mRNA_P-littoralis_Contig191.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig191.108.1
Unique NamemRNA_P-littoralis_Contig191.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.030e-76
Identity = 317/388 (81.70%), Postives = 344/388 (88.66%), Query Frame = 1 
Query:   37 IAAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSRVHIQVCHDSLAGVSKLLEVGGSIDTRDSAQRTLLHRACEEASVDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLVEKGGADTRAPAKLQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPNGHGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMYTNNRRCKERIREAERREERAAEAQRQLVLKQKRDKALRRRELELLDRVDLRSRAR 1200
            +A+HEGH DTV  LLRY A++DQRNRGQETPLHLACR+SH  VVR+LLENGA+PRSED+CG+ P DLC  QE G+ +   L RS+ LK+LGSLK RVHIQVCHD+++GV KLLE+GGSID RD+AQRTLLHRACEEAS+ TVXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LLVEK GAD+RA AK+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GP GH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L YT++RRCKERIREA+RREERAAEAQRQL L++KRD   RRRE ELLDRVDLR+RAR
Sbjct:  124 VASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPRSEDVCGRTPFDLCRDQEPGNQIADSLRRSEQLKELGSLKRRVHIQVCHDNMSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASIATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARAR 511
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: A0A8B9V4G1_9AVES (Uncharacterized protein n=2 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9V4G1_9AVES)

HSP 1 Score: 64.7 bits (156), Expect = 1.050e-7
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSR--VHIQVCHDSLAGVSKLLE-VGGSIDTRDS 408
            AA  GH + V  LL   A VD   RG  TPL +AC R +L+V++ L+E+GANP  ++  G     + S +  G  +  LL+ S +  D  S   R  +H    H     V  LLE  G   D+RD+
Sbjct:   78 AASAGHGECVSYLLAKGACVDALKRGDWTPLMMACTRQNLEVIKDLVEHGANPLLKNKDGWNCFHIASREGHGQVLSYLLAASPSCWDTESTTRRTPLHTAAMHGCRDAVELLLERCGYEPDSRDN 203
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: A0A8C3BEC9_CAIMO (Ankyrin repeat domain 16 n=1 Tax=Cairina moschata domestica TaxID=1240228 RepID=A0A8C3BEC9_CAIMO)

HSP 1 Score: 63.5 bits (153), Expect = 2.370e-7
Identity = 45/126 (35.71%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSR--VHIQVCHDSLAGVSKLLE-VGGSIDTRDS 408
            AA  GH + V  LL   A VD   RG  TPL +AC R +L+V++ L+E+GANP  ++  G     + S +  G  +  LL+ S +  D  S   R  +H    H     V  LLE  G   D+RD+
Sbjct:  125 AASAGHGECVSYLLAKGACVDALKRGDWTPLMMACTRQNLEVIKDLVEHGANPLLKNKDGWNCFHIASREGHGQVLGYLLAASPSSWDTESTTRRTPLHTAAMHGCRDAVELLLERCGYKPDSRDN 250
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: A0A6J3EHX1_AYTFU (ankyrin repeat domain-containing protein 16 n=9 Tax=Anatidae TaxID=8830 RepID=A0A6J3EHX1_AYTFU)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-7
