGCAAACGGCAAACGGTGAAAAGTGGACCAGAACCAA
AATAGGTTACCCTCGGGAAACGTTCGCGGCGGGACCTGAGAGGCGACACA
GACAAGGAGAGAGGGAGACGAATTGCGAATAGCGCACGAAACCTAGAGAA
CTCACCTTTCGGAGGTACAGCATGGACCCCGAAGACGAAGACCTGAAGGT
ATCGCTTGCCTGCGCTGGGATGACTATTGTGTGTCCCTACTTTGGAAGGA
AATACTGCTGTTGTGTGACGTTTTCGAGAACATATGTACGACCAGAAAAT
CAGAGCGCCGAGCGGTGTACTTGATTCAACAGCCGAAACGAATCGAGGGG
GGGCCGTCAGGGATTGGGACCCTCAAGTTTACGTAGAGTTCGCCCTTTGA
ATCAAGTACCCTCTCAGGAAGACCAGTCGGGGTACGCTCTGCAGCATCAT
ATTCTGATCTTGCGCTCGAGAGCACCGGAGACACAGGAAGTAGTGCTGCG
CGGAAAAGGCGGAGTTTCTTTTACAGCAGTACTGGTAATTTACACCGGCG
TGCTGGATTGTATTGCCTGCTGTATGCCTGAATTTTTCCCAGCGGGTCCA
GTCTGTCTGAGTGGGTGTCGAAAGCTCTTGCAACCGTAGCCCTGACCCAT
GAGGCTAGCGTATCCATAGCTGTAGGTACCTGTAGGCTGGGTAGCATGGT
GTATACGGACGAGAGAGCAGTTAGTTGTCCCCGAGTCTGTTCTGGCATAT
CTGCTTCGGCATACGAACAAGAAACCCCAACCGCCATCCGAACAATCCAC
AGGCCCGTCTTCTAGCTTCCTTCTGCCCGGTGCTGCGGTTCGATGCCGCC
GAGAAGCATTACCCAGTTCGCGCCGAGCTGTTCGTTTCTTCCTCGCTGCT
ACTGCGAAGACCCAAGAACCCCGGAGAGGTGCGGGCAGAGATGAGGCGGC
AGAGGAGGAGAGAGGCCGAAGAAGGGAACAAGACGGAAAAGGCCGACAAA
GGGAACGAAAACGATGAGCTTCATCGCACCGTCTCTGCGGGAGGAAGCGG
TGGCGATGGTGATGGTGCTGACGGTGGCGATGACAGTAGTGGTGATGGGG
CTCTTGCTGACGAGCAAAGCGATCAAGAGAAAATGCAGCAACTTCAACTC
CAGGCTTGCGGAGAGTGCGGCCAGAGGCAAGGCTGGAAGACCCCCTCAAA
GGGGAAATGGACGTTGGTAGATCTCCCTCCAGGTGCCCAAAGCTGGAGCA
CCTCGACGTTGCTAGACGAACAACGGCGAGACCCCCTCCATGAGTTCAGG
TGCGAGGGGTAGCCTTCTTCTGCAGTTGTTGGAACCGCCCGCTTGCTGTA
AATGTTATGTTCTCTGCTGTTGTTTCTGCTCTGAGGTACGACTCTAGAGT
CTTTATTTCCTGTGGGTTTTTGCGATTCGGCACGACCGCTCCGTCCTTCC
AGGCAAATGAACAGGCGGTGTCAACCGCGGGAGGCTACCTAATTGAACAG
TCAACCGAAATCTAAGGGGTGCTGGGTACCTCTGGCAGGCAGCCATCTGA
AAAACCTCTCCATCTCCCTCTTTGCTGTCTTGTGCACCGGGCGGTGTCCA
AAAGGTTGGAACCACACTGCTGCATTTGGGACGGCCAGGAAGGCGACTTG
TCGGCGGTTCCCTGTTACGCCTTTGCAGATTTGCTCGACCCGTCCACGAT
CGCACCGTTCATCAGGATAGCGGGTGAGGTTTGGCGTAGCAGAAGGAACG
TAATGCTTCAATGCTGTACACCGAAGCAGGCTGAGTGATGATGAATCGAC
GGTCGAAGGGTCGTTGTACGAAGCGGGCGTGAAACGCGAGCGGGATTTCG