Identity = 41/115 (35.65%), Postives = 57/115 (49.57%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSR--VHIQVCHDSLAGVSKLLE 378
            AA  GH + V  LL   A VD   RG  TPL +AC R +L+V++ L+E+GANP  ++  G     + S +  G  +  LL+ S +  D  S   R  +H    H     V  LLE
Sbjct:   78 AASAGHGECVSYLLAKGACVDALKRGDWTPLMMACTRQNLEVIKALVEHGANPLLKNKDGWNCFHIASREGHGQVLSYLLAASPSSWDTESTTRRTPLHTAAMHGCRDAVELLLE 192
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: UPI0006C98C16 (protein phosphatase 1 regulatory subunit 16A isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C98C16)

HSP 1 Score: 63.5 bits (153), Expect = 3.190e-7
Identity = 36/130 (27.69%), Postives = 67/130 (51.54%), Query Frame = 1 
Query:   49 EGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDL-GSLKSRVHIQVCHDSLAGVSKLLEVGGSIDTRDSAQRTLLHRA 435
            + +++ ++ L+ + A V+  +  + TPLH A    HL +VR L+  GAN  + +  G  P D+C  ++    +EG ++R    ++L    ++   +Q+  D    + KL  VGG ++ +D    T LH A
Sbjct:  140 DDNEEMMKLLVEFGADVNAEDSEKWTPLHAAATCGHLHLVRYLIAKGANLLAVNADGNMPYDICEDEKTLDCIEGEMARRGVTQELIDETRASTEVQMLLD----LQKLASVGGDLEYKDHHGATSLHIA 265
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: A0A493T3U4_ANAPP (Ankyrin repeat domain 16 n=3 Tax=Anatinae TaxID=2068716 RepID=A0A493T3U4_ANAPP)

HSP 1 Score: 60.8 bits (146), Expect = 4.000e-7
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSRVHIQ-------VC-------HDSLAGVSKLLEVGGS 390
            AA  GH + V  LL   A VD   RG  TPL +AC R +L+V++ L+E+GANP  ++  G     + S +  G  +  LL+ S +  D  S   R  +        VC       H +L+  + LLE G +
Sbjct:   78 AASAGHGECVSYLLAKGACVDALKRGDWTPLMMACTRQNLEVIKDLVEHGANPLLKNKDGWNCFHIASREGHGQVLSYLLAASPSSWDTESTTRRTPLHTADLLDLVCGFLPRLVHHNLSSGAALLEAGAA 208
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: R0M7P6_ANAPL (Ankyrin repeat domain-containing protein 16 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0M7P6_ANAPL)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-6
Identity = 39/116 (33.62%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSR--VHIQVCHDSLAGVSKLLEV 381
            AA  GH + V  LL   A VD   RG  TPL +AC R +L+V++ L+E+GANP  ++  G     + S +  G  +  LL+ S +  D  S   R  +H    H    G    +E+
Sbjct:   22 AASAGHGECVSYLLAKGACVDALKRGDWTPLMMACTRQNLEVIKDLVEHGANPLLKNKDGWNCFHIASREGHGQVLSYLLAASPSSWDTESTTRRTPLHTAAMHGCWDGCRDAVEL 137
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: A0A4Y2LIZ4_ARAVE (Protein phosphatase 1 regulatory inhibitor subunit 16B n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LIZ4_ARAVE)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-6
Identity = 38/135 (28.15%), Postives = 64/135 (47.41%), Query Frame = 1 
Query:   58 DDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLKSRVHIQVCHDSLAGVSKLLEVGGSIDTRDSAQRTLLHRACEEASVDTV 462
            ++ ++ LL + A V+ ++  Q TPLH A    HL +VR L+  GA+  + +  G  P D+C  +     +E  +++    +++      +  Q     L+ +  LLE GG I+ RD    T LH A     V  V
Sbjct:  122 EEMMKLLLEFGANVNAKDSEQWTPLHAAATCGHLHLVRYLITKGADLLAVNADGNMPYDICEDENTLDYIESEMAKKGITQEMIDETRAISEQ---QMLSDLKYLLEEGGDIEYRDHQGATPLHIAAANGYVTVV 253
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: UPI00083BF5DE (ankyrin repeat domain-containing protein 40-like n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BF5DE)

HSP 1 Score: 59.3 bits (142), Expect = 2.160e-6
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   40 AAHEGHDDTVRALLRYNAKVDQRNRGQE-TPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDLGSLK 318
            AA  G  D V+AL+  N  V+ +N     T LH ACRR +  VVRVLL +GA+ + E+  G+KP+++C+ Q + S +   ++ ++  ++  S K
Sbjct:   11 AACMGDLDAVQALIAQNIDVNSKNPVNGWTALHWACRRGNEDVVRVLLNSGADSKLENDKGEKPVNVCNHQNIASLLGESITPNNYYQEESSTK 104
[Close]
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Match: UPI000625D4B4 (protein phosphatase 1 regulatory subunit 16A isoform X1 n=4 Tax=Orussus abietinus TaxID=222816 RepID=UPI000625D4B4)

HSP 1 Score: 60.8 bits (146), Expect = 2.240e-6
Identity = 34/130 (26.15%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:   49 EGHDDTVRALLRYNAKVDQRNRGQETPLHLACRRSHLQVVRVLLENGANPRSEDICGKKPIDLCSGQELGSAVEGLLSRSDNLKDL-GSLKSRVHIQVCHDSLAGVSKLLEVGGSIDTRDSAQRTLLHRA 435
            + +++ ++ L+ + A V+  +  + TPLH A    HL +VR L+  GAN  + +  G  P D+C  ++    +EG ++R    ++L    ++   +Q+  D    + K+  VG  ++ +D    T LH A
Sbjct:  120 DDNEEMMKLLVEFGADVNAEDSEKWTPLHAAATCGHLHLVRYLIARGANLLAVNADGNMPYDICDDEKTLDCIEGEMARRGVTQELIDETRASTEVQMLRD----LQKMASVGEDLEYKDHQGATPLHIA 245
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig191.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI1.030e-7681.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B9V4G1_9AVES1.050e-735.71Uncharacterized protein n=2 Tax=Anas zonorhyncha T... [more]
A0A8C3BEC9_CAIMO2.370e-735.71Ankyrin repeat domain 16 n=1 Tax=Cairina moschata ... [more]
A0A6J3EHX1_AYTFU2.660e-735.65ankyrin repeat domain-containing protein 16 n=9 Ta... [more]
UPI0006C98C163.190e-727.69protein phosphatase 1 regulatory subunit 16A isofo... [more]
A0A493T3U4_ANAPP4.000e-732.82Ankyrin repeat domain 16 n=3 Tax=Anatinae TaxID=20... [more]
R0M7P6_ANAPL1.240e-633.62Ankyrin repeat domain-containing protein 16 (Fragm... [more]
A0A4Y2LIZ4_ARAVE1.340e-628.15Protein phosphatase 1 regulatory inhibitor subunit... [more]
UPI00083BF5DE2.160e-636.17ankyrin repeat domain-containing protein 40-like n... [more]
UPI000625D4B42.240e-626.15protein phosphatase 1 regulatory subunit 16A isofo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig191contigP-littoralis_Contig191:376567..381571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7Z2