AACAATCGAACATAGTCGTATATCAGACAAATCTCCCAACAATGTCCCCA
ATGCCCATTTTGGTTGGTTGTCCGAAAAATTGCCAGATCTCTTCCAATCC
GTCACCGCCGTGTTTGTACGTGAACCAAATGCGGTTCGCAGGTCATGAAC
CAAATGCGGTTCGCAGGTCATGTTTTTTTTTTTTTTTTTCTCCCGACAGT
GCTTGTTCTTGGTCACTGCTGTTTTGCGATAATGGTTGTCCCGATCAAAA
AGTCCCTATCTGTCTTTCCTCCAGATAGTCCAACTTCCGTTGAATGAAAC
AAGATGCCTCCATCATTTCGATTTGTCCTCTCAACCCCTCCCCCCGGCCT
AGACACTTCGCGTTGACCGCCCTACGTCTGTTGTACTGTATAATAAAATG
TGTGTAGTACATGTACACATATGCCTTTCATTACGCCACAACCCTGCCGT
GCTTGTTTCTCTCTCCTATGTATGCACCCACGAAGGGCTGGGGCCGGTGT
ACGAGCTCAAGTACGCCTTCTTGTACGGGTACAACGGGACGACGTTCGCC
ATCCCAGGCACATCGGTCGGGGTGCACACCGGCGACCTCGAGCACGTCAC
CGTCCGCGTCGACGCCCGGAGAATGATGTGGGTTTCAGAATGGCGGTGAC
GTTGTTGCATCATTACCGACGACCACGGGGGTCGGGCGAGAGTTGTGTTG
GATTTTTTTTTTTTGTTGGCGGTGTGTGGATGACGGCTACGTACGTATGA
CATCACAACATTTGTGCGCACGTACAAAGGGGTACGGAGATACAGATGTA
TGCTGAGGGCAGCCAGAGTTTACGAAGTGTTCGTGTCCTTTTCTTCTGGT
CTGGTCGGACAAAAGGCCGGTGATTCGGACATTCCAAGGATCAACTGTCA
GAAACCCCTTTAAGCCTTCCGAGGGTGTTGCGTATTGTGTTTGTTCGTCT
GTTTGTGTTTTGCCATCCCATATGTTCTGGACGCCAGTCTGCACCTTGCG
TGCGTGCTGACGTCGTTCGAAGCACCTGCGCTGCTGTACAGCATTGGTGT
AAAACAACTTGGGTGGTATGATATGATATGTTTTTTTAGTCGTATGTTGG
CACTTTTTTAATTTTATCAATGAGGGCGAGAGACATTGAGTGCCCGCAGT
TTCTCTTCGTAGGGTTAGAGATTTAGCACGCACAGAGGTGCCCCACCAAA
AGTCCGGCGGCGTTCTTTCCAATCAGGGAAGGGCATCCTCTCGTTGTTTT
TGGCGCTTAACGATACAGCATAACCCCTGCCCCTGTCTGCGCTGTTGCTG
TGTGGAACAACCTCCCCCGGCTCTGCCCGTTCAACGTCTCTCCCTCGGCA
ATTGTGTTTTTTTAACCATACGATGCGCGCGGGGACCCCACAACGACGCG
TGCCGGGGTTTCTCACAAACCTCCAGGATACTGGAGGTCTTCTTTGCTGC
GCATGGCACCGGCGAGGGCAAGTGGATCACGTCCAAGGATTTTTATCGAC
AGGTCAGCAGGCCGTGTGTGTAGCTCGCCTCCTTTCTTTGCGTATGCGTC
GATTCTCTTGTCTCCCTCAAGCATTCAGCCCCCGTTTCCTTGTTTCTCTG
GTCATTTCATCTTTAGGTCTACTGGTCTCTCCTTTGTGCCGAGGTTTCTT
TTTTGTGCATGTACCACAAAAAGTCCCGAAACTACCGGTAGATCCCGTTA
GGGCTTTGTTGGGTCCATGCATCAAAGCACCGCGTCTCTTGACAGAGCAA
GCATTGGCGGTTGTGTTGTATGCCCGTCTACCTGCAGCACCGCATCCCGG
CAATGCGCTGTAGATGTGCGGCCTTCTCTCAGTACCTTTTTCCATCGACG
AGGGTTCCAGCTGAGGTTACGGATAGGACTACCGCACGATAACACTGACA
CTTTGCTTACGAGGCGTCTTGGCGACGAAAGCAGTGCAGCAGTACGCAGC
CTTTCGTATGCAGTGGCGGCAGTGGGAAGGCAACCCCGTCCCTGTGATCA
CGGGTTCAAGAGATCGGTCCAACAACGATCAGAAAAACAAAAATGTCGAT
AAATCCGACGACGCAGGTAGAAGCCTGGGAGGCAGCGACGCATCCAGGGG
TTGCTGCAGAGGCGCCAGAATCAACCCGGGAGTTCCTTGAGATGGAAGAA
GCATCAGAATCGCCTCTGGTGGAGAATGCTGGTGATGCTGGCGACCAGCC
TGAGAGTGGGGCGGCTGGCACGAAAGCACGGGGGGGCAGTGATAGCAGCG
ATTTCGGTGCCGCCGTCGGCGGTTGTGGCGAGCGATTTGTGATTTATCCG
GCTCGAAACGGCCACGCGAGTTACCACATGCCAAAGAGGTACGCACGCAC
AGCCAGAAGTACAGCAGTTCGAACGAACGTTGAATCACAACGAAAGAGGT
ACGCATGTAACGAAGAAAATAGCTCGAGCGAACGTTGATTTACAACGAAA
GAGGTACGTTTGTTCCGGTGCACTTCGAACGAATGTTGAAAAACAACGAA
AGAGGTACGTTTGTTCCGGTGCACTTCGGACGAATGCCGAAATACAACGA
AAGAGGTACGTTTGTTCCGGTGCACTTCGGACGAATGCTGAAATACGACG
AAAGAGGTACGTTTGTTCCAGTGCCCCCGCACAAAAGAGCAACGGGTATG
CTCATGAGATAATGTTGATACATGCAAACAGCCCAAAACCTTGGTGAAAA
GGTGGGACTGGATGGACATGACCACTACCTACACCATTGTTTGCCTGACT
GTCGCGATTCGTCTCCCACACACGCGGGGTGGTCTGAATCTCGGCGAAAC
ATTTTCGACTTTAATGTTGTTGCCACTTGCGGCCAATGCTGTCCCGACAT
TCATGTCCCACGTCGTAGTTGAATCCCAGCCCCATATTTACGACCACGGT
GTTGTCATTGTCCTTCTTCCGTCATTCGTGCCCCACGTTCAATAACATCC
CTGCTTAGCATTTTCGTCTCACAGTTGTTAATGTTGTTGTTGATGTTCTT
GTTGTTGTTGGTGGTGGTGGTGGTGGTGCTGCTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTCGTTGTTGTTGTTCTCG
TTGTTCTCGTTGTTGTTCTCTTGTTTTTGTTCTTGTTTTCTGTCGCTGCC
GCTGTGCTGCTGTTGCTTCCATCATTCTAACCCTTGGAGTAATTCCAGTC
CTTGGTACTGTTATTCTCCGTGCGGCAAGGTGGCGGCGATTCGTCGGCCT
AGGCGACGACGTCTGCGGCGGCGACGGGAAGGTATGGCGACCTTTGCTAG
TCCAGCTGGACCATCCTCGAGGGAGAACGCCTCCTTGGTTGCAGTTCCGA
GGGCGGTGGGGGGGCACTCAATCTATCGCGTGCGAGGGGTTTTGGAAGGG
CCAGGGGGAAGCGCCCCGGCGTTGCAGCGCGGAGGTGGGTGGCGATATGT
AGCGCTGACATCGATGATGATGACGATGATGATGATGATGATGGTGATGG
TGATGGTGATGATGAGGATGATGATCATGACGATCATGATGATAATGATG
ATGATGATGATGAGTATCAGCTGGGTGATCATGCTGATGAGGGGATGTCA
TTTTTTTTGCATCTTTCGGGCGGGGGTTAGTAGCGCTAACATCGATAGCG
ATGATGATGACGATGATGATGGTGTTAATGATATTGATGACGATCATTAT