PFAMsAnk_2,Ank_3
Model size1200
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons7
Evalue8.58e-15
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_009530.1
Descriptionspectrin binding
Cds size171
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig191.108.1prot_P-littoralis_Contig191.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig191 381401..381571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.8601134-UTR-P-littoralis_Contig191:376566..3767661680789921.8601134-UTR-P-littoralis_Contig191:376566..376766Pylaiella littoralis U1_48UTRP-littoralis_Contig191 376567..376766 +
1680789921.8758366-UTR-P-littoralis_Contig191:377180..3772811680789921.8758366-UTR-P-littoralis_Contig191:377180..377281Pylaiella littoralis U1_48UTRP-littoralis_Contig191 377181..377281 +
1680789921.8870084-UTR-P-littoralis_Contig191:378013..3781561680789921.8870084-UTR-P-littoralis_Contig191:378013..378156Pylaiella littoralis U1_48UTRP-littoralis_Contig191 378014..378156 +
1680789921.89728-UTR-P-littoralis_Contig191:378524..3786431680789921.89728-UTR-P-littoralis_Contig191:378524..378643Pylaiella littoralis U1_48UTRP-littoralis_Contig191 378525..378643 +
1680789921.911695-UTR-P-littoralis_Contig191:379284..3795061680789921.911695-UTR-P-littoralis_Contig191:379284..379506Pylaiella littoralis U1_48UTRP-littoralis_Contig191 379285..379506 +
1680789921.9256468-UTR-P-littoralis_Contig191:380651..3808351680789921.9256468-UTR-P-littoralis_Contig191:380651..380835Pylaiella littoralis U1_48UTRP-littoralis_Contig191 380652..380835 +
1680789921.9363742-UTR-P-littoralis_Contig191:381340..3814001680789921.9363742-UTR-P-littoralis_Contig191:381340..381400Pylaiella littoralis U1_48UTRP-littoralis_Contig191 381341..381400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789921.9509943-CDS-P-littoralis_Contig191:381400..3815711680789921.9509943-CDS-P-littoralis_Contig191:381400..381571Pylaiella littoralis U1_48CDSP-littoralis_Contig191 381401..381571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig191.108.1

>prot_P-littoralis_Contig191.108.1 ID=prot_P-littoralis_Contig191.108.1|Name=mRNA_P-littoralis_Contig191.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
MYTNNRRCKERIREAERREERAAEAQRQLVLKQKRDKALRRRELELLDRV
DLRSRAR
back to top

mRNA from alignment at P-littoralis_Contig191:376567..381571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig191.108.1 ID=mRNA_P-littoralis_Contig191.108.1|Name=mRNA_P-littoralis_Contig191.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5005bp|location=Sequence derived from alignment at P-littoralis_Contig191:376567..381571+ (Pylaiella littoralis U1_48)
CCATTGACGCTTAATCCAACGACACGCGAAACTTAGATCGCCGCACACGA
GGGGCATGATGACACGGTGAGAGCACTGCTAAGGTACAACGCAAAAGTCG