GAGGATGGTGACGGTGACCATGGAAATCAATTGGTCACCAAAGAAATCGG
TCAGTGTGTTTGTGTAAGGGGTGTTTAGGGCGGTTCAAAGGTTGGAGGGT
AGAGGCAGCGAACGATGGCTGCGAGGCGTCGGCTGCCGTGGGCGATGCTT
TCAACGGCAGGTACACACGCGACAGCGGTGCCACGTTTGTCGTCTACAGT
ACATGGACGATATTGCGATGGCGAAACTGAATGCATGGTGTTTGTTGTGT
GTGACTTACGTCCCATTTATTCTAGGCACCAGTCTACACCTTCCGGTGTG
AAGTGGACGCACCAGCCGGGGTCACACATACCGGGGCTGGTGGAAAGGAA
AAAAGAAAAAGCGCGTGTCATGTACCATTTTCCTCTCGGGGGGGCGGGGG
AAGCTTGAACGTAAGTGTACGCCCCTTTTCAGGCCTCTCTCTCTCCCGAC
ATGATGACTCAAAATATTTGTTTGATGCTTTCCAACCGCCGGCTTTTGTT
GCTCTTTCTTCAGGCGAAATACCGGAGCTTGTTGGAGGAAGGGCTGGTGC
CAGACCGAGGGGTAAGTGATTAGGCCACCGTTTCGCCCGCTGCAGTACTG
TAGGGGTCACCCTCAGCAGCTGGTTCTCCTGGATGTAGACCTCCGGTCGG
AAAATACAAGCCTAAGGTTGCTGATTTTTCACACGTCTCCAAAAGCTAGG
TACCCCCCCATGGGGGTTGGCAGTTCAGCTCCCGAAACTATCAGGGGGGC
CAGTAATCACGGGGCATGTCAGAGGTACCAAAAAAGAACGGCAAAGAAGG
CTACCCCTCCGATATGGACGTAACATGCGTTATTCGTTCGCAACAATGTG
CACTAAGCCAGCACAAAACACGCCCCGAAACGGGCCGACCCCGACAAGGG
AGTGTGTGCCTCGCGTGTCGACTTTGCGGCGCGTCTACCATACCTTTTTT
TTCGTGTGCCGGAAGAATCGAACCTTGGACTTGAGATGTCCTACTGCTGT
ACCTGCGTCGGGCTCAGGCGCTCACTGAACCTACCTCTCCCTGCGTTTGG
CTCAAGCGCTCACTTCGTGGCCGAGTGGGCTCACTTCGTCGCCCGCTGCC
ACAATGTTTTACTCGAAAAAAAAACAATTTCACGTGTCATCAGTTCACAA
ACTCCAGCGTTGCTTTTACCGGTGCCGCCCAGGTGAGGCTTGGCCCTTCC
CGAAGGATGCTGCACGGTAATGCTGACAGGGGTGTGTGGCTGGAGCGGCA
CCGGCAGACAGAGAATCGAGTGCCGTTCGCCAACATGTAAGTAAGGGTGT
TTATTTTGTGGTACACGAACACGCCCGTTACAAACGACCTGCGAGAGGAA
TAACCAGGGTGCCCCGCCACCGTGTTGCCGTCGAGATGGAACGGGGCCGT
GGGAGGGTGTTCTTTAAGGGAACGATTTCTGCCGTTGTTCGGGTTCACGG
AAGTGGAGATTCGACTGACTCTCTCCCGTCTCCCAGGCATGCTCAGAGCG
GTCAGGTCAATTAGCGGGCGCTGCGTTGTATGGGGAGGGGGGAAACTCGT
CTCGTCACTTGAAACAACCACAGCAGTACATAGCATCACTTGCTTTGAAG
TCTCCAGGACAAGCCGTTCACCACACGAAAGGGGGCGGGGTTGTCTGTGT
CGCGGAGAAGTTTGCTTGACCCTACGACATCGCCAAGCGGCAGCCGTAGT
CGGCGTTGGCTTGGCATTCGCTGTACCAGTATGTGGATACCTGATGCGGT
CCAACCTCACGCACAGCCACTTCCTCCTCCTCCTCCTTTTGTCGGTTGGT
TGGTTGACTCTCAAAACACGACCTGCTGCATGCAGGTGGACCCGCGTGCC
CGGGCTAAGCTCGTCAAGACCTAGAGATCAAGACTCTCCCAGGAAAGAAA
TATTGATCGCGAGAATAAACGTCGTGGGTATTTGCGGAAGCAATTTCGTC
CAATGGCAAAAACGATAACCCCTTCCTTTGTTTGTATGTCTGACATAACG
TTTTTGTCGCAACATTAGTCAAAAAATTATTTGATGCCAATGCTTGTCGA
GCCCTCATACAGCAGCATAACAATAGTTGGCACAATTGTACAGTACGTGG
TGGTGTGTGCGTGCGTGTGTTTGCGGGAGTAATTGGTAATTAGTACGGTA
AAACACCGCGGTGCAGCCAATGGAAAATGCCAGCCTACGTAATGTTCTCG
GCGGCAGGCACACTTCATGAGCGTCGTTCCTCTCTTCGGGTTGTGTCACG
GTTTTCCCACGCATTGGAGGGCGTCTACAGTAGCCTTAAGTCCTTCTCTG
GGCTGTTTCACTGGTTTCCCACGCCTGGGAAGGCGTCTACATAAGCGTTG
TTTTTTGCTCTAGGCTGTGTCGTGGATTTCCCACGCCTGGGAAGGCGTCT
ACATAACCGTTGGTTTTTGCTCTAGTCTGTGTCACTGGTTTCCCACGCCT
GGAAAGGCGTCTACATAACCGTTGTTTTTTTATCTAGGCTGTGTCGTGGA
TTTCCCACGCCTGGGAAGGCGTCTATAAAACCGTTGTTTTGTGCTCTAGG
CTGTGTCACCGGTTTCCCACGCCTGGGAAGGCGTCTGAGGCCTTTCGGGG
GACGCACTGCTGTGGCGGAGTATGACGCTTCAGAAAGTGTGCTCCGTACA
TGTATTCGCCTTGTGGTCATGCCAGAGAACCAAAATCCCAACCTCGAGCC
TGCAAACACAAACAGGCGCGCACAACCGCTGTGCATTTTGCCACGTGGTG
GATGTATCCGTGCGTTCGCTCGTCACCTACCACCACATCTCTGCTTCAGC
TAATACACGCCGGCTTGGGCAACCACAACATGCCTGCACGCAGGTCCGCT
GGTCGAGAGTGGCTGGCCGATTGGGGTTTCCTTCAAGACGCTGGAGGAGG
ATCGACGGATGCCGACGGTAAATAAATAAATTTAGCATCACACATGTCGT
CTTCTGAACGACATTCCGAGCTTGATTACCTTAGAGCAGCATGATAAACA
AGGCCGATATACCCACCTACACATGGGTGGCTAAATGTCGCCATTTTGGG
TCGCCACTTAGTAATTTTTCGCTTGGATTTCCACTTGACTCCCATGAGCT
AAACTTTTACCTCGCTAACCGCTCATCTTTCAAAACGTACTCATTGAGCA
AGTGGACGCTTTCGCCGAGAAAACATGGCGACGCGTTCACTTGCTTTCAT
AGAGAGCTGCTGTTTTGAAAAAATTCTTCCATGATGATCTTTCACAAGGG
GGTAAAAGGGCGTTCAAAGCCACGAGAACACCCCGAGAGGAGATCGACGG
ACGCCGAGAGCACCGAAATAAAATAAAAATCGGTATCAAGTACAAGCAAG
ATGTACATTTTGTGGGATTCCTGCATAGACGGGCGGCACAAGTCGAGTCT
ACCTGGCGGGCGGCTGCATGAGGCCCCTCCCTCCGAAAGCACGTGCTGCA
TTCTCATCCTCGAAGTACATTTTTACTACTGTACTGCTGTACGTGTGTTT
TTTTGGTCAGGCTGGTCGTACTACGGCAGCCAGTCAAGATACGCCGACAC
GGGCATGGCGGGAAGACCGAAAGACGAGGGTCTCCTCGTCCACCGCTCCC
GGGGGAGAGTGTGGTTCCGAGTTGCTGCCACGCCGGGGGTTGCGAAGGCG