ATCAGAGGAACAGAGGTCAAGAGACCCCGCTTCACTTGGCATGTCGGCGG
AGCCACTTGCAGGTGGTCCGCGTGCTGCTGGAAAATGGTGCAAACCCAAG
GTAAACTCGTTCGACCGGAAAGGAGGGTAGCATGCCCGTGCTGCCTTTGA
TGCATGCTCTTGGATTTTGTAGAGGCCTGTCTACATCGTCCAGCAAGCGC
TTGTTAAACCCTAGATACATTTTTGAATTCAAACATATTCACATGGCGTT
ACCGTCGGACTCGGAGGAGCAGTGTTGTGCTGTGGGAAGGTTTTTGTTGT
CGCTACATCAATGTATTTGATTTTGTGTTCCTGGTTAAGTTTTTTGGGCG
TCCTTTCAATGAGCAGGCAGCCGAAATTTAATGGTCGGAAGGTACTTTTT
TCAAAGTAGTATGGAACAACACCTCGTCAGCCACATCCGGAAGGCTATTG
TTTGACTCCAGGTGCGTACGCGTTTCCCAAATTTCTCTCTTTCACCGATG
GATACCATTGACAGGAGTGAGGACATCTGTGGGAAAAAGCCTATCGATCT
CTGCAGTGGCCAAGAATTAGGGAGCGCCGTCGAAGGCTTGCTGAGCAGAA
GCGACAATCTCAAGGGTATGCCGAACGAAGATTTACCGTACGAACTGTGC
GTATGTTTTTATATTCCATTTATTCTGGGCAGCAGTCTTCACCTTTCGTT
ACGAAGTGGGTGCACTAGCCGAGGTCATGCAGAAGGAAGGTCATACACAG
GAATTGTTTTAGCCCTCCACCGGCCTTCTGCAGTGCTTGTCTTTTTTTTC
ATTTGAGCTTGTTCACGCGAGACAGGTTCAACCGTCCTCTTACCCTCGTC
GACTGTTAAGTCGAAGACGTGGTTTGTATACTCGCGACATATGATGGTCA
TTTCCCACTCTCAATTTTTCTGTAAGCAAAGCCCGAGGTCGTGTGTATTC
ACCAGGATTCGAACTCACGTCCTGGGTATCAGTTGGCTTCGAGGTTGCCA
CTGCCTCGATCGGTCCTTTCGATCTGACGCTTTTAGTACAAGGAGCGAAA
TGAAGCCGAACGCCATACAAACGTCAATGCGTGTAACTTAAAAAGTGAAT
GGCGGCAGCAGTCATGCATTGCACACGTTTACGGTATGAACAGCAAACAA
GATTGGAGGCCGTTTTGCGTCACCGGATCCGCCGCGGGCTGTGCCAGATG
TTTGAGATGGTTGTAGAATATATCTGCGTGCAGTACAGCACGTGCATCGA
GAAGGACACGCCGTTCACAGCACTGCCATTGTTCTGCACCAGTTCCTGAT
ACTCTCTGACCGCGCCTGTGATTATTCGGCCCTCCATTTTCCGAAAGACC
TAGGTTCGCTCAAAAGCAGGGTGCACATCCAGGTGTGCCACGACAGCCTG
GCAGGTGTCAGCAAGCTGTTGGAGGTTGGCGGTTCGATCGACACCAGGGA
CTCCGCGCAACGCACCCTTCTGCACCGGGCGTGCGAAGAGGTGATTTCAG
TACTGCTGCGGGCTTTTTCCCCAACACCTCTCTTCCAAATTTGAAAGCAT
CGGTAAGGATTACTGACATACGTGGACATTCGCAATCATGTTGTTATGCG
GAAGAACATGGGTTCCATGCACGGCAACCGAAGCGCAAGGTTCAGAGTTG
GGGGCTGAAGAAGATGGGAGTCTTTGAAAACCACTCTCTATGAATTCAAC
GGGAATACAGTAACGAAATAGCCTCCGACATGCTACGTTTCCTGCGTAGT
GGTCCAAAAAACATGAAGCGCGAGTTTACCACGCGAACCAAGCTGTGGCA
CGGCGATGTTTGGACAGAGGGGAGATGCACTCTGAACTGTCCGTGTTTCG
GGCCGCAGGCGAGCGTCGACACGGTGGTCAAGCTGTTGGAGCTCGGAGCA
ACAGTGAACACAACTGAAAAAAGAAAACAAACGCCGCTCCATCGCGCTTG
CGAACGGGGTCGCTTGGACATAGTCAGGTGCGACTTTTGGGACACCCACC
ATAGGACTACGCATAATTTTGTTTTGGCAGTTTAAGTGCAGAAAATCGAA
TTTTCTCGGCACATTATTCGCTCTTTTGCTGCAGTAGATGTTCTATCATA
TGGTGGTTCATTTTTCACTCGACTTCAGTGCCCGTGGATGAAGTCTGGAG
CCAACGCACAGGGACATCTGTCTGATGGCATCGATTGTTGCCGTTGTTGC
GTGTGTCCCTCTCCCCTCTTCCCCATTGGGGGGCGTTGAGCGCAAAGCCC
GCAACGGGGTATACAATGGACGCCTGTCCTATTCTACATCGAACATGACA
TCAACCCGATACAACCTCTTATCGCAATTGCAATTTTCAGCTAGAAAGTA
TCAGAGCCCAATCCCCCACCCACAATGTATCGTGGCATAAGTGAGTGTCG
TCGCCTATCACCGCTCCGCCCCCGAAGAAGACACGCACAGCACAGGACAC
CCGAGCAGCTTCGCAAGCTTGCCTCGGTCCCCTAGACACCCGTTCGCCCC
TCGCCTGCAATAAATACCGTCCGTTGCGACAAGTACATATATTCCAGCCC
TCATGGACGTTTGCGACTGACTCTTGTTTACCGCTTGTTGTGCATCCGCC
CAAAACCCTTCGGGAAAGGCTCCTGGTCGAGAAGGGAGGGGCGGATACTC
GGGCCCCGGCGAAGCTGCAGCATGAACCGCTGCACGTGGCATCACTAGGG