GTGGAGGTGAGGGTACAACAGCAGACCATACTGGATTATGCATCGACTGA
GCTCAGGGTCTGAGCTCAGGGTCGACCTTATGGAGGATTATGTCGTTGAA
GAGAGCATAGTCAACAAAAGTACTCTGTTCCTTCCCCAGAGAGAAAAAAC
TTTTGAGAGACCAGCGCGTTAGCTAAAGTAGACGGCGTGCCATCAATTTG
GATTATTCGTCAACTGACCTCAGGGTCTGGGCTCAGGGTCGACCTCATGG
AGAGCCAAAACTATTCGACGTTGATGTAGTTTTCGCTCAATGATATGCTC
AATCAACCCTGAGCTTGAATTTGGATACGAGCTCGGTCGATGAGTTCTCC
GACGCTGCTGTTCGATAAACCGACCTGCACAATTTGCGATGGGTGGCGGC
CTTGTCGACTGCCATGTACCAATACGGAGGTTTTGCCCCACAATATTTTC
TGTGAATGCACGTTGTCGGCAGCAGAGGGAGGTTTGGCCCCATTTGCTTT
TCTAAGACTGCGAGTGGTGGACACGCAGAGGGAGTTACTGCCCCAACGCG
GTTTATCAGAATGTGCGTACAGTAGAGCACGAGGGGAACCACGTGTGTGG
TGCGTGTGTGGGTGCGTCGCAGAGCCCATCACAGACGTAGGTGGGCTGGT
CGCACGTGGGCGAGTTCACGGGCCGCAAAACATCTCACGTTGCCAGGACC
ACACTACTACCACTGCTGTGCTTGACGGTCAGCGCTGACTGTTCAGCACA
GCAGCGGTAAAAGCGTGTTTCCAACACACGTGTCATACAATGGTCTTGTG
ATTCGAGCACTGAGAGAGCCTCGCAAGTGAGTGACTGGTTGCCACAGCCC
TCCACCGCACCCATCCATCCATGCGTTCCCAAGAACGGCAAGCTTCTCTC
TTCAGCGACAGGCAGACAGACAGGGCGAGAGTAAAACTGCCGATGAAGTG
TTCCCGAGCGGAGAGGTCTCGCGTTGATGGCGTGGACAAAGCGAAATTAT
TTGTTTGGAGTGCTCCGATCTGACGTTTTTTTGTGGAATGACAACGCATC
CCTTTATTATTTATTACCCAACGCTCATTCCACCTCCGTCCGTCGCTCCC
TCGCAATATACCCGTTTCCCCGCGCTCCAATCCAATGATCCCAATCCAAT
GATCCCAATCCAGGAGGCTCGCCGACGAGACGGCGGGCGAAATCCGCGCC
GTGCCCTTGCTCTCGCCGCTCTAGATGTGGCCGGTCGCGGAGAAGTGGTA
ACGCCAGAGTCTCTCCTGCAAACCCTGCGAGACGGCGTGCAAGGCCACGG
TGCCGGCAGTGAAGTCGGTGCTTCTTCCGTAGGCCAGGAGGCAGCATCTA
GAAGCACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:160267..170974-

>mRNA_P-littoralis_Contig191.41.1 ID=mRNA_P-littoralis_Contig191.41.1|Name=mRNA_P-littoralis_Contig191.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1974bp|location=Sequence derived from alignment at P-littoralis_Contig191:160267..170974- (Pylaiella littoralis U1_48)
ATGGACCCCGAAGACGAAGACCTGAAGGCCCGTCTTCTAGCTTCCTTCTG
CCCGGTGCTGCGGTTCGATGCCGCCGAGAAGCATTACCCAGTTCGCGCCG
AGCTGTTCGTTTCTTCCTCGCTGCTACTGCGAAGACCCAAGAACCCCGGA
GAGGTGCGGGCAGAGATGAGGCGGCAGAGGAGGAGAGAGGCCGAAGAAGG
GAACAAGACGGAAAAGGCCGACAAAGGGAACGAAAACGATGAGCTTCATC
GCACCGTCTCTGCGGGAGGAAGCGGTGGCGATGGTGATGGTGCTGACGGT
GGCGATGACAGTAGTGGTGATGGGGCTCTTGCTGACGAGCAAAGCGATCA
AGAGAAAATGCAGCAACTTCAACTCCAGGCTTGCGGAGAGTGCGGCCAGA
GGCAAGGCTGGAAGACCCCCTCAAAGGGGAAATGGACGTTGGTAGATCTC
CCTCCAGGTGCCCAAAGCTGGAGCACCTCGACGTTGCTAGACGAACAACG
GCGAGACCCCCTCCATGAGTTCAGGTTGGAACCACACTGCTGCATTTGGG
ACGGCCAGGAAGGCGACTTGTCGGCGGTTCCCTGTTACGCCTTTGCAGAT
TTGCTCGACCCGTCCACGATCGCACCGTTCATCAGGATAGCGGGGCTGGG
GCCGGTGTACGAGCTCAAGTACGCCTTCTTGTACGGGTACAACGGGACGA
CGTTCGCCATCCCAGGCACATCGGTCGGGGTGCACACCGGCGACCTCGAG
CACGTCACCGTCCGCGTCGACGCCCGGAGAATGATGATACTGGAGGTCTT
CTTTGCTGCGCATGGCACCGGCGAGGGCAAGTGGATCACGTCCAAGGATT
TTTATCGACAGGTAGAAGCCTGGGAGGCAGCGACGCATCCAGGGGTTGCT
GCAGAGGCGCCAGAATCAACCCGGGAGTTCCTTGAGATGGAAGAAGCATC
AGAATCGCCTCTGGTGGAGAATGCTGGTGATGCTGGCGACCAGCCTGAGA
GTGGGGCGGCTGGCACGAAAGCACGGGGGGGCAGTGATAGCAGCGATTTC
GGTGCCGCCGTCGGCGGTTGTGGCGAGCGATTTGTGATTTATCCGGCTCG
AAACGGCCACGCGAGTTACCACATGCCAAAGAGGTGGCGGCGATTCGTCG
GCCTAGGCGACGACGTCTGCGGCGGCGACGGGAAGGTATGGCGACCTTTG
CTAGTCCAGCTGGACCATCCTCGAGGGAGAACGCCTCCTTGGTTGCAGTT
CCGAGGGCGGTGGGGGGGCACTCAATCTATCGCGTGCGAGGGGTTTTGGA
AGGGCCAGGGGGAAGCGCCCCGGCGTTGCAGCGCGGAGGCGAAATACCGG
AGCTTGTTGGAGGAAGGGCTGGTGCCAGACCGAGGGGTGAGGCTTGGCCC
TTCCCGAAGGATGCTGCACGGTAATGCTGACAGGGGTGTGTGGCTGGAGC
GGCACCGGCAGACAGAGAATCGAGTGCCGTTCGCCAACATGTGGACCCGC
GTGCCCGGGCTAAGCTCGTCAAGACCTAGAGATCAAGACTCTCCCAGGAA
AGAAATATTGATCGCGAGAATAAACTGGCTGGCCGATTGGGGTTTCCTTC
AAGACGCTGGAGGAGGATCGACGGATGCCGACGGCTGGTCGTACTACGGC
AGCCAGTCAAGATACGCCGACACGGGCATGGCGGGAAGACCGAAAGACGA
GGGTCTCCTCGTCCACCGCTCCCGGGGGAGAGTGTGGTTCCGAGTTGCTG
CCACGCCGGGGGTTGCGAAGGCGGTGGAGGAGGCTCGCCGACGAGACGGC
GGGCGAAATCCGCGCCGTGCCCTTGCTCTCGCCGCTCTAGATGTGGCCGG
TCGCGGAGAAGTGGTAACGCCAGAGTCTCTCCTGCAAACCCTGCGAGACG
GCGTGCAAGGCCACGGTGCCGGCAGTGAAGTCGGTGCTTCTTCCGTAGGC
CAGGAGGCAGCATCTAGAAGCACC
back to top