AACCGGGGCGAGGTGGTGAAGTATTTGCTGGCGGAGGGAAACGTGGACGT
CGAGGCTGTCGACAAAAACGGCTCGAGGTGTCTGCACTTGGCCGTCCAAA
GGAACAAGCTGGAGGCCATTCGGGAGTTGCTCGAGCACGGGTACGTCGGG
TTGTGTGCATCAAAGTCCTAAAGAGTTGATGGAGTGCTTACAAATACGGA
TTGAGACAGGAAGTTTGCCATTGGACGAAAAAACTTCGGACAGAAAAAAC
ACCGTGCCGAGCGAATTCGTTGGATGGCTGTTATAATGTCGTCCCTGGTC
GTTCGGATCGGAGGGCTTTTGGACATTGTCAAGCAGACCAGTCCGCGCAG
AAAAACGTCCGGGAAACAATCACTTTGTAAACTTGCTTTTTTTCTCTGTA
AGAAAATTCACTTTTTCTGGAAGGAGGTTGATACAACTTCTCACGTGGGT
CACGCACAATCGGCACGACCTGCGACGTAACCAAATGGCTCAGAGGCCAC
ACGAGACCGACGCACACTATACTGACAACGCTCGGCACCACCTGCCCATG
AAGGCTATAAAAAACACCCTCCAGACATTCCTTGCGGTACTACATTGCGT
GGGTGTGATCGGTATTCAATTACAGTTTTTGCCCTGAGCAGCACTCTTTC
CTGGTGTCTACTACAACAACGCATTGTGTATTATCATATGATACTACGTG
TGATATTCGTGGCAAATGTAACACCGTACACCTCATCGATTGGCCAATTA
AAGATCTCTCCAGGAGCCTAACATCAGAAAGTTGGCACCGTGACCGTGGC
TATGCATCAACCGTCATCCAAGGATCTTCGATTATTGTTGGTTATTTCGA
TGGAAGGCTTTTTGAACAATCAGAAAGCTGCGTGCCCTTCAGTGGCAAAA
GAAAACTAGGGTCCTATTACTAAGTCGAGCGAGGTAATAAACGCACCTGG
CCCATGAATGCGGAATTTTACTCCAACCTAAGCATGAGGCATGTACTAGG
ATGCTGACTGCCAATCACTTGTGGTGGTCGGGCGAGCTATATGGTCAGCG
ACTCATTGGTTGGTTGCAATACCTTCTAACAGTCGGACGACACACACAAA
CACATACTTCGAAGTAAACACATACTGTGTCCAAATATGATGCACCGGGT
GTTCATTCCAACCCACTTTCTTTAGTCATCATCGCCTACACATGCCCAGG
CACAGCGTGCATCAAATCTATCACAATCTTCGACACCGAACGCTTCAGCA
TGCACGCACAAACTTGTGTCACGCACGACCTGAAGGTGTGACGTCGAAGC
CACCCTGCCGGATGGACTGACTCGGCCGCTACACATCGCCTGTTCGAGTG
GATACGAAAAGGCCGCAACGCTCTTGCTGGAACACCGGGCTAATATCAAC
GCGCGGGGCCCCAATGGACATGGCCCCTTGCACCTGGCCGCCAAGGAAGG
TGCTGCTCTTATCGTCGAGGTACGAGGCCCATAGCCTTTCCATGTTTAGA
AGTCGGGTTCTGGCCAGCATGACAACGACGTTTTCATGATTGCCAAAGTA
CACGCGTGGACCATCAAAAAAGTTTGTTTGGACGTGGCTATGTGGTGGCC
ACAAGAGGACATAGTACTTGAGAGAGGAGGTGAGAGAGGGGGGGCGGGGC
GTTGCAAGGGGGCGAGTAGGCTTGCCGACATTTCGGATAGAGCAGTACAG
GTCTGACGGGATCGACAATTTTCCTAAGACGTTTTCGGAAGCTTTGCTCC
GGAGATATGCGTATGTGCACTGCTGTGACCGCGCCACGTGTACCCAGCTT
ATCATTGGTCTTGTGTGATGGTATACGCTACTGTCTGCAAATATTGAAGG
ACAAATCATCCACAAAAACCCACACTCTCCCAGTCACCAGTGTGCCTGCG
TAGTTTACAACCCACTTCCCCGCACGTTCGCCCCTCCCGTTTTCGTCAAA
AAACGATGCACTTGTATGATACAGCTTTTAATCGGCGGGAAGGCGGACTT
GCATGCCAAAGATGGCCGAGGCCGTACCCCTCTAATGTACACTAACAACC
GGCGGTGTAAAGAGAGGATCCGAGAGGCGGAACGGAGGGAGGAGCGGGCT
GCTGAGGCTCAGAGACAGCTGGTGCTCAAGCAAAAAAGAGACAAAGCGCT
CAGGCGTAGGGAGCTGGAGCTGCTGGATAGGGTCGATCTTCGGTCAAGAG
CGCGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig191:376567..381571+

>mRNA_P-littoralis_Contig191.108.1 ID=mRNA_P-littoralis_Contig191.108.1|Name=mRNA_P-littoralis_Contig191.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig191:376567..381571+ (Pylaiella littoralis U1_48)
ATGTACACTAACAACCGGCGGTGTAAAGAGAGGATCCGAGAGGCGGAACG
GAGGGAGGAGCGGGCTGCTGAGGCTCAGAGACAGCTGGTGCTCAAGCAAA
AAAGAGACAAAGCGCTCAGGCGTAGGGAGCTGGAGCTGCTGGATAGGGTC
GATCTTCGGTCAAGAGCGCGC
back to